Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02840

Experiment: Thymine 0.793 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS02835 and A4249_RS02840 are separated by 7 nucleotidesA4249_RS02840 and A4249_RS02845 overlap by 4 nucleotides A4249_RS02835: A4249_RS02835 - MFS transporter, at 599,810 to 601,096 _RS02835 A4249_RS02840: A4249_RS02840 - N-succinylarginine dihydrolase, at 601,104 to 602,441 _RS02840 A4249_RS02845: A4249_RS02845 - succinylglutamate-semialdehyde dehydrogenase, at 602,438 to 603,853 _RS02845 Position (kb) 601 602 603Strain fitness (log2 ratio) -2 -1 0 1at 600.128 kb on + strand, within A4249_RS02835at 600.128 kb on + strand, within A4249_RS02835at 600.140 kb on - strand, within A4249_RS02835at 600.140 kb on - strand, within A4249_RS02835at 600.140 kb on - strand, within A4249_RS02835at 600.147 kb on - strand, within A4249_RS02835at 600.147 kb on - strand, within A4249_RS02835at 600.301 kb on + strand, within A4249_RS02835at 600.301 kb on + strand, within A4249_RS02835at 600.301 kb on + strand, within A4249_RS02835at 600.301 kb on + strand, within A4249_RS02835at 600.301 kb on + strand, within A4249_RS02835at 600.301 kb on + strand, within A4249_RS02835at 600.302 kb on - strand, within A4249_RS02835at 600.302 kb on - strand, within A4249_RS02835at 600.302 kb on - strand, within A4249_RS02835at 600.302 kb on - strand, within A4249_RS02835at 600.302 kb on - strand, within A4249_RS02835at 600.302 kb on - strand, within A4249_RS02835at 600.302 kb on - strand, within A4249_RS02835at 600.324 kb on + strand, within A4249_RS02835at 600.324 kb on + strand, within A4249_RS02835at 600.324 kb on + strand, within A4249_RS02835at 600.324 kb on + strand, within A4249_RS02835at 600.324 kb on + strand, within A4249_RS02835at 600.324 kb on + strand, within A4249_RS02835at 600.324 kb on + strand, within A4249_RS02835at 600.324 kb on + strand, within A4249_RS02835at 600.324 kb on + strand, within A4249_RS02835at 600.325 kb on - strand, within A4249_RS02835at 600.325 kb on - strand, within A4249_RS02835at 600.325 kb on - strand, within A4249_RS02835at 600.333 kb on + strand, within A4249_RS02835at 600.333 kb on + strand, within A4249_RS02835at 600.333 kb on + strand, within A4249_RS02835at 600.333 kb on + strand, within A4249_RS02835at 600.333 kb on + strand, within A4249_RS02835at 600.333 kb on + strand, within A4249_RS02835at 600.334 kb on - strand, within A4249_RS02835at 600.334 kb on - strand, within A4249_RS02835at 600.334 kb on - strand, within A4249_RS02835at 600.334 kb on - strand, within A4249_RS02835at 600.334 kb on - strand, within A4249_RS02835at 600.334 kb on - strand, within A4249_RS02835at 600.334 kb on - strand, within A4249_RS02835at 600.334 kb on - strand, within A4249_RS02835at 600.334 kb on - strand, within A4249_RS02835at 600.334 kb on - strand, within A4249_RS02835at 600.339 kb on + strand, within A4249_RS02835at 600.339 kb on + strand, within A4249_RS02835at 600.339 kb on + strand, within A4249_RS02835at 600.339 kb on + strand, within A4249_RS02835at 600.339 kb on + strand, within A4249_RS02835at 600.340 kb on - strand, within A4249_RS02835at 600.340 kb on - strand, within A4249_RS02835at 600.340 kb on - strand, within A4249_RS02835at 600.340 kb on - strand, within A4249_RS02835at 600.340 kb on - strand, within A4249_RS02835at 600.340 kb on - strand, within A4249_RS02835at 600.340 kb on - strand, within A4249_RS02835at 600.454 kb on + strand, within A4249_RS02835at 600.454 kb on + strand, within A4249_RS02835at 600.455 kb on - strand, within A4249_RS02835at 600.455 kb on - strand, within A4249_RS02835at 600.455 kb on - strand, within A4249_RS02835at 600.455 kb on - strand, within A4249_RS02835at 600.455 kb on - strand, within A4249_RS02835at 600.455 kb on - strand, within A4249_RS02835at 600.455 kb on - strand, within A4249_RS02835at 600.624 kb on + strand, within A4249_RS02835at 600.624 kb on + strand, within A4249_RS02835at 600.624 kb on + strand, within A4249_RS02835at 600.625 kb on - strand, within A4249_RS02835at 600.625 kb on - strand, within A4249_RS02835at 600.625 kb on - strand, within A4249_RS02835at 600.625 kb on - strand, within A4249_RS02835at 600.678 kb on + strand, within A4249_RS02835at 600.678 kb on + strand, within A4249_RS02835at 600.678 kb on + strand, within A4249_RS02835at 600.678 kb on + strand, within A4249_RS02835at 600.678 kb on + strand, within A4249_RS02835at 600.678 kb on + strand, within A4249_RS02835at 600.678 kb on + strand, within A4249_RS02835at 600.678 kb on + strand, within A4249_RS02835at 600.678 kb on + strand, within A4249_RS02835at 600.678 kb on + strand, within A4249_RS02835at 600.678 kb on + strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.679 kb on - strand, within A4249_RS02835at 600.696 kb on + strand, within A4249_RS02835at 600.696 kb on + strand, within A4249_RS02835at 600.697 kb on - strand, within A4249_RS02835at 600.775 kb on - strand, within A4249_RS02835at 600.864 kb on + strand, within A4249_RS02835at 600.864 kb on + strand, within A4249_RS02835at 600.864 kb on + strand, within A4249_RS02835at 600.865 kb on - strand, within A4249_RS02835at 600.865 kb on - strand, within A4249_RS02835at 600.865 kb on - strand, within A4249_RS02835at 600.865 kb on - strand, within A4249_RS02835at 600.865 kb on - strand, within A4249_RS02835at 600.865 kb on - strand, within A4249_RS02835at 600.981 kb on + strandat 600.981 kb on + strandat 600.981 kb on + strandat 600.981 kb on + strandat 600.981 kb on + strandat 600.982 kb on - strandat 600.982 kb on - strandat 600.982 kb on - strandat 600.999 kb on + strandat 600.999 kb on + strandat 601.000 kb on - strandat 601.000 kb on - strandat 601.000 kb on - strandat 601.005 kb on + strandat 601.005 kb on + strandat 601.006 kb on - strandat 601.006 kb on - strandat 601.006 kb on - strandat 601.123 kb on + strandat 601.123 kb on + strandat 601.123 kb on + strandat 601.123 kb on + strandat 601.124 kb on - strandat 601.124 kb on - strandat 601.387 kb on + strand, within A4249_RS02840at 601.387 kb on + strand, within A4249_RS02840at 601.387 kb on + strand, within A4249_RS02840at 601.387 kb on + strand, within A4249_RS02840at 601.387 kb on + strand, within A4249_RS02840at 601.387 kb on + strand, within A4249_RS02840at 601.388 kb on - strand, within A4249_RS02840at 601.531 kb on + strand, within A4249_RS02840at 601.531 kb on + strand, within A4249_RS02840at 601.531 kb on + strand, within A4249_RS02840at 601.532 kb on - strand, within A4249_RS02840at 601.532 kb on - strand, within A4249_RS02840at 601.532 kb on - strand, within A4249_RS02840at 602.386 kb on + strandat 602.386 kb on + strandat 602.386 kb on + strandat 602.386 kb on + strandat 602.515 kb on - strandat 602.515 kb on - strandat 602.526 kb on + strandat 602.526 kb on + strandat 602.526 kb on + strandat 602.526 kb on + strandat 602.526 kb on + strandat 602.526 kb on + strandat 602.527 kb on - strandat 602.527 kb on - strandat 602.529 kb on + strandat 602.529 kb on + strandat 602.530 kb on - strandat 602.530 kb on - strandat 602.530 kb on - strandat 602.530 kb on - strandat 602.578 kb on + strandat 602.578 kb on + strandat 602.578 kb on + strandat 602.579 kb on - strandat 602.946 kb on + strand, within A4249_RS02845at 602.946 kb on + strand, within A4249_RS02845at 602.946 kb on + strand, within A4249_RS02845at 602.947 kb on - strand, within A4249_RS02845at 602.947 kb on - strand, within A4249_RS02845at 603.154 kb on + strand, within A4249_RS02845at 603.430 kb on + strand, within A4249_RS02845at 603.430 kb on + strand, within A4249_RS02845

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
remove
600,128 + A4249_RS02835 0.25 +0.6
600,128 + A4249_RS02835 0.25 -0.9
600,140 - A4249_RS02835 0.26 -0.3
600,140 - A4249_RS02835 0.26 +0.5
600,140 - A4249_RS02835 0.26 -0.7
600,147 - A4249_RS02835 0.26 -0.4
600,147 - A4249_RS02835 0.26 -0.1
600,301 + A4249_RS02835 0.38 -0.0
600,301 + A4249_RS02835 0.38 +0.1
600,301 + A4249_RS02835 0.38 +0.2
600,301 + A4249_RS02835 0.38 +0.6
600,301 + A4249_RS02835 0.38 +0.0
600,301 + A4249_RS02835 0.38 +0.0
600,302 - A4249_RS02835 0.38 +0.5
600,302 - A4249_RS02835 0.38 +0.2
600,302 - A4249_RS02835 0.38 +0.2
600,302 - A4249_RS02835 0.38 -0.0
600,302 - A4249_RS02835 0.38 +0.2
600,302 - A4249_RS02835 0.38 -0.0
600,302 - A4249_RS02835 0.38 -0.7
600,324 + A4249_RS02835 0.40 -0.4
600,324 + A4249_RS02835 0.40 -0.6
600,324 + A4249_RS02835 0.40 -1.2
600,324 + A4249_RS02835 0.40 -0.1
600,324 + A4249_RS02835 0.40 -0.2
600,324 + A4249_RS02835 0.40 -1.3
600,324 + A4249_RS02835 0.40 +0.3
600,324 + A4249_RS02835 0.40 -2.2
600,324 + A4249_RS02835 0.40 -0.1
600,325 - A4249_RS02835 0.40 +0.4
600,325 - A4249_RS02835 0.40 -0.1
600,325 - A4249_RS02835 0.40 +0.5
600,333 + A4249_RS02835 0.41 -0.3
600,333 + A4249_RS02835 0.41 -0.1
600,333 + A4249_RS02835 0.41 +1.2
600,333 + A4249_RS02835 0.41 -0.6
600,333 + A4249_RS02835 0.41 -0.3
600,333 + A4249_RS02835 0.41 +0.2
600,334 - A4249_RS02835 0.41 +0.5
600,334 - A4249_RS02835 0.41 -0.1
600,334 - A4249_RS02835 0.41 -0.3
600,334 - A4249_RS02835 0.41 -0.4
600,334 - A4249_RS02835 0.41 +0.2
600,334 - A4249_RS02835 0.41 +0.0
600,334 - A4249_RS02835 0.41 +0.2
600,334 - A4249_RS02835 0.41 +0.4
600,334 - A4249_RS02835 0.41 -0.1
600,334 - A4249_RS02835 0.41 +0.2
600,339 + A4249_RS02835 0.41 +0.6
600,339 + A4249_RS02835 0.41 -0.3
600,339 + A4249_RS02835 0.41 +0.7
600,339 + A4249_RS02835 0.41 -0.0
600,339 + A4249_RS02835 0.41 -0.4
600,340 - A4249_RS02835 0.41 -0.5
600,340 - A4249_RS02835 0.41 -0.2
600,340 - A4249_RS02835 0.41 +0.7
600,340 - A4249_RS02835 0.41 +0.3
600,340 - A4249_RS02835 0.41 -0.7
600,340 - A4249_RS02835 0.41 +0.0
600,340 - A4249_RS02835 0.41 -0.1
600,454 + A4249_RS02835 0.50 +0.2
600,454 + A4249_RS02835 0.50 +0.4
600,455 - A4249_RS02835 0.50 +0.9
600,455 - A4249_RS02835 0.50 -0.5
600,455 - A4249_RS02835 0.50 +0.5
600,455 - A4249_RS02835 0.50 -0.7
600,455 - A4249_RS02835 0.50 +0.2
600,455 - A4249_RS02835 0.50 +0.3
600,455 - A4249_RS02835 0.50 +0.0
600,624 + A4249_RS02835 0.63 -0.3
600,624 + A4249_RS02835 0.63 -2.5
600,624 + A4249_RS02835 0.63 -0.0
600,625 - A4249_RS02835 0.63 -0.3
600,625 - A4249_RS02835 0.63 +0.4
600,625 - A4249_RS02835 0.63 -0.2
600,625 - A4249_RS02835 0.63 -0.0
600,678 + A4249_RS02835 0.67 -0.4
600,678 + A4249_RS02835 0.67 +0.9
600,678 + A4249_RS02835 0.67 +0.5
600,678 + A4249_RS02835 0.67 -0.3
600,678 + A4249_RS02835 0.67 +0.4
600,678 + A4249_RS02835 0.67 -0.0
600,678 + A4249_RS02835 0.67 -0.5
600,678 + A4249_RS02835 0.67 -0.6
600,678 + A4249_RS02835 0.67 +1.7
600,678 + A4249_RS02835 0.67 -0.5
600,678 + A4249_RS02835 0.67 +0.6
600,679 - A4249_RS02835 0.68 -0.3
600,679 - A4249_RS02835 0.68 +0.4
600,679 - A4249_RS02835 0.68 -1.1
600,679 - A4249_RS02835 0.68 -0.3
600,679 - A4249_RS02835 0.68 +0.2
600,679 - A4249_RS02835 0.68 -0.9
600,679 - A4249_RS02835 0.68 +0.2
600,679 - A4249_RS02835 0.68 -0.7
600,679 - A4249_RS02835 0.68 -0.5
600,679 - A4249_RS02835 0.68 -0.8
600,679 - A4249_RS02835 0.68 +0.1
600,679 - A4249_RS02835 0.68 +0.1
600,679 - A4249_RS02835 0.68 +0.6
600,679 - A4249_RS02835 0.68 -0.4
600,679 - A4249_RS02835 0.68 -0.6
600,679 - A4249_RS02835 0.68 -0.1
600,679 - A4249_RS02835 0.68 -0.1
600,679 - A4249_RS02835 0.68 -0.8
600,679 - A4249_RS02835 0.68 +0.3
600,679 - A4249_RS02835 0.68 -0.0
600,679 - A4249_RS02835 0.68 +0.2
600,679 - A4249_RS02835 0.68 -0.0
600,696 + A4249_RS02835 0.69 +0.4
600,696 + A4249_RS02835 0.69 -0.2
600,697 - A4249_RS02835 0.69 -0.2
600,775 - A4249_RS02835 0.75 +0.5
600,864 + A4249_RS02835 0.82 -0.8
600,864 + A4249_RS02835 0.82 +0.4
600,864 + A4249_RS02835 0.82 +0.3
600,865 - A4249_RS02835 0.82 -0.3
600,865 - A4249_RS02835 0.82 +0.5
600,865 - A4249_RS02835 0.82 -0.4
600,865 - A4249_RS02835 0.82 -0.2
600,865 - A4249_RS02835 0.82 +0.4
600,865 - A4249_RS02835 0.82 -0.3
600,981 + -0.5
600,981 + -0.0
600,981 + +0.2
600,981 + +0.1
600,981 + +0.1
600,982 - +0.0
600,982 - -0.1
600,982 - -1.3
600,999 + -0.0
600,999 + +0.2
601,000 - +0.8
601,000 - +0.1
601,000 - +0.5
601,005 + +0.2
601,005 + +0.2
601,006 - +0.5
601,006 - +0.1
601,006 - -0.3
601,123 + +0.5
601,123 + +0.1
601,123 + +1.1
601,123 + -0.6
601,124 - -0.6
601,124 - +0.3
601,387 + A4249_RS02840 0.21 +0.1
601,387 + A4249_RS02840 0.21 -0.4
601,387 + A4249_RS02840 0.21 +0.4
601,387 + A4249_RS02840 0.21 -0.4
601,387 + A4249_RS02840 0.21 -0.2
601,387 + A4249_RS02840 0.21 +0.0
601,388 - A4249_RS02840 0.21 +0.7
601,531 + A4249_RS02840 0.32 -0.4
601,531 + A4249_RS02840 0.32 -0.0
601,531 + A4249_RS02840 0.32 +1.1
601,532 - A4249_RS02840 0.32 +0.5
601,532 - A4249_RS02840 0.32 -1.1
601,532 - A4249_RS02840 0.32 -1.9
602,386 + -0.2
602,386 + +0.5
602,386 + -0.2
602,386 + +0.2
602,515 - +0.5
602,515 - -0.4
602,526 + +1.7
602,526 + -0.1
602,526 + +0.1
602,526 + -0.8
602,526 + -0.3
602,526 + +1.7
602,527 - +0.2
602,527 - +0.4
602,529 + -0.2
602,529 + +0.6
602,530 - -1.0
602,530 - -0.6
602,530 - -0.5
602,530 - +1.7
602,578 + +0.1
602,578 + -1.0
602,578 + +0.4
602,579 - -0.5
602,946 + A4249_RS02845 0.36 +0.4
602,946 + A4249_RS02845 0.36 +0.1
602,946 + A4249_RS02845 0.36 +0.1
602,947 - A4249_RS02845 0.36 +0.7
602,947 - A4249_RS02845 0.36 -1.6
603,154 + A4249_RS02845 0.51 +0.5
603,430 + A4249_RS02845 0.70 -0.2
603,430 + A4249_RS02845 0.70 +0.1

Or see this region's nucleotide sequence