Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12640

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12630 and A4249_RS12635 are separated by 1 nucleotidesA4249_RS12635 and A4249_RS12640 overlap by 4 nucleotidesA4249_RS12640 and A4249_RS12645 are separated by 93 nucleotidesA4249_RS12645 and A4249_RS12650 are separated by 102 nucleotides A4249_RS12630: A4249_RS12630 - right-handed parallel beta-helix repeat-containing protein, at 2,535,189 to 2,536,139 _RS12630 A4249_RS12635: A4249_RS12635 - phosphatase PAP2 family protein, at 2,536,141 to 2,536,938 _RS12635 A4249_RS12640: A4249_RS12640 - hypothetical protein, at 2,536,935 to 2,537,432 _RS12640 A4249_RS12645: A4249_RS12645 - ribonuclease, at 2,537,526 to 2,537,786 _RS12645 A4249_RS12650: A4249_RS12650 - LLM class flavin-dependent oxidoreductase, at 2,537,889 to 2,538,893 _RS12650 Position (kb) 2536 2537 2538Strain fitness (log2 ratio) -2 -1 0 1at 2536.139 kb on + strandat 2536.425 kb on - strand, within A4249_RS12635at 2536.425 kb on - strand, within A4249_RS12635at 2536.425 kb on - strand, within A4249_RS12635at 2536.663 kb on + strand, within A4249_RS12635at 2536.663 kb on + strand, within A4249_RS12635at 2536.663 kb on + strand, within A4249_RS12635at 2536.663 kb on + strand, within A4249_RS12635at 2536.663 kb on + strand, within A4249_RS12635at 2536.664 kb on - strand, within A4249_RS12635at 2537.041 kb on + strand, within A4249_RS12640at 2537.111 kb on - strand, within A4249_RS12640at 2537.274 kb on + strand, within A4249_RS12640at 2537.275 kb on - strand, within A4249_RS12640at 2537.528 kb on - strandat 2537.881 kb on + strandat 2537.882 kb on - strandat 2537.882 kb on - strandat 2537.997 kb on + strand, within A4249_RS12650at 2537.997 kb on + strand, within A4249_RS12650at 2537.997 kb on + strand, within A4249_RS12650at 2537.997 kb on + strand, within A4249_RS12650at 2537.998 kb on - strand, within A4249_RS12650at 2538.029 kb on + strand, within A4249_RS12650at 2538.030 kb on - strand, within A4249_RS12650at 2538.030 kb on - strand, within A4249_RS12650at 2538.030 kb on - strand, within A4249_RS12650at 2538.030 kb on - strand, within A4249_RS12650at 2538.030 kb on - strand, within A4249_RS12650at 2538.030 kb on - strand, within A4249_RS12650at 2538.255 kb on + strand, within A4249_RS12650at 2538.255 kb on + strand, within A4249_RS12650at 2538.255 kb on + strand, within A4249_RS12650at 2538.256 kb on - strand, within A4249_RS12650at 2538.432 kb on + strand, within A4249_RS12650

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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2,536,139 + -2.1
2,536,425 - A4249_RS12635 0.36 +0.4
2,536,425 - A4249_RS12635 0.36 +0.1
2,536,425 - A4249_RS12635 0.36 -0.3
2,536,663 + A4249_RS12635 0.65 -0.1
2,536,663 + A4249_RS12635 0.65 +0.2
2,536,663 + A4249_RS12635 0.65 -0.5
2,536,663 + A4249_RS12635 0.65 -0.3
2,536,663 + A4249_RS12635 0.65 -0.6
2,536,664 - A4249_RS12635 0.66 +0.8
2,537,041 + A4249_RS12640 0.21 +0.4
2,537,111 - A4249_RS12640 0.35 -0.5
2,537,274 + A4249_RS12640 0.68 +0.1
2,537,275 - A4249_RS12640 0.68 -0.4
2,537,528 - -0.6
2,537,881 + -0.5
2,537,882 - +0.4
2,537,882 - -0.5
2,537,997 + A4249_RS12650 0.11 -0.8
2,537,997 + A4249_RS12650 0.11 -0.9
2,537,997 + A4249_RS12650 0.11 +0.3
2,537,997 + A4249_RS12650 0.11 -0.2
2,537,998 - A4249_RS12650 0.11 -0.3
2,538,029 + A4249_RS12650 0.14 -0.8
2,538,030 - A4249_RS12650 0.14 +0.1
2,538,030 - A4249_RS12650 0.14 +0.5
2,538,030 - A4249_RS12650 0.14 +0.2
2,538,030 - A4249_RS12650 0.14 +0.9
2,538,030 - A4249_RS12650 0.14 -0.4
2,538,030 - A4249_RS12650 0.14 +0.4
2,538,255 + A4249_RS12650 0.36 -1.0
2,538,255 + A4249_RS12650 0.36 +0.1
2,538,255 + A4249_RS12650 0.36 -0.1
2,538,256 - A4249_RS12650 0.37 -0.6
2,538,432 + A4249_RS12650 0.54 +0.3

Or see this region's nucleotide sequence