Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09390

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09385 and A4249_RS09390 overlap by 4 nucleotidesA4249_RS09390 and A4249_RS09395 are separated by 50 nucleotidesA4249_RS09395 and A4249_RS09400 overlap by 4 nucleotides A4249_RS09385: A4249_RS09385 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 1,875,622 to 1,876,593 _RS09385 A4249_RS09390: A4249_RS09390 - ATP-binding protein, at 1,876,590 to 1,878,185 _RS09390 A4249_RS09395: A4249_RS09395 - SMC-Scp complex subunit ScpB, at 1,878,236 to 1,878,916 _RS09395 A4249_RS09400: A4249_RS09400 - ScpA family protein, at 1,878,913 to 1,879,731 _RS09400 Position (kb) 1876 1877 1878 1879Strain fitness (log2 ratio) -1 0 1at 1875.609 kb on + strandat 1875.609 kb on + strandat 1875.610 kb on - strandat 1875.610 kb on - strandat 1875.610 kb on - strandat 1876.591 kb on + strandat 1876.592 kb on - strandat 1877.086 kb on - strand, within A4249_RS09390at 1877.086 kb on - strand, within A4249_RS09390at 1877.086 kb on - strand, within A4249_RS09390at 1877.086 kb on - strand, within A4249_RS09390at 1877.086 kb on - strand, within A4249_RS09390at 1877.423 kb on - strand, within A4249_RS09390at 1877.639 kb on + strand, within A4249_RS09390at 1877.639 kb on + strand, within A4249_RS09390at 1877.671 kb on + strand, within A4249_RS09390at 1877.671 kb on + strand, within A4249_RS09390at 1877.671 kb on + strand, within A4249_RS09390at 1877.671 kb on + strand, within A4249_RS09390at 1877.671 kb on + strand, within A4249_RS09390at 1877.671 kb on + strand, within A4249_RS09390at 1877.671 kb on + strand, within A4249_RS09390at 1877.672 kb on - strand, within A4249_RS09390at 1877.672 kb on - strand, within A4249_RS09390at 1877.672 kb on - strand, within A4249_RS09390at 1877.672 kb on - strand, within A4249_RS09390at 1877.672 kb on - strand, within A4249_RS09390at 1877.850 kb on + strand, within A4249_RS09390at 1877.850 kb on + strand, within A4249_RS09390at 1877.851 kb on - strand, within A4249_RS09390at 1877.869 kb on + strand, within A4249_RS09390at 1877.869 kb on + strand, within A4249_RS09390at 1877.905 kb on + strand, within A4249_RS09390at 1877.906 kb on - strand, within A4249_RS09390at 1877.906 kb on - strand, within A4249_RS09390at 1877.906 kb on - strand, within A4249_RS09390at 1877.906 kb on - strand, within A4249_RS09390at 1877.906 kb on - strand, within A4249_RS09390at 1877.929 kb on + strand, within A4249_RS09390at 1877.929 kb on + strand, within A4249_RS09390at 1877.929 kb on + strand, within A4249_RS09390at 1877.929 kb on + strand, within A4249_RS09390at 1877.930 kb on - strand, within A4249_RS09390at 1877.930 kb on - strand, within A4249_RS09390at 1878.194 kb on + strandat 1878.194 kb on + strandat 1878.207 kb on - strandat 1878.207 kb on - strandat 1878.207 kb on - strandat 1878.220 kb on + strandat 1878.220 kb on + strandat 1878.221 kb on - strandat 1878.221 kb on - strandat 1878.423 kb on + strand, within A4249_RS09395at 1878.423 kb on + strand, within A4249_RS09395at 1878.423 kb on + strand, within A4249_RS09395at 1878.424 kb on - strand, within A4249_RS09395at 1878.424 kb on - strand, within A4249_RS09395at 1878.471 kb on + strand, within A4249_RS09395at 1878.471 kb on + strand, within A4249_RS09395at 1878.471 kb on + strand, within A4249_RS09395at 1878.471 kb on + strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.472 kb on - strand, within A4249_RS09395at 1878.609 kb on + strand, within A4249_RS09395at 1878.610 kb on - strand, within A4249_RS09395at 1878.756 kb on + strand, within A4249_RS09395at 1878.757 kb on - strand, within A4249_RS09395at 1878.757 kb on - strand, within A4249_RS09395at 1878.757 kb on - strand, within A4249_RS09395at 1878.757 kb on - strand, within A4249_RS09395at 1878.959 kb on + strandat 1878.959 kb on + strandat 1878.959 kb on + strandat 1878.959 kb on + strandat 1878.959 kb on + strandat 1879.044 kb on + strand, within A4249_RS09400at 1879.044 kb on + strand, within A4249_RS09400

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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1,875,609 + +0.1
1,875,609 + +1.0
1,875,610 - +0.4
1,875,610 - +0.5
1,875,610 - -1.3
1,876,591 + +0.9
1,876,592 - +0.3
1,877,086 - A4249_RS09390 0.31 -0.2
1,877,086 - A4249_RS09390 0.31 +0.5
1,877,086 - A4249_RS09390 0.31 -0.0
1,877,086 - A4249_RS09390 0.31 -0.2
1,877,086 - A4249_RS09390 0.31 +0.3
1,877,423 - A4249_RS09390 0.52 -1.5
1,877,639 + A4249_RS09390 0.66 +0.4
1,877,639 + A4249_RS09390 0.66 +1.0
1,877,671 + A4249_RS09390 0.68 -0.0
1,877,671 + A4249_RS09390 0.68 -0.1
1,877,671 + A4249_RS09390 0.68 +0.2
1,877,671 + A4249_RS09390 0.68 -0.2
1,877,671 + A4249_RS09390 0.68 -0.4
1,877,671 + A4249_RS09390 0.68 -1.4
1,877,671 + A4249_RS09390 0.68 +0.7
1,877,672 - A4249_RS09390 0.68 +0.1
1,877,672 - A4249_RS09390 0.68 +0.1
1,877,672 - A4249_RS09390 0.68 +0.1
1,877,672 - A4249_RS09390 0.68 +0.1
1,877,672 - A4249_RS09390 0.68 +0.6
1,877,850 + A4249_RS09390 0.79 -0.7
1,877,850 + A4249_RS09390 0.79 -0.0
1,877,851 - A4249_RS09390 0.79 +0.2
1,877,869 + A4249_RS09390 0.80 +0.8
1,877,869 + A4249_RS09390 0.80 +0.5
1,877,905 + A4249_RS09390 0.82 +0.4
1,877,906 - A4249_RS09390 0.82 -0.0
1,877,906 - A4249_RS09390 0.82 -0.0
1,877,906 - A4249_RS09390 0.82 -0.3
1,877,906 - A4249_RS09390 0.82 -0.6
1,877,906 - A4249_RS09390 0.82 +0.1
1,877,929 + A4249_RS09390 0.84 +0.2
1,877,929 + A4249_RS09390 0.84 +0.2
1,877,929 + A4249_RS09390 0.84 -0.1
1,877,929 + A4249_RS09390 0.84 -1.2
1,877,930 - A4249_RS09390 0.84 -0.6
1,877,930 - A4249_RS09390 0.84 +0.1
1,878,194 + -0.3
1,878,194 + +0.1
1,878,207 - +0.6
1,878,207 - -0.3
1,878,207 - -0.3
1,878,220 + -0.1
1,878,220 + -0.1
1,878,221 - -0.0
1,878,221 - -0.1
1,878,423 + A4249_RS09395 0.27 +1.4
1,878,423 + A4249_RS09395 0.27 +0.7
1,878,423 + A4249_RS09395 0.27 -0.1
1,878,424 - A4249_RS09395 0.28 -1.5
1,878,424 - A4249_RS09395 0.28 +0.6
1,878,471 + A4249_RS09395 0.35 +1.3
1,878,471 + A4249_RS09395 0.35 +0.7
1,878,471 + A4249_RS09395 0.35 -0.5
1,878,471 + A4249_RS09395 0.35 +0.2
1,878,472 - A4249_RS09395 0.35 -0.4
1,878,472 - A4249_RS09395 0.35 -0.0
1,878,472 - A4249_RS09395 0.35 +0.3
1,878,472 - A4249_RS09395 0.35 -0.3
1,878,472 - A4249_RS09395 0.35 +0.1
1,878,472 - A4249_RS09395 0.35 -1.4
1,878,472 - A4249_RS09395 0.35 +0.8
1,878,472 - A4249_RS09395 0.35 -0.5
1,878,472 - A4249_RS09395 0.35 -0.2
1,878,472 - A4249_RS09395 0.35 -0.7
1,878,472 - A4249_RS09395 0.35 -0.6
1,878,472 - A4249_RS09395 0.35 +0.0
1,878,609 + A4249_RS09395 0.55 -0.6
1,878,610 - A4249_RS09395 0.55 +0.4
1,878,756 + A4249_RS09395 0.76 +1.1
1,878,757 - A4249_RS09395 0.77 +0.1
1,878,757 - A4249_RS09395 0.77 -0.3
1,878,757 - A4249_RS09395 0.77 +0.0
1,878,757 - A4249_RS09395 0.77 -1.6
1,878,959 + +0.7
1,878,959 + -1.4
1,878,959 + +0.2
1,878,959 + -1.0
1,878,959 + -0.1
1,879,044 + A4249_RS09400 0.16 -0.9
1,879,044 + A4249_RS09400 0.16 -1.0

Or see this region's nucleotide sequence