Experiment: Thymine 0.793 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS04475 and A4249_RS04480 overlap by 4 nucleotides A4249_RS04480 and A4249_RS04485 are separated by 108 nucleotides A4249_RS04485 and A4249_RS04490 are separated by 618 nucleotides
A4249_RS04475: A4249_RS04475 - response regulator transcription factor, at 930,732 to 931,268
_RS04475
A4249_RS04480: A4249_RS04480 - HIT family protein, at 931,265 to 931,702
_RS04480
A4249_RS04485: A4249_RS04485 - phage holin family protein, at 931,811 to 932,167
_RS04485
A4249_RS04490: A4249_RS04490 - cobaltochelatase subunit CobS, at 932,786 to 933,790
_RS04490
Position (kb) 931
932
933 Strain fitness (log2 ratio) -1
0
1
2 at 930.819 kb on + strand, within A4249_RS04475 at 930.819 kb on + strand, within A4249_RS04475 at 930.819 kb on + strand, within A4249_RS04475 at 930.821 kb on + strand, within A4249_RS04475 at 930.821 kb on + strand, within A4249_RS04475 at 930.821 kb on + strand, within A4249_RS04475 at 930.821 kb on + strand, within A4249_RS04475 at 930.968 kb on + strand, within A4249_RS04475 at 931.038 kb on + strand, within A4249_RS04475 at 931.039 kb on - strand, within A4249_RS04475 at 931.039 kb on - strand, within A4249_RS04475 at 931.266 kb on + strand at 931.266 kb on + strand at 931.266 kb on + strand at 931.267 kb on - strand at 931.267 kb on - strand at 931.267 kb on - strand at 931.267 kb on - strand at 931.316 kb on - strand, within A4249_RS04480 at 931.534 kb on + strand, within A4249_RS04480 at 931.534 kb on + strand, within A4249_RS04480 at 931.683 kb on + strand at 931.683 kb on + strand at 931.683 kb on + strand at 931.684 kb on - strand at 931.734 kb on - strand at 931.779 kb on + strand at 931.779 kb on + strand at 931.780 kb on - strand at 931.780 kb on - strand at 931.780 kb on - strand at 931.780 kb on - strand at 931.780 kb on - strand at 931.797 kb on + strand at 931.798 kb on - strand at 931.798 kb on - strand at 931.798 kb on - strand at 931.798 kb on - strand at 931.843 kb on + strand at 931.844 kb on - strand at 931.984 kb on + strand, within A4249_RS04485 at 931.985 kb on - strand, within A4249_RS04485 at 932.166 kb on - strand at 932.265 kb on + strand at 932.265 kb on + strand at 932.265 kb on + strand at 932.265 kb on + strand at 932.265 kb on + strand at 932.265 kb on + strand at 932.265 kb on + strand at 932.265 kb on + strand at 932.265 kb on + strand at 932.265 kb on + strand at 932.265 kb on + strand at 932.265 kb on + strand at 932.265 kb on + strand at 932.265 kb on + strand at 932.265 kb on + strand at 932.265 kb on + strand at 932.266 kb on - strand at 932.266 kb on - strand at 932.266 kb on - strand at 932.266 kb on - strand at 932.266 kb on - strand at 932.266 kb on - strand at 932.266 kb on - strand at 932.266 kb on - strand at 932.266 kb on - strand at 932.266 kb on - strand at 932.266 kb on - strand at 932.266 kb on - strand at 932.266 kb on - strand at 932.266 kb on - strand at 932.266 kb on - strand at 932.268 kb on - strand at 932.377 kb on + strand at 932.377 kb on + strand at 932.377 kb on + strand at 932.377 kb on + strand at 932.377 kb on + strand at 932.377 kb on + strand at 932.377 kb on + strand at 932.377 kb on + strand at 932.377 kb on + strand at 932.378 kb on - strand at 932.378 kb on - strand at 932.378 kb on - strand at 932.378 kb on - strand at 932.378 kb on - strand at 932.378 kb on - strand at 932.378 kb on - strand at 932.378 kb on - strand at 932.378 kb on - strand at 932.415 kb on + strand at 932.415 kb on + strand at 932.415 kb on + strand at 932.415 kb on + strand at 932.416 kb on - strand at 932.416 kb on - strand at 932.472 kb on + strand at 932.472 kb on + strand at 932.473 kb on - strand at 932.473 kb on - strand at 932.473 kb on - strand at 932.473 kb on - strand at 932.559 kb on - strand at 932.559 kb on - strand at 932.607 kb on + strand at 932.608 kb on - strand at 932.760 kb on + strand at 932.760 kb on + strand at 932.760 kb on + strand at 932.760 kb on + strand at 932.761 kb on - strand at 932.761 kb on - strand at 932.761 kb on - strand at 932.781 kb on + strand at 932.781 kb on + strand at 932.781 kb on + strand at 932.782 kb on - strand at 932.782 kb on - strand at 932.782 kb on - strand at 932.788 kb on - strand at 932.788 kb on - strand at 932.844 kb on + strand at 932.844 kb on + strand at 932.844 kb on + strand at 932.915 kb on + strand, within A4249_RS04490 at 932.915 kb on + strand, within A4249_RS04490 at 932.915 kb on + strand, within A4249_RS04490 at 933.121 kb on - strand, within A4249_RS04490
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C) remove 930,819 + A4249_RS04475 0.16 +0.8 930,819 + A4249_RS04475 0.16 +0.1 930,819 + A4249_RS04475 0.16 -0.9 930,821 + A4249_RS04475 0.17 +0.1 930,821 + A4249_RS04475 0.17 +1.7 930,821 + A4249_RS04475 0.17 +0.3 930,821 + A4249_RS04475 0.17 -0.3 930,968 + A4249_RS04475 0.44 -1.5 931,038 + A4249_RS04475 0.57 -0.3 931,039 - A4249_RS04475 0.57 -0.1 931,039 - A4249_RS04475 0.57 +0.1 931,266 + -0.2 931,266 + -0.4 931,266 + +0.1 931,267 - -0.1 931,267 - +0.5 931,267 - -0.2 931,267 - -0.1 931,316 - A4249_RS04480 0.12 +0.4 931,534 + A4249_RS04480 0.61 -0.8 931,534 + A4249_RS04480 0.61 +0.3 931,683 + +0.3 931,683 + -0.9 931,683 + -0.1 931,684 - -0.8 931,734 - +0.1 931,779 + +0.0 931,779 + -0.3 931,780 - -0.4 931,780 - -0.6 931,780 - -0.8 931,780 - -0.3 931,780 - -1.0 931,797 + +0.0 931,798 - -0.4 931,798 - -0.4 931,798 - +1.1 931,798 - -1.2 931,843 + -0.3 931,844 - -0.0 931,984 + A4249_RS04485 0.48 +0.6 931,985 - A4249_RS04485 0.49 +0.3 932,166 - +1.1 932,265 + -0.4 932,265 + -0.1 932,265 + +0.3 932,265 + +1.1 932,265 + -0.1 932,265 + +1.3 932,265 + +0.5 932,265 + +0.2 932,265 + -1.1 932,265 + +1.4 932,265 + +0.4 932,265 + -0.1 932,265 + -0.3 932,265 + +2.4 932,265 + +0.1 932,265 + +0.7 932,266 - +0.1 932,266 - -0.5 932,266 - -0.5 932,266 - +0.9 932,266 - +0.4 932,266 - -0.1 932,266 - -0.5 932,266 - +0.8 932,266 - +0.1 932,266 - -0.8 932,266 - +0.3 932,266 - -0.0 932,266 - +0.1 932,266 - -0.3 932,266 - +0.7 932,268 - +0.3 932,377 + +0.9 932,377 + -0.1 932,377 + +0.1 932,377 + -0.1 932,377 + -1.0 932,377 + -0.4 932,377 + +0.2 932,377 + -1.5 932,377 + -0.2 932,378 - +1.0 932,378 - +0.4 932,378 - -0.5 932,378 - -0.5 932,378 - +1.0 932,378 - -0.1 932,378 - -0.5 932,378 - -0.8 932,378 - +0.4 932,415 + +0.7 932,415 + +0.5 932,415 + +0.2 932,415 + +0.1 932,416 - -0.5 932,416 - +0.7 932,472 + -0.4 932,472 + +0.6 932,473 - +0.6 932,473 - +0.2 932,473 - +0.0 932,473 - -0.4 932,559 - +0.5 932,559 - +0.2 932,607 + -1.7 932,608 - +0.2 932,760 + +0.2 932,760 + -1.0 932,760 + -0.4 932,760 + +0.4 932,761 - -0.5 932,761 - -0.6 932,761 - -1.1 932,781 + -0.5 932,781 + -1.3 932,781 + -0.5 932,782 - -0.3 932,782 - +0.4 932,782 - -0.5 932,788 - -0.8 932,788 - -0.2 932,844 + +0.4 932,844 + -0.8 932,844 + +1.3 932,915 + A4249_RS04490 0.13 -0.1 932,915 + A4249_RS04490 0.13 -0.3 932,915 + A4249_RS04490 0.13 +0.9 933,121 - A4249_RS04490 0.33 -0.1
Or see this region's nucleotide sequence