Experiment: Thymine 0.793 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS11350 and A4249_RS11355 are separated by 32 nucleotides A4249_RS11355 and A4249_RS11360 are separated by 4 nucleotides A4249_RS11360 and A4249_RS11365 are separated by 139 nucleotides
A4249_RS11350: A4249_RS11350 - pseudouridine synthase, at 2,286,983 to 2,287,717
_RS11350
A4249_RS11355: A4249_RS11355 - class I SAM-dependent methyltransferase, at 2,287,750 to 2,288,649
_RS11355
A4249_RS11360: A4249_RS11360 - undecaprenyl-diphosphate phosphatase, at 2,288,654 to 2,289,455
_RS11360
A4249_RS11365: A4249_RS11365 - cation diffusion facilitator family transporter, at 2,289,595 to 2,290,581
_RS11365
Position (kb)
2288
2289
2290 Strain fitness (log2 ratio)
-1
0
1 at 2287.665 kb on + strand at 2287.666 kb on - strand at 2287.775 kb on + strand at 2287.776 kb on - strand at 2287.776 kb on - strand at 2287.835 kb on + strand at 2287.835 kb on + strand at 2287.835 kb on + strand at 2287.835 kb on + strand at 2287.836 kb on - strand at 2288.040 kb on + strand, within A4249_RS11355 at 2288.483 kb on + strand, within A4249_RS11355 at 2288.483 kb on + strand, within A4249_RS11355 at 2288.483 kb on + strand, within A4249_RS11355 at 2288.483 kb on + strand, within A4249_RS11355 at 2288.483 kb on + strand, within A4249_RS11355 at 2288.483 kb on + strand, within A4249_RS11355 at 2288.484 kb on - strand, within A4249_RS11355 at 2288.484 kb on - strand, within A4249_RS11355 at 2288.484 kb on - strand, within A4249_RS11355 at 2288.484 kb on - strand, within A4249_RS11355 at 2288.484 kb on - strand, within A4249_RS11355 at 2288.484 kb on - strand, within A4249_RS11355 at 2288.484 kb on - strand, within A4249_RS11355 at 2288.484 kb on - strand, within A4249_RS11355 at 2288.513 kb on + strand, within A4249_RS11355 at 2288.513 kb on + strand, within A4249_RS11355 at 2288.513 kb on + strand, within A4249_RS11355 at 2288.514 kb on - strand, within A4249_RS11355 at 2288.514 kb on - strand, within A4249_RS11355 at 2288.514 kb on - strand, within A4249_RS11355 at 2288.514 kb on - strand, within A4249_RS11355 at 2288.514 kb on - strand, within A4249_RS11355 at 2288.633 kb on + strand at 2288.633 kb on + strand at 2289.512 kb on + strand at 2289.686 kb on + strand at 2289.686 kb on + strand at 2289.686 kb on + strand at 2289.687 kb on - strand at 2289.838 kb on + strand, within A4249_RS11365 at 2289.838 kb on + strand, within A4249_RS11365 at 2289.839 kb on - strand, within A4249_RS11365 at 2289.903 kb on + strand, within A4249_RS11365 at 2289.903 kb on + strand, within A4249_RS11365 at 2289.904 kb on - strand, within A4249_RS11365 at 2289.904 kb on - strand, within A4249_RS11365 at 2290.081 kb on + strand, within A4249_RS11365
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C) remove 2,287,665 + +0.4 2,287,666 - +0.2 2,287,775 + -0.7 2,287,776 - -0.7 2,287,776 - +0.1 2,287,835 + +0.1 2,287,835 + +0.4 2,287,835 + -0.3 2,287,835 + -0.2 2,287,836 - +0.2 2,288,040 + A4249_RS11355 0.32 -1.0 2,288,483 + A4249_RS11355 0.81 +0.4 2,288,483 + A4249_RS11355 0.81 +0.0 2,288,483 + A4249_RS11355 0.81 -0.3 2,288,483 + A4249_RS11355 0.81 -0.2 2,288,483 + A4249_RS11355 0.81 +0.8 2,288,483 + A4249_RS11355 0.81 -0.0 2,288,484 - A4249_RS11355 0.82 +0.3 2,288,484 - A4249_RS11355 0.82 -1.1 2,288,484 - A4249_RS11355 0.82 -0.3 2,288,484 - A4249_RS11355 0.82 -0.6 2,288,484 - A4249_RS11355 0.82 +0.2 2,288,484 - A4249_RS11355 0.82 -1.6 2,288,484 - A4249_RS11355 0.82 -0.5 2,288,484 - A4249_RS11355 0.82 +0.7 2,288,513 + A4249_RS11355 0.85 +0.3 2,288,513 + A4249_RS11355 0.85 +0.2 2,288,513 + A4249_RS11355 0.85 +0.5 2,288,514 - A4249_RS11355 0.85 +0.8 2,288,514 - A4249_RS11355 0.85 +0.6 2,288,514 - A4249_RS11355 0.85 -0.5 2,288,514 - A4249_RS11355 0.85 -0.7 2,288,514 - A4249_RS11355 0.85 +0.2 2,288,633 + +1.3 2,288,633 + -0.3 2,289,512 + +0.1 2,289,686 + +0.5 2,289,686 + -0.5 2,289,686 + +0.8 2,289,687 - -1.3 2,289,838 + A4249_RS11365 0.25 +0.5 2,289,838 + A4249_RS11365 0.25 +1.7 2,289,839 - A4249_RS11365 0.25 -0.1 2,289,903 + A4249_RS11365 0.31 +0.1 2,289,903 + A4249_RS11365 0.31 -0.3 2,289,904 - A4249_RS11365 0.31 -0.5 2,289,904 - A4249_RS11365 0.31 +0.7 2,290,081 + A4249_RS11365 0.49 +0.6
Or see this region's nucleotide sequence