Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS09015

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS09005 and A4249_RS09010 are separated by 86 nucleotidesA4249_RS09010 and A4249_RS09015 are separated by 49 nucleotidesA4249_RS09015 and A4249_RS16935 are separated by 67 nucleotidesA4249_RS16935 and A4249_RS09020 overlap by 67 nucleotides A4249_RS09005: A4249_RS09005 - 50S ribosomal protein L25/general stress protein Ctc, at 1,805,362 to 1,805,994 _RS09005 A4249_RS09010: A4249_RS09010 - aminoacyl-tRNA hydrolase, at 1,806,081 to 1,806,689 _RS09010 A4249_RS09015: A4249_RS09015 - hypothetical protein, at 1,806,739 to 1,807,125 _RS09015 A4249_RS16935: A4249_RS16935 - Plug domain-containing protein, at 1,807,193 to 1,807,714 _RS16935 A4249_RS09020: A4249_RS09020 - TonB-dependent receptor, at 1,807,648 to 1,809,291 _RS09020 Position (kb) 1806 1807 1808Strain fitness (log2 ratio) -2 -1 0 1at 1806.688 kb on - strandat 1806.705 kb on - strandat 1806.728 kb on - strandat 1806.728 kb on - strandat 1807.045 kb on + strand, within A4249_RS09015at 1807.046 kb on - strand, within A4249_RS09015at 1807.046 kb on - strand, within A4249_RS09015at 1807.046 kb on - strand, within A4249_RS09015at 1807.046 kb on - strand, within A4249_RS09015at 1807.208 kb on - strandat 1807.419 kb on - strand, within A4249_RS16935at 1807.419 kb on - strand, within A4249_RS16935at 1807.829 kb on - strand, within A4249_RS09020at 1807.829 kb on - strand, within A4249_RS09020at 1808.038 kb on - strand, within A4249_RS09020at 1808.038 kb on - strand, within A4249_RS09020at 1808.038 kb on - strand, within A4249_RS09020at 1808.038 kb on - strand, within A4249_RS09020

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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1,806,688 - +0.0
1,806,705 - -0.4
1,806,728 - -0.3
1,806,728 - +0.0
1,807,045 + A4249_RS09015 0.79 -0.1
1,807,046 - A4249_RS09015 0.79 -0.1
1,807,046 - A4249_RS09015 0.79 +0.7
1,807,046 - A4249_RS09015 0.79 +0.1
1,807,046 - A4249_RS09015 0.79 -0.2
1,807,208 - -0.3
1,807,419 - A4249_RS16935 0.43 +0.2
1,807,419 - A4249_RS16935 0.43 -0.2
1,807,829 - A4249_RS09020 0.11 -1.8
1,807,829 - A4249_RS09020 0.11 -0.3
1,808,038 - A4249_RS09020 0.24 +0.8
1,808,038 - A4249_RS09020 0.24 +1.2
1,808,038 - A4249_RS09020 0.24 +0.7
1,808,038 - A4249_RS09020 0.24 +0.5

Or see this region's nucleotide sequence