Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02500

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS02490 and A4249_RS02495 overlap by 4 nucleotidesA4249_RS02495 and A4249_RS02500 are separated by 52 nucleotidesA4249_RS02500 and A4249_RS02505 are separated by 42 nucleotides A4249_RS02490: A4249_RS02490 - methylmalonyl-CoA mutase, at 534,248 to 536,407 _RS02490 A4249_RS02495: A4249_RS02495 - methylmalonyl-CoA epimerase, at 536,404 to 536,826 _RS02495 A4249_RS02500: A4249_RS02500 - DUF4232 domain-containing protein, at 536,879 to 537,793 _RS02500 A4249_RS02505: A4249_RS02505 - glycine C-acetyltransferase, at 537,836 to 539,026 _RS02505 Position (kb) 536 537 538Strain fitness (log2 ratio) -2 -1 0 1at 535.896 kb on + strand, within A4249_RS02490at 535.896 kb on + strand, within A4249_RS02490at 535.896 kb on + strand, within A4249_RS02490at 535.896 kb on + strand, within A4249_RS02490at 535.897 kb on - strand, within A4249_RS02490at 535.897 kb on - strand, within A4249_RS02490at 535.897 kb on - strand, within A4249_RS02490at 535.898 kb on + strand, within A4249_RS02490at 535.898 kb on + strand, within A4249_RS02490at 535.898 kb on + strand, within A4249_RS02490at 535.899 kb on - strand, within A4249_RS02490at 535.899 kb on - strand, within A4249_RS02490at 536.285 kb on - strandat 536.465 kb on + strand, within A4249_RS02495at 536.465 kb on + strand, within A4249_RS02495at 536.465 kb on + strand, within A4249_RS02495at 536.465 kb on + strand, within A4249_RS02495at 536.465 kb on + strand, within A4249_RS02495at 536.465 kb on + strand, within A4249_RS02495at 536.465 kb on + strand, within A4249_RS02495at 536.465 kb on + strand, within A4249_RS02495at 536.465 kb on + strand, within A4249_RS02495at 536.465 kb on + strand, within A4249_RS02495at 536.465 kb on + strand, within A4249_RS02495at 536.465 kb on + strand, within A4249_RS02495at 536.465 kb on + strand, within A4249_RS02495at 536.465 kb on + strand, within A4249_RS02495at 536.466 kb on - strand, within A4249_RS02495at 536.466 kb on - strand, within A4249_RS02495at 536.466 kb on - strand, within A4249_RS02495at 536.466 kb on - strand, within A4249_RS02495at 536.466 kb on - strand, within A4249_RS02495at 536.466 kb on - strand, within A4249_RS02495at 536.466 kb on - strand, within A4249_RS02495at 536.466 kb on - strand, within A4249_RS02495at 536.466 kb on - strand, within A4249_RS02495at 536.467 kb on + strand, within A4249_RS02495at 536.467 kb on + strand, within A4249_RS02495at 536.548 kb on - strand, within A4249_RS02495at 536.581 kb on + strand, within A4249_RS02495at 536.581 kb on + strand, within A4249_RS02495at 536.581 kb on + strand, within A4249_RS02495at 536.582 kb on - strand, within A4249_RS02495at 536.582 kb on - strand, within A4249_RS02495at 536.582 kb on - strand, within A4249_RS02495at 536.582 kb on - strand, within A4249_RS02495at 536.582 kb on - strand, within A4249_RS02495at 536.824 kb on + strandat 536.825 kb on - strandat 537.020 kb on + strand, within A4249_RS02500at 537.021 kb on - strand, within A4249_RS02500at 537.021 kb on - strand, within A4249_RS02500at 537.056 kb on + strand, within A4249_RS02500at 537.056 kb on + strand, within A4249_RS02500at 537.056 kb on + strand, within A4249_RS02500at 537.056 kb on + strand, within A4249_RS02500at 537.056 kb on + strand, within A4249_RS02500at 537.057 kb on - strand, within A4249_RS02500at 537.057 kb on - strand, within A4249_RS02500at 537.057 kb on - strand, within A4249_RS02500at 537.057 kb on - strand, within A4249_RS02500at 537.092 kb on - strand, within A4249_RS02500at 537.092 kb on - strand, within A4249_RS02500at 537.101 kb on + strand, within A4249_RS02500at 537.101 kb on + strand, within A4249_RS02500at 537.101 kb on + strand, within A4249_RS02500at 537.101 kb on + strand, within A4249_RS02500at 537.101 kb on + strand, within A4249_RS02500at 537.101 kb on + strand, within A4249_RS02500at 537.101 kb on + strand, within A4249_RS02500at 537.101 kb on + strand, within A4249_RS02500at 537.102 kb on - strand, within A4249_RS02500at 537.102 kb on - strand, within A4249_RS02500at 537.102 kb on - strand, within A4249_RS02500at 537.102 kb on - strand, within A4249_RS02500at 537.102 kb on - strand, within A4249_RS02500at 537.102 kb on - strand, within A4249_RS02500at 537.102 kb on - strand, within A4249_RS02500at 537.102 kb on - strand, within A4249_RS02500at 537.102 kb on - strand, within A4249_RS02500at 537.102 kb on - strand, within A4249_RS02500at 537.102 kb on - strand, within A4249_RS02500at 537.102 kb on - strand, within A4249_RS02500at 537.103 kb on + strand, within A4249_RS02500at 537.103 kb on + strand, within A4249_RS02500at 537.103 kb on + strand, within A4249_RS02500at 537.103 kb on + strand, within A4249_RS02500at 537.103 kb on + strand, within A4249_RS02500at 537.103 kb on + strand, within A4249_RS02500at 537.103 kb on + strand, within A4249_RS02500at 537.104 kb on - strand, within A4249_RS02500at 537.104 kb on - strand, within A4249_RS02500at 537.104 kb on - strand, within A4249_RS02500at 537.104 kb on - strand, within A4249_RS02500at 537.104 kb on - strand, within A4249_RS02500at 537.104 kb on - strand, within A4249_RS02500at 537.141 kb on - strand, within A4249_RS02500at 537.141 kb on - strand, within A4249_RS02500at 537.141 kb on - strand, within A4249_RS02500at 537.358 kb on + strand, within A4249_RS02500at 537.358 kb on + strand, within A4249_RS02500at 537.358 kb on + strand, within A4249_RS02500at 537.439 kb on + strand, within A4249_RS02500at 537.545 kb on + strand, within A4249_RS02500at 537.545 kb on + strand, within A4249_RS02500at 537.545 kb on + strand, within A4249_RS02500at 537.545 kb on + strand, within A4249_RS02500at 537.545 kb on + strand, within A4249_RS02500at 537.545 kb on + strand, within A4249_RS02500at 537.545 kb on + strand, within A4249_RS02500at 537.546 kb on - strand, within A4249_RS02500at 537.546 kb on - strand, within A4249_RS02500at 537.546 kb on - strand, within A4249_RS02500at 537.546 kb on - strand, within A4249_RS02500at 537.546 kb on - strand, within A4249_RS02500at 537.546 kb on - strand, within A4249_RS02500at 537.602 kb on + strand, within A4249_RS02500at 537.602 kb on + strand, within A4249_RS02500at 537.602 kb on + strand, within A4249_RS02500at 537.602 kb on + strand, within A4249_RS02500at 537.602 kb on + strand, within A4249_RS02500at 537.602 kb on + strand, within A4249_RS02500at 537.602 kb on + strand, within A4249_RS02500at 537.602 kb on + strand, within A4249_RS02500at 537.603 kb on - strand, within A4249_RS02500at 537.603 kb on - strand, within A4249_RS02500at 537.603 kb on - strand, within A4249_RS02500at 537.673 kb on - strand, within A4249_RS02500at 537.673 kb on - strand, within A4249_RS02500at 537.823 kb on + strandat 537.823 kb on + strandat 537.823 kb on + strandat 537.851 kb on + strandat 537.851 kb on + strandat 537.851 kb on + strandat 537.851 kb on + strandat 537.851 kb on + strandat 537.852 kb on - strandat 537.852 kb on - strandat 537.986 kb on + strand, within A4249_RS02505at 537.986 kb on + strand, within A4249_RS02505at 537.986 kb on + strand, within A4249_RS02505at 537.986 kb on + strand, within A4249_RS02505at 537.986 kb on + strand, within A4249_RS02505at 537.986 kb on + strand, within A4249_RS02505at 537.986 kb on + strand, within A4249_RS02505at 537.986 kb on + strand, within A4249_RS02505at 537.986 kb on + strand, within A4249_RS02505at 537.986 kb on + strand, within A4249_RS02505at 537.987 kb on - strand, within A4249_RS02505at 537.987 kb on - strand, within A4249_RS02505at 537.987 kb on - strand, within A4249_RS02505at 537.987 kb on - strand, within A4249_RS02505at 537.987 kb on - strand, within A4249_RS02505at 537.987 kb on - strand, within A4249_RS02505at 537.987 kb on - strand, within A4249_RS02505at 537.987 kb on - strand, within A4249_RS02505at 537.987 kb on - strand, within A4249_RS02505at 537.987 kb on - strand, within A4249_RS02505at 537.987 kb on - strand, within A4249_RS02505at 537.987 kb on - strand, within A4249_RS02505at 537.987 kb on - strand, within A4249_RS02505at 537.987 kb on - strand, within A4249_RS02505at 538.127 kb on + strand, within A4249_RS02505at 538.128 kb on - strand, within A4249_RS02505at 538.128 kb on - strand, within A4249_RS02505at 538.128 kb on - strand, within A4249_RS02505at 538.397 kb on + strand, within A4249_RS02505at 538.397 kb on + strand, within A4249_RS02505at 538.397 kb on + strand, within A4249_RS02505at 538.397 kb on + strand, within A4249_RS02505at 538.397 kb on + strand, within A4249_RS02505at 538.398 kb on - strand, within A4249_RS02505at 538.398 kb on - strand, within A4249_RS02505at 538.398 kb on - strand, within A4249_RS02505at 538.398 kb on - strand, within A4249_RS02505at 538.398 kb on - strand, within A4249_RS02505at 538.398 kb on - strand, within A4249_RS02505at 538.400 kb on - strand, within A4249_RS02505at 538.439 kb on + strand, within A4249_RS02505at 538.439 kb on + strand, within A4249_RS02505at 538.439 kb on + strand, within A4249_RS02505at 538.439 kb on + strand, within A4249_RS02505at 538.439 kb on + strand, within A4249_RS02505at 538.440 kb on - strand, within A4249_RS02505at 538.440 kb on - strand, within A4249_RS02505at 538.514 kb on + strand, within A4249_RS02505at 538.515 kb on - strand, within A4249_RS02505at 538.637 kb on + strand, within A4249_RS02505at 538.638 kb on - strand, within A4249_RS02505at 538.638 kb on - strand, within A4249_RS02505at 538.762 kb on + strand, within A4249_RS02505at 538.763 kb on - strand, within A4249_RS02505

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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535,896 + A4249_RS02490 0.76 -0.4
535,896 + A4249_RS02490 0.76 -0.3
535,896 + A4249_RS02490 0.76 +0.6
535,896 + A4249_RS02490 0.76 -0.4
535,897 - A4249_RS02490 0.76 +0.2
535,897 - A4249_RS02490 0.76 +0.4
535,897 - A4249_RS02490 0.76 -0.4
535,898 + A4249_RS02490 0.76 +0.6
535,898 + A4249_RS02490 0.76 -0.1
535,898 + A4249_RS02490 0.76 +0.5
535,899 - A4249_RS02490 0.76 -0.3
535,899 - A4249_RS02490 0.76 -1.0
536,285 - -0.5
536,465 + A4249_RS02495 0.14 +0.6
536,465 + A4249_RS02495 0.14 -0.8
536,465 + A4249_RS02495 0.14 +0.2
536,465 + A4249_RS02495 0.14 +0.1
536,465 + A4249_RS02495 0.14 -1.1
536,465 + A4249_RS02495 0.14 +1.0
536,465 + A4249_RS02495 0.14 +0.3
536,465 + A4249_RS02495 0.14 +0.3
536,465 + A4249_RS02495 0.14 +0.3
536,465 + A4249_RS02495 0.14 -1.0
536,465 + A4249_RS02495 0.14 -0.2
536,465 + A4249_RS02495 0.14 -0.2
536,465 + A4249_RS02495 0.14 +0.8
536,465 + A4249_RS02495 0.14 -0.6
536,466 - A4249_RS02495 0.15 +1.5
536,466 - A4249_RS02495 0.15 -0.2
536,466 - A4249_RS02495 0.15 +0.6
536,466 - A4249_RS02495 0.15 -0.1
536,466 - A4249_RS02495 0.15 +1.5
536,466 - A4249_RS02495 0.15 +0.3
536,466 - A4249_RS02495 0.15 -0.3
536,466 - A4249_RS02495 0.15 +0.2
536,466 - A4249_RS02495 0.15 -1.5
536,467 + A4249_RS02495 0.15 +0.2
536,467 + A4249_RS02495 0.15 -0.4
536,548 - A4249_RS02495 0.34 +0.1
536,581 + A4249_RS02495 0.42 +0.5
536,581 + A4249_RS02495 0.42 -0.5
536,581 + A4249_RS02495 0.42 -1.0
536,582 - A4249_RS02495 0.42 +0.4
536,582 - A4249_RS02495 0.42 +0.6
536,582 - A4249_RS02495 0.42 +0.2
536,582 - A4249_RS02495 0.42 -0.4
536,582 - A4249_RS02495 0.42 +1.2
536,824 + -0.0
536,825 - -0.6
537,020 + A4249_RS02500 0.15 +0.0
537,021 - A4249_RS02500 0.16 +0.2
537,021 - A4249_RS02500 0.16 +0.1
537,056 + A4249_RS02500 0.19 +0.2
537,056 + A4249_RS02500 0.19 +0.6
537,056 + A4249_RS02500 0.19 +0.0
537,056 + A4249_RS02500 0.19 +1.5
537,056 + A4249_RS02500 0.19 -0.8
537,057 - A4249_RS02500 0.19 -0.5
537,057 - A4249_RS02500 0.19 +0.3
537,057 - A4249_RS02500 0.19 +0.1
537,057 - A4249_RS02500 0.19 +0.5
537,092 - A4249_RS02500 0.23 +0.1
537,092 - A4249_RS02500 0.23 -1.8
537,101 + A4249_RS02500 0.24 +0.6
537,101 + A4249_RS02500 0.24 -1.1
537,101 + A4249_RS02500 0.24 -0.6
537,101 + A4249_RS02500 0.24 +0.1
537,101 + A4249_RS02500 0.24 -0.0
537,101 + A4249_RS02500 0.24 +0.7
537,101 + A4249_RS02500 0.24 -0.4
537,101 + A4249_RS02500 0.24 -1.0
537,102 - A4249_RS02500 0.24 -0.5
537,102 - A4249_RS02500 0.24 +1.4
537,102 - A4249_RS02500 0.24 -0.2
537,102 - A4249_RS02500 0.24 -0.1
537,102 - A4249_RS02500 0.24 -0.1
537,102 - A4249_RS02500 0.24 -0.2
537,102 - A4249_RS02500 0.24 +0.5
537,102 - A4249_RS02500 0.24 +0.4
537,102 - A4249_RS02500 0.24 +1.7
537,102 - A4249_RS02500 0.24 +0.7
537,102 - A4249_RS02500 0.24 -0.3
537,102 - A4249_RS02500 0.24 -0.2
537,103 + A4249_RS02500 0.24 -0.9
537,103 + A4249_RS02500 0.24 -0.2
537,103 + A4249_RS02500 0.24 +0.6
537,103 + A4249_RS02500 0.24 +0.4
537,103 + A4249_RS02500 0.24 +0.5
537,103 + A4249_RS02500 0.24 -0.2
537,103 + A4249_RS02500 0.24 +0.6
537,104 - A4249_RS02500 0.25 -1.0
537,104 - A4249_RS02500 0.25 +0.6
537,104 - A4249_RS02500 0.25 +1.1
537,104 - A4249_RS02500 0.25 +0.1
537,104 - A4249_RS02500 0.25 -0.5
537,104 - A4249_RS02500 0.25 -1.5
537,141 - A4249_RS02500 0.29 -0.2
537,141 - A4249_RS02500 0.29 -0.7
537,141 - A4249_RS02500 0.29 +0.4
537,358 + A4249_RS02500 0.52 +0.4
537,358 + A4249_RS02500 0.52 +0.5
537,358 + A4249_RS02500 0.52 -0.1
537,439 + A4249_RS02500 0.61 +0.2
537,545 + A4249_RS02500 0.73 -1.7
537,545 + A4249_RS02500 0.73 -0.2
537,545 + A4249_RS02500 0.73 +0.7
537,545 + A4249_RS02500 0.73 +0.1
537,545 + A4249_RS02500 0.73 +0.7
537,545 + A4249_RS02500 0.73 +0.0
537,545 + A4249_RS02500 0.73 -0.5
537,546 - A4249_RS02500 0.73 -0.5
537,546 - A4249_RS02500 0.73 +0.2
537,546 - A4249_RS02500 0.73 +0.1
537,546 - A4249_RS02500 0.73 -0.5
537,546 - A4249_RS02500 0.73 +0.3
537,546 - A4249_RS02500 0.73 +0.8
537,602 + A4249_RS02500 0.79 -0.0
537,602 + A4249_RS02500 0.79 +0.1
537,602 + A4249_RS02500 0.79 -0.2
537,602 + A4249_RS02500 0.79 -0.3
537,602 + A4249_RS02500 0.79 +0.6
537,602 + A4249_RS02500 0.79 +0.9
537,602 + A4249_RS02500 0.79 -0.0
537,602 + A4249_RS02500 0.79 +0.7
537,603 - A4249_RS02500 0.79 -1.9
537,603 - A4249_RS02500 0.79 +0.2
537,603 - A4249_RS02500 0.79 +0.1
537,673 - A4249_RS02500 0.87 -0.0
537,673 - A4249_RS02500 0.87 -0.0
537,823 + -0.2
537,823 + -0.1
537,823 + +0.3
537,851 + -0.6
537,851 + +0.1
537,851 + +0.2
537,851 + -0.2
537,851 + +0.4
537,852 - +0.6
537,852 - +0.0
537,986 + A4249_RS02505 0.13 +0.5
537,986 + A4249_RS02505 0.13 +0.2
537,986 + A4249_RS02505 0.13 -0.4
537,986 + A4249_RS02505 0.13 -0.5
537,986 + A4249_RS02505 0.13 +0.3
537,986 + A4249_RS02505 0.13 +0.3
537,986 + A4249_RS02505 0.13 +0.2
537,986 + A4249_RS02505 0.13 -0.0
537,986 + A4249_RS02505 0.13 -0.1
537,986 + A4249_RS02505 0.13 +0.2
537,987 - A4249_RS02505 0.13 -0.0
537,987 - A4249_RS02505 0.13 +0.1
537,987 - A4249_RS02505 0.13 -2.0
537,987 - A4249_RS02505 0.13 +0.5
537,987 - A4249_RS02505 0.13 +0.4
537,987 - A4249_RS02505 0.13 -0.5
537,987 - A4249_RS02505 0.13 +0.3
537,987 - A4249_RS02505 0.13 -0.5
537,987 - A4249_RS02505 0.13 -0.9
537,987 - A4249_RS02505 0.13 +0.6
537,987 - A4249_RS02505 0.13 +0.5
537,987 - A4249_RS02505 0.13 +0.1
537,987 - A4249_RS02505 0.13 +0.1
537,987 - A4249_RS02505 0.13 -0.1
538,127 + A4249_RS02505 0.24 -1.7
538,128 - A4249_RS02505 0.25 +0.5
538,128 - A4249_RS02505 0.25 -0.2
538,128 - A4249_RS02505 0.25 -0.5
538,397 + A4249_RS02505 0.47 -0.5
538,397 + A4249_RS02505 0.47 +0.8
538,397 + A4249_RS02505 0.47 -0.7
538,397 + A4249_RS02505 0.47 -0.1
538,397 + A4249_RS02505 0.47 -0.2
538,398 - A4249_RS02505 0.47 -1.3
538,398 - A4249_RS02505 0.47 -0.1
538,398 - A4249_RS02505 0.47 +0.5
538,398 - A4249_RS02505 0.47 -0.5
538,398 - A4249_RS02505 0.47 +0.3
538,398 - A4249_RS02505 0.47 -0.2
538,400 - A4249_RS02505 0.47 -0.2
538,439 + A4249_RS02505 0.51 +0.1
538,439 + A4249_RS02505 0.51 -0.3
538,439 + A4249_RS02505 0.51 +0.1
538,439 + A4249_RS02505 0.51 +0.6
538,439 + A4249_RS02505 0.51 -0.2
538,440 - A4249_RS02505 0.51 -1.3
538,440 - A4249_RS02505 0.51 -1.0
538,514 + A4249_RS02505 0.57 +0.9
538,515 - A4249_RS02505 0.57 +0.1
538,637 + A4249_RS02505 0.67 -0.1
538,638 - A4249_RS02505 0.67 -0.3
538,638 - A4249_RS02505 0.67 -0.3
538,762 + A4249_RS02505 0.78 +0.1
538,763 - A4249_RS02505 0.78 -0.6

Or see this region's nucleotide sequence