Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS15390

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS15380 and A4249_RS15385 are separated by 199 nucleotidesA4249_RS15385 and A4249_RS15390 overlap by 4 nucleotidesA4249_RS15390 and A4249_RS15395 are separated by 52 nucleotides A4249_RS15380: A4249_RS15380 - TonB-dependent receptor plug domain-containing protein, at 3,117,437 to 3,119,965 _RS15380 A4249_RS15385: A4249_RS15385 - 2,3-diphosphoglycerate-dependent phosphoglycerate mutase, at 3,120,165 to 3,120,878 _RS15385 A4249_RS15390: A4249_RS15390 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 3,120,875 to 3,121,504 _RS15390 A4249_RS15395: A4249_RS15395 - pentapeptide repeat-containing protein, at 3,121,557 to 3,122,825 _RS15395 Position (kb) 3120 3121 3122Strain fitness (log2 ratio) -1 0 1at 3119.897 kb on + strandat 3119.897 kb on + strandat 3119.897 kb on + strandat 3119.898 kb on - strandat 3119.898 kb on - strandat 3119.898 kb on - strandat 3119.909 kb on + strandat 3119.909 kb on + strandat 3119.909 kb on + strandat 3119.909 kb on + strandat 3119.909 kb on + strandat 3119.909 kb on + strandat 3119.910 kb on - strandat 3119.910 kb on - strandat 3119.910 kb on - strandat 3119.910 kb on - strandat 3119.963 kb on + strandat 3120.146 kb on - strandat 3121.531 kb on + strandat 3121.531 kb on + strandat 3121.532 kb on - strandat 3121.545 kb on + strandat 3121.545 kb on + strandat 3121.545 kb on + strandat 3121.545 kb on + strandat 3121.546 kb on - strandat 3121.546 kb on - strandat 3121.546 kb on - strandat 3121.546 kb on - strandat 3122.457 kb on + strand, within A4249_RS15395at 3122.457 kb on + strand, within A4249_RS15395at 3122.458 kb on - strand, within A4249_RS15395at 3122.458 kb on - strand, within A4249_RS15395

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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3,119,897 + +0.8
3,119,897 + +0.4
3,119,897 + +0.1
3,119,898 - +0.8
3,119,898 - -1.4
3,119,898 - -0.2
3,119,909 + +0.4
3,119,909 + -0.2
3,119,909 + +0.1
3,119,909 + +0.4
3,119,909 + -0.6
3,119,909 + -0.9
3,119,910 - -0.7
3,119,910 - +1.0
3,119,910 - -0.5
3,119,910 - +0.3
3,119,963 + -0.4
3,120,146 - -0.5
3,121,531 + -0.0
3,121,531 + +0.1
3,121,532 - -0.5
3,121,545 + -0.8
3,121,545 + -1.5
3,121,545 + +0.3
3,121,545 + -0.3
3,121,546 - +0.3
3,121,546 - +0.1
3,121,546 - +0.2
3,121,546 - -1.2
3,122,457 + A4249_RS15395 0.71 -0.3
3,122,457 + A4249_RS15395 0.71 +0.3
3,122,458 - A4249_RS15395 0.71 -0.2
3,122,458 - A4249_RS15395 0.71 +0.5

Or see this region's nucleotide sequence