Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02720

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS17070 and A4249_RS16485 overlap by 4 nucleotidesA4249_RS16485 and A4249_RS02710 overlap by 4 nucleotidesA4249_RS02710 and A4249_RS02715 overlap by 4 nucleotidesA4249_RS02715 and A4249_RS02720 overlap by 4 nucleotidesA4249_RS02720 and A4249_RS02725 overlap by 41 nucleotidesA4249_RS02725 and A4249_RS02730 are separated by 218 nucleotides A4249_RS17070: A4249_RS17070 - DUF2793 domain-containing protein, at 576,341 to 577,777 _RS17070 A4249_RS16485: A4249_RS16485 - hypothetical protein, at 577,774 to 577,929 _RS16485 A4249_RS02710: A4249_RS02710 - hypothetical protein, at 577,926 to 578,195 _RS02710 A4249_RS02715: A4249_RS02715 - M15 family metallopeptidase, at 578,192 to 578,575 _RS02715 A4249_RS02720: A4249_RS02720 - hypothetical protein, at 578,572 to 579,051 _RS02720 A4249_RS02725: A4249_RS02725 - hypothetical protein, at 579,011 to 579,193 _RS02725 A4249_RS02730: A4249_RS02730 - flagellin, at 579,412 to 580,230 _RS02730 Position (kb) 578 579 580Strain fitness (log2 ratio) -2 -1 0 1 2at 577.906 kb on + strand, within A4249_RS16485at 577.906 kb on + strand, within A4249_RS16485at 577.907 kb on - strand, within A4249_RS16485at 577.990 kb on - strand, within A4249_RS02710at 577.990 kb on - strand, within A4249_RS02710at 578.115 kb on + strand, within A4249_RS02710at 578.115 kb on + strand, within A4249_RS02710at 578.115 kb on + strand, within A4249_RS02710at 578.116 kb on - strand, within A4249_RS02710at 578.116 kb on - strand, within A4249_RS02710at 578.116 kb on - strand, within A4249_RS02710at 578.116 kb on - strand, within A4249_RS02710at 578.447 kb on + strand, within A4249_RS02715at 578.447 kb on + strand, within A4249_RS02715at 578.447 kb on + strand, within A4249_RS02715at 578.447 kb on + strand, within A4249_RS02715at 578.447 kb on + strand, within A4249_RS02715at 578.447 kb on + strand, within A4249_RS02715at 578.448 kb on - strand, within A4249_RS02715at 578.448 kb on - strand, within A4249_RS02715at 578.448 kb on - strand, within A4249_RS02715at 578.448 kb on - strand, within A4249_RS02715at 578.448 kb on - strand, within A4249_RS02715at 578.448 kb on - strand, within A4249_RS02715at 578.448 kb on - strand, within A4249_RS02715at 578.448 kb on - strand, within A4249_RS02715at 578.588 kb on + strandat 578.588 kb on + strandat 578.588 kb on + strandat 578.588 kb on + strandat 578.588 kb on + strandat 578.588 kb on + strandat 578.589 kb on - strandat 578.589 kb on - strandat 578.589 kb on - strandat 578.589 kb on - strandat 578.824 kb on + strand, within A4249_RS02720at 578.824 kb on + strand, within A4249_RS02720at 578.824 kb on + strand, within A4249_RS02720at 578.824 kb on + strand, within A4249_RS02720at 578.824 kb on + strand, within A4249_RS02720at 578.824 kb on + strand, within A4249_RS02720at 578.824 kb on + strand, within A4249_RS02720at 578.825 kb on - strand, within A4249_RS02720at 578.825 kb on - strand, within A4249_RS02720at 578.825 kb on - strand, within A4249_RS02720at 578.825 kb on - strand, within A4249_RS02720at 578.825 kb on - strand, within A4249_RS02720at 578.825 kb on - strand, within A4249_RS02720at 579.080 kb on + strand, within A4249_RS02725at 579.080 kb on + strand, within A4249_RS02725at 579.080 kb on + strand, within A4249_RS02725at 579.080 kb on + strand, within A4249_RS02725at 579.080 kb on + strand, within A4249_RS02725at 579.080 kb on + strand, within A4249_RS02725at 579.081 kb on - strand, within A4249_RS02725at 579.270 kb on + strandat 579.271 kb on - strandat 579.417 kb on + strandat 579.418 kb on - strandat 579.418 kb on - strandat 579.429 kb on + strandat 579.429 kb on + strandat 579.429 kb on + strandat 579.429 kb on + strandat 579.430 kb on - strandat 579.430 kb on - strandat 579.430 kb on - strandat 579.430 kb on - strandat 579.430 kb on - strandat 579.436 kb on + strandat 579.437 kb on - strandat 579.480 kb on + strandat 579.480 kb on + strandat 579.480 kb on + strandat 579.480 kb on + strandat 579.480 kb on + strandat 579.480 kb on + strandat 579.481 kb on - strandat 579.481 kb on - strandat 579.553 kb on + strand, within A4249_RS02730at 579.553 kb on + strand, within A4249_RS02730at 579.553 kb on + strand, within A4249_RS02730at 579.553 kb on + strand, within A4249_RS02730at 579.553 kb on + strand, within A4249_RS02730at 579.554 kb on - strand, within A4249_RS02730at 579.554 kb on - strand, within A4249_RS02730at 579.554 kb on - strand, within A4249_RS02730at 579.554 kb on - strand, within A4249_RS02730at 579.591 kb on + strand, within A4249_RS02730at 579.592 kb on - strand, within A4249_RS02730at 579.745 kb on + strand, within A4249_RS02730at 579.745 kb on + strand, within A4249_RS02730at 579.745 kb on + strand, within A4249_RS02730at 579.745 kb on + strand, within A4249_RS02730at 579.745 kb on + strand, within A4249_RS02730at 579.745 kb on + strand, within A4249_RS02730at 579.746 kb on - strand, within A4249_RS02730at 579.746 kb on - strand, within A4249_RS02730at 579.746 kb on - strand, within A4249_RS02730at 579.850 kb on - strand, within A4249_RS02730at 579.850 kb on - strand, within A4249_RS02730at 579.874 kb on + strand, within A4249_RS02730at 579.874 kb on + strand, within A4249_RS02730at 579.875 kb on - strand, within A4249_RS02730

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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577,906 + A4249_RS16485 0.85 -0.1
577,906 + A4249_RS16485 0.85 -0.6
577,907 - A4249_RS16485 0.85 +0.2
577,990 - A4249_RS02710 0.24 -0.0
577,990 - A4249_RS02710 0.24 -0.2
578,115 + A4249_RS02710 0.70 -0.3
578,115 + A4249_RS02710 0.70 +0.5
578,115 + A4249_RS02710 0.70 -1.8
578,116 - A4249_RS02710 0.70 -0.2
578,116 - A4249_RS02710 0.70 +0.6
578,116 - A4249_RS02710 0.70 +0.4
578,116 - A4249_RS02710 0.70 +1.5
578,447 + A4249_RS02715 0.66 -0.7
578,447 + A4249_RS02715 0.66 -1.6
578,447 + A4249_RS02715 0.66 -0.1
578,447 + A4249_RS02715 0.66 +0.4
578,447 + A4249_RS02715 0.66 -0.0
578,447 + A4249_RS02715 0.66 +0.4
578,448 - A4249_RS02715 0.67 +0.1
578,448 - A4249_RS02715 0.67 -1.1
578,448 - A4249_RS02715 0.67 -0.2
578,448 - A4249_RS02715 0.67 -0.2
578,448 - A4249_RS02715 0.67 -0.5
578,448 - A4249_RS02715 0.67 -0.1
578,448 - A4249_RS02715 0.67 +0.0
578,448 - A4249_RS02715 0.67 +0.3
578,588 + -0.4
578,588 + -0.0
578,588 + +0.5
578,588 + -0.4
578,588 + -1.3
578,588 + -0.3
578,589 - -0.1
578,589 - +0.5
578,589 - +0.4
578,589 - +0.1
578,824 + A4249_RS02720 0.53 +0.1
578,824 + A4249_RS02720 0.53 +0.2
578,824 + A4249_RS02720 0.53 +0.3
578,824 + A4249_RS02720 0.53 -0.1
578,824 + A4249_RS02720 0.53 +0.9
578,824 + A4249_RS02720 0.53 -1.2
578,824 + A4249_RS02720 0.53 -1.6
578,825 - A4249_RS02720 0.53 -0.4
578,825 - A4249_RS02720 0.53 +0.2
578,825 - A4249_RS02720 0.53 -0.9
578,825 - A4249_RS02720 0.53 +0.7
578,825 - A4249_RS02720 0.53 -0.0
578,825 - A4249_RS02720 0.53 +0.2
579,080 + A4249_RS02725 0.38 +0.7
579,080 + A4249_RS02725 0.38 +0.7
579,080 + A4249_RS02725 0.38 -0.2
579,080 + A4249_RS02725 0.38 +0.7
579,080 + A4249_RS02725 0.38 -0.2
579,080 + A4249_RS02725 0.38 +0.4
579,081 - A4249_RS02725 0.38 -0.1
579,270 + -0.1
579,271 - +0.0
579,417 + +2.0
579,418 - -0.5
579,418 - -0.6
579,429 + +0.2
579,429 + -0.0
579,429 + +0.1
579,429 + +0.2
579,430 - -0.2
579,430 - -0.6
579,430 - -0.3
579,430 - -0.2
579,430 - +0.1
579,436 + -0.1
579,437 - -0.5
579,480 + -0.1
579,480 + +0.2
579,480 + +0.0
579,480 + -0.1
579,480 + +0.0
579,480 + +0.4
579,481 - -0.2
579,481 - +0.2
579,553 + A4249_RS02730 0.17 -0.1
579,553 + A4249_RS02730 0.17 -0.6
579,553 + A4249_RS02730 0.17 +0.1
579,553 + A4249_RS02730 0.17 -0.2
579,553 + A4249_RS02730 0.17 -1.4
579,554 - A4249_RS02730 0.17 +0.5
579,554 - A4249_RS02730 0.17 -0.1
579,554 - A4249_RS02730 0.17 +1.2
579,554 - A4249_RS02730 0.17 +0.3
579,591 + A4249_RS02730 0.22 -0.2
579,592 - A4249_RS02730 0.22 +0.2
579,745 + A4249_RS02730 0.41 -0.2
579,745 + A4249_RS02730 0.41 +0.5
579,745 + A4249_RS02730 0.41 -0.5
579,745 + A4249_RS02730 0.41 -0.1
579,745 + A4249_RS02730 0.41 +0.2
579,745 + A4249_RS02730 0.41 -1.3
579,746 - A4249_RS02730 0.41 -0.0
579,746 - A4249_RS02730 0.41 -0.5
579,746 - A4249_RS02730 0.41 +0.4
579,850 - A4249_RS02730 0.53 +0.2
579,850 - A4249_RS02730 0.53 -0.2
579,874 + A4249_RS02730 0.56 +0.1
579,874 + A4249_RS02730 0.56 -0.6
579,875 - A4249_RS02730 0.57 +0.4

Or see this region's nucleotide sequence