Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS11985

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS11980 and A4249_RS11985 are separated by 90 nucleotidesA4249_RS11985 and A4249_RS11990 are separated by 46 nucleotidesA4249_RS11990 and A4249_RS11995 overlap by 4 nucleotides A4249_RS11980: A4249_RS11980 - amidohydrolase, at 2,406,061 to 2,407,362 _RS11980 A4249_RS11985: A4249_RS11985 - hypothetical protein, at 2,407,453 to 2,407,809 _RS11985 A4249_RS11990: A4249_RS11990 - SRPBCC domain-containing protein, at 2,407,856 to 2,408,296 _RS11990 A4249_RS11995: A4249_RS11995 - type II secretion system F family protein, at 2,408,293 to 2,409,270 _RS11995 Position (kb) 2407 2408Strain fitness (log2 ratio) -1 0 1at 2406.478 kb on - strand, within A4249_RS11980at 2406.512 kb on + strand, within A4249_RS11980at 2406.513 kb on - strand, within A4249_RS11980at 2406.708 kb on + strand, within A4249_RS11980at 2406.708 kb on + strand, within A4249_RS11980at 2406.708 kb on + strand, within A4249_RS11980at 2406.708 kb on + strand, within A4249_RS11980at 2406.709 kb on - strand, within A4249_RS11980at 2406.709 kb on - strand, within A4249_RS11980at 2406.709 kb on - strand, within A4249_RS11980at 2406.709 kb on - strand, within A4249_RS11980at 2406.726 kb on - strand, within A4249_RS11980at 2406.726 kb on - strand, within A4249_RS11980at 2406.945 kb on + strand, within A4249_RS11980at 2406.945 kb on + strand, within A4249_RS11980at 2406.945 kb on + strand, within A4249_RS11980at 2406.945 kb on + strand, within A4249_RS11980at 2406.945 kb on + strand, within A4249_RS11980at 2406.945 kb on + strand, within A4249_RS11980at 2406.945 kb on + strand, within A4249_RS11980at 2406.945 kb on + strand, within A4249_RS11980at 2406.945 kb on + strand, within A4249_RS11980at 2406.945 kb on + strand, within A4249_RS11980at 2406.946 kb on - strand, within A4249_RS11980at 2406.946 kb on - strand, within A4249_RS11980at 2406.946 kb on - strand, within A4249_RS11980at 2406.946 kb on - strand, within A4249_RS11980at 2406.946 kb on - strand, within A4249_RS11980at 2406.946 kb on - strand, within A4249_RS11980at 2406.946 kb on - strand, within A4249_RS11980at 2406.946 kb on - strand, within A4249_RS11980at 2406.946 kb on - strand, within A4249_RS11980at 2406.946 kb on - strand, within A4249_RS11980at 2406.984 kb on + strand, within A4249_RS11980at 2406.984 kb on + strand, within A4249_RS11980at 2406.984 kb on + strand, within A4249_RS11980at 2406.994 kb on - strand, within A4249_RS11980at 2406.995 kb on + strand, within A4249_RS11980at 2406.995 kb on + strand, within A4249_RS11980at 2406.995 kb on + strand, within A4249_RS11980at 2406.995 kb on + strand, within A4249_RS11980at 2406.995 kb on + strand, within A4249_RS11980at 2406.995 kb on + strand, within A4249_RS11980at 2406.995 kb on + strand, within A4249_RS11980at 2406.995 kb on + strand, within A4249_RS11980at 2406.995 kb on + strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2406.996 kb on - strand, within A4249_RS11980at 2407.588 kb on + strand, within A4249_RS11985at 2407.588 kb on + strand, within A4249_RS11985at 2407.589 kb on - strand, within A4249_RS11985at 2407.589 kb on - strand, within A4249_RS11985at 2408.401 kb on + strand, within A4249_RS11995at 2408.401 kb on + strand, within A4249_RS11995at 2408.401 kb on + strand, within A4249_RS11995at 2408.401 kb on + strand, within A4249_RS11995at 2408.402 kb on - strand, within A4249_RS11995at 2408.492 kb on + strand, within A4249_RS11995at 2408.492 kb on + strand, within A4249_RS11995at 2408.492 kb on + strand, within A4249_RS11995at 2408.493 kb on - strand, within A4249_RS11995at 2408.493 kb on - strand, within A4249_RS11995at 2408.567 kb on + strand, within A4249_RS11995at 2408.567 kb on + strand, within A4249_RS11995at 2408.567 kb on + strand, within A4249_RS11995at 2408.591 kb on + strand, within A4249_RS11995at 2408.591 kb on + strand, within A4249_RS11995at 2408.592 kb on - strand, within A4249_RS11995at 2408.592 kb on - strand, within A4249_RS11995at 2408.592 kb on - strand, within A4249_RS11995at 2408.592 kb on - strand, within A4249_RS11995at 2408.783 kb on + strand, within A4249_RS11995at 2408.784 kb on - strand, within A4249_RS11995at 2408.784 kb on - strand, within A4249_RS11995at 2408.798 kb on + strand, within A4249_RS11995at 2408.798 kb on + strand, within A4249_RS11995at 2408.798 kb on + strand, within A4249_RS11995at 2408.799 kb on - strand, within A4249_RS11995at 2408.799 kb on - strand, within A4249_RS11995at 2408.799 kb on - strand, within A4249_RS11995at 2408.799 kb on - strand, within A4249_RS11995at 2408.799 kb on - strand, within A4249_RS11995at 2408.799 kb on - strand, within A4249_RS11995at 2408.799 kb on - strand, within A4249_RS11995at 2408.799 kb on - strand, within A4249_RS11995

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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2,406,478 - A4249_RS11980 0.32 -1.6
2,406,512 + A4249_RS11980 0.35 +0.2
2,406,513 - A4249_RS11980 0.35 -0.4
2,406,708 + A4249_RS11980 0.50 -0.9
2,406,708 + A4249_RS11980 0.50 -0.3
2,406,708 + A4249_RS11980 0.50 -0.1
2,406,708 + A4249_RS11980 0.50 +0.6
2,406,709 - A4249_RS11980 0.50 -0.1
2,406,709 - A4249_RS11980 0.50 -0.1
2,406,709 - A4249_RS11980 0.50 +0.2
2,406,709 - A4249_RS11980 0.50 -0.4
2,406,726 - A4249_RS11980 0.51 +0.4
2,406,726 - A4249_RS11980 0.51 +0.4
2,406,945 + A4249_RS11980 0.68 -0.8
2,406,945 + A4249_RS11980 0.68 -1.1
2,406,945 + A4249_RS11980 0.68 +1.4
2,406,945 + A4249_RS11980 0.68 -1.6
2,406,945 + A4249_RS11980 0.68 +0.3
2,406,945 + A4249_RS11980 0.68 -0.8
2,406,945 + A4249_RS11980 0.68 -0.2
2,406,945 + A4249_RS11980 0.68 +0.5
2,406,945 + A4249_RS11980 0.68 +0.4
2,406,945 + A4249_RS11980 0.68 -0.3
2,406,946 - A4249_RS11980 0.68 +0.7
2,406,946 - A4249_RS11980 0.68 +0.1
2,406,946 - A4249_RS11980 0.68 +0.1
2,406,946 - A4249_RS11980 0.68 -0.1
2,406,946 - A4249_RS11980 0.68 -1.2
2,406,946 - A4249_RS11980 0.68 -0.1
2,406,946 - A4249_RS11980 0.68 +0.4
2,406,946 - A4249_RS11980 0.68 -0.4
2,406,946 - A4249_RS11980 0.68 -0.8
2,406,946 - A4249_RS11980 0.68 -0.4
2,406,984 + A4249_RS11980 0.71 -0.6
2,406,984 + A4249_RS11980 0.71 -1.0
2,406,984 + A4249_RS11980 0.71 -0.3
2,406,994 - A4249_RS11980 0.72 -0.2
2,406,995 + A4249_RS11980 0.72 -0.6
2,406,995 + A4249_RS11980 0.72 -1.5
2,406,995 + A4249_RS11980 0.72 +0.3
2,406,995 + A4249_RS11980 0.72 +0.3
2,406,995 + A4249_RS11980 0.72 -0.5
2,406,995 + A4249_RS11980 0.72 +0.2
2,406,995 + A4249_RS11980 0.72 -0.0
2,406,995 + A4249_RS11980 0.72 +0.0
2,406,995 + A4249_RS11980 0.72 -0.3
2,406,996 - A4249_RS11980 0.72 +0.2
2,406,996 - A4249_RS11980 0.72 +0.1
2,406,996 - A4249_RS11980 0.72 -0.8
2,406,996 - A4249_RS11980 0.72 +0.3
2,406,996 - A4249_RS11980 0.72 -0.4
2,406,996 - A4249_RS11980 0.72 -0.5
2,406,996 - A4249_RS11980 0.72 +0.2
2,406,996 - A4249_RS11980 0.72 +0.7
2,406,996 - A4249_RS11980 0.72 +0.6
2,406,996 - A4249_RS11980 0.72 +0.3
2,406,996 - A4249_RS11980 0.72 +0.8
2,406,996 - A4249_RS11980 0.72 -0.2
2,406,996 - A4249_RS11980 0.72 -1.4
2,406,996 - A4249_RS11980 0.72 +0.2
2,406,996 - A4249_RS11980 0.72 +0.3
2,406,996 - A4249_RS11980 0.72 -0.4
2,406,996 - A4249_RS11980 0.72 -0.3
2,406,996 - A4249_RS11980 0.72 -0.1
2,406,996 - A4249_RS11980 0.72 -0.2
2,406,996 - A4249_RS11980 0.72 +0.5
2,407,588 + A4249_RS11985 0.38 -0.2
2,407,588 + A4249_RS11985 0.38 -1.1
2,407,589 - A4249_RS11985 0.38 -0.2
2,407,589 - A4249_RS11985 0.38 -0.2
2,408,401 + A4249_RS11995 0.11 -0.8
2,408,401 + A4249_RS11995 0.11 -0.3
2,408,401 + A4249_RS11995 0.11 +0.2
2,408,401 + A4249_RS11995 0.11 -1.4
2,408,402 - A4249_RS11995 0.11 +0.2
2,408,492 + A4249_RS11995 0.20 -0.6
2,408,492 + A4249_RS11995 0.20 +1.1
2,408,492 + A4249_RS11995 0.20 +0.5
2,408,493 - A4249_RS11995 0.20 -0.5
2,408,493 - A4249_RS11995 0.20 -1.3
2,408,567 + A4249_RS11995 0.28 -1.3
2,408,567 + A4249_RS11995 0.28 -0.2
2,408,567 + A4249_RS11995 0.28 +1.6
2,408,591 + A4249_RS11995 0.30 -0.3
2,408,591 + A4249_RS11995 0.30 +0.5
2,408,592 - A4249_RS11995 0.31 -0.8
2,408,592 - A4249_RS11995 0.31 -0.5
2,408,592 - A4249_RS11995 0.31 -0.1
2,408,592 - A4249_RS11995 0.31 -0.9
2,408,783 + A4249_RS11995 0.50 +0.9
2,408,784 - A4249_RS11995 0.50 -0.6
2,408,784 - A4249_RS11995 0.50 -0.3
2,408,798 + A4249_RS11995 0.52 -1.0
2,408,798 + A4249_RS11995 0.52 -0.9
2,408,798 + A4249_RS11995 0.52 -1.1
2,408,799 - A4249_RS11995 0.52 -0.2
2,408,799 - A4249_RS11995 0.52 +0.7
2,408,799 - A4249_RS11995 0.52 -0.3
2,408,799 - A4249_RS11995 0.52 -0.2
2,408,799 - A4249_RS11995 0.52 +1.1
2,408,799 - A4249_RS11995 0.52 +0.3
2,408,799 - A4249_RS11995 0.52 -0.7
2,408,799 - A4249_RS11995 0.52 -0.3

Or see this region's nucleotide sequence