Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02340

Experiment: Thymine 0.793 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS02325 and A4249_RS02330 are separated by 87 nucleotidesA4249_RS02330 and A4249_RS02335 are separated by 87 nucleotidesA4249_RS02335 and A4249_RS02340 are separated by 172 nucleotidesA4249_RS02340 and A4249_RS02345 are separated by 137 nucleotides A4249_RS02325: A4249_RS02325 - 23S ribosomal RNA, at 490,399 to 493,177 _RS02325 A4249_RS02330: A4249_RS02330 - 5S ribosomal RNA, at 493,265 to 493,379 _RS02330 A4249_RS02335: A4249_RS02335 - tRNA-Met, at 493,467 to 493,543 _RS02335 A4249_RS02340: A4249_RS02340 - helicase-related protein, at 493,716 to 497,021 _RS02340 A4249_RS02345: A4249_RS02345 - alpha/beta hydrolase, at 497,159 to 498,517 _RS02345 Position (kb) 493 494 495 496 497 498Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 493.611 kb on - strandat 493.638 kb on - strandat 493.638 kb on - strandat 493.638 kb on - strandat 494.062 kb on + strand, within A4249_RS02340at 494.062 kb on + strand, within A4249_RS02340at 494.062 kb on + strand, within A4249_RS02340at 494.062 kb on + strand, within A4249_RS02340at 494.062 kb on + strand, within A4249_RS02340at 494.062 kb on + strand, within A4249_RS02340at 494.063 kb on - strand, within A4249_RS02340at 494.199 kb on - strand, within A4249_RS02340at 494.199 kb on - strand, within A4249_RS02340at 494.199 kb on - strand, within A4249_RS02340at 494.205 kb on + strand, within A4249_RS02340at 494.206 kb on - strand, within A4249_RS02340at 494.242 kb on - strand, within A4249_RS02340at 494.242 kb on - strand, within A4249_RS02340at 494.242 kb on - strand, within A4249_RS02340at 494.242 kb on - strand, within A4249_RS02340at 494.506 kb on + strand, within A4249_RS02340at 494.506 kb on + strand, within A4249_RS02340at 494.507 kb on - strand, within A4249_RS02340at 494.580 kb on + strand, within A4249_RS02340at 494.580 kb on + strand, within A4249_RS02340at 494.580 kb on + strand, within A4249_RS02340at 494.580 kb on + strand, within A4249_RS02340at 494.580 kb on + strand, within A4249_RS02340at 494.580 kb on + strand, within A4249_RS02340at 494.580 kb on + strand, within A4249_RS02340at 494.580 kb on + strand, within A4249_RS02340at 494.580 kb on + strand, within A4249_RS02340at 494.581 kb on - strand, within A4249_RS02340at 494.581 kb on - strand, within A4249_RS02340at 494.581 kb on - strand, within A4249_RS02340at 494.581 kb on - strand, within A4249_RS02340at 494.637 kb on + strand, within A4249_RS02340at 494.637 kb on + strand, within A4249_RS02340at 494.637 kb on + strand, within A4249_RS02340at 494.637 kb on + strand, within A4249_RS02340at 494.637 kb on + strand, within A4249_RS02340at 494.637 kb on + strand, within A4249_RS02340at 494.638 kb on - strand, within A4249_RS02340at 494.638 kb on - strand, within A4249_RS02340at 494.638 kb on - strand, within A4249_RS02340at 494.638 kb on - strand, within A4249_RS02340at 494.638 kb on - strand, within A4249_RS02340at 494.638 kb on - strand, within A4249_RS02340at 494.638 kb on - strand, within A4249_RS02340at 494.830 kb on + strand, within A4249_RS02340at 494.830 kb on + strand, within A4249_RS02340at 494.830 kb on + strand, within A4249_RS02340at 494.830 kb on + strand, within A4249_RS02340at 494.831 kb on - strand, within A4249_RS02340at 494.831 kb on - strand, within A4249_RS02340at 494.831 kb on - strand, within A4249_RS02340at 494.831 kb on - strand, within A4249_RS02340at 494.831 kb on - strand, within A4249_RS02340at 494.854 kb on + strand, within A4249_RS02340at 494.858 kb on + strand, within A4249_RS02340at 494.858 kb on + strand, within A4249_RS02340at 494.859 kb on - strand, within A4249_RS02340at 494.923 kb on + strand, within A4249_RS02340at 494.924 kb on - strand, within A4249_RS02340at 494.992 kb on + strand, within A4249_RS02340at 494.992 kb on + strand, within A4249_RS02340at 494.992 kb on + strand, within A4249_RS02340at 494.992 kb on + strand, within A4249_RS02340at 494.992 kb on + strand, within A4249_RS02340at 494.992 kb on + strand, within A4249_RS02340at 494.993 kb on - strand, within A4249_RS02340at 494.993 kb on - strand, within A4249_RS02340at 494.993 kb on - strand, within A4249_RS02340at 494.993 kb on - strand, within A4249_RS02340at 494.993 kb on - strand, within A4249_RS02340at 494.993 kb on - strand, within A4249_RS02340at 494.993 kb on - strand, within A4249_RS02340at 494.993 kb on - strand, within A4249_RS02340at 495.162 kb on + strand, within A4249_RS02340at 495.163 kb on - strand, within A4249_RS02340at 495.163 kb on - strand, within A4249_RS02340at 495.220 kb on - strand, within A4249_RS02340at 495.260 kb on + strand, within A4249_RS02340at 495.948 kb on - strand, within A4249_RS02340at 496.079 kb on + strand, within A4249_RS02340at 496.102 kb on + strand, within A4249_RS02340at 496.102 kb on + strand, within A4249_RS02340at 496.102 kb on + strand, within A4249_RS02340at 496.102 kb on + strand, within A4249_RS02340at 496.102 kb on + strand, within A4249_RS02340at 496.103 kb on - strand, within A4249_RS02340at 496.103 kb on - strand, within A4249_RS02340at 496.103 kb on - strand, within A4249_RS02340at 496.223 kb on + strand, within A4249_RS02340at 496.223 kb on + strand, within A4249_RS02340at 496.223 kb on + strand, within A4249_RS02340at 496.223 kb on + strand, within A4249_RS02340at 496.223 kb on + strand, within A4249_RS02340at 496.224 kb on - strand, within A4249_RS02340at 496.224 kb on - strand, within A4249_RS02340at 496.224 kb on - strand, within A4249_RS02340at 496.224 kb on - strand, within A4249_RS02340at 496.224 kb on - strand, within A4249_RS02340at 496.259 kb on + strand, within A4249_RS02340at 496.259 kb on + strand, within A4249_RS02340at 496.260 kb on - strand, within A4249_RS02340at 496.260 kb on - strand, within A4249_RS02340at 496.260 kb on - strand, within A4249_RS02340at 496.353 kb on + strand, within A4249_RS02340at 496.353 kb on + strand, within A4249_RS02340at 496.353 kb on + strand, within A4249_RS02340at 496.354 kb on - strand, within A4249_RS02340at 496.354 kb on - strand, within A4249_RS02340at 496.354 kb on - strand, within A4249_RS02340at 496.354 kb on - strand, within A4249_RS02340at 496.537 kb on + strand, within A4249_RS02340at 496.537 kb on + strand, within A4249_RS02340at 496.537 kb on + strand, within A4249_RS02340at 496.537 kb on + strand, within A4249_RS02340at 496.537 kb on + strand, within A4249_RS02340at 496.537 kb on + strand, within A4249_RS02340at 496.537 kb on + strand, within A4249_RS02340at 496.538 kb on - strand, within A4249_RS02340at 496.538 kb on - strand, within A4249_RS02340at 496.538 kb on - strand, within A4249_RS02340at 496.538 kb on - strand, within A4249_RS02340at 496.539 kb on + strand, within A4249_RS02340at 496.539 kb on + strand, within A4249_RS02340at 496.539 kb on + strand, within A4249_RS02340at 496.539 kb on + strand, within A4249_RS02340at 496.539 kb on + strand, within A4249_RS02340at 496.540 kb on - strand, within A4249_RS02340at 496.540 kb on - strand, within A4249_RS02340at 496.540 kb on - strand, within A4249_RS02340at 496.540 kb on - strand, within A4249_RS02340at 496.540 kb on - strand, within A4249_RS02340at 496.540 kb on - strand, within A4249_RS02340at 496.573 kb on + strand, within A4249_RS02340at 496.573 kb on + strand, within A4249_RS02340at 496.574 kb on - strand, within A4249_RS02340at 496.574 kb on - strand, within A4249_RS02340at 496.612 kb on + strand, within A4249_RS02340at 496.612 kb on + strand, within A4249_RS02340at 496.647 kb on + strand, within A4249_RS02340at 496.647 kb on + strand, within A4249_RS02340at 496.647 kb on + strand, within A4249_RS02340at 496.647 kb on + strand, within A4249_RS02340at 496.647 kb on + strand, within A4249_RS02340at 496.647 kb on + strand, within A4249_RS02340at 496.647 kb on + strand, within A4249_RS02340at 496.647 kb on + strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.680 kb on + strand, within A4249_RS02340at 496.680 kb on + strand, within A4249_RS02340at 496.680 kb on + strand, within A4249_RS02340at 496.681 kb on - strand, within A4249_RS02340at 497.209 kb on + strandat 497.210 kb on - strandat 497.210 kb on - strandat 497.210 kb on - strandat 497.210 kb on - strandat 497.309 kb on + strand, within A4249_RS02345at 497.454 kb on + strand, within A4249_RS02345at 497.455 kb on - strand, within A4249_RS02345at 497.455 kb on - strand, within A4249_RS02345at 497.455 kb on - strand, within A4249_RS02345at 497.455 kb on - strand, within A4249_RS02345at 497.455 kb on - strand, within A4249_RS02345at 497.534 kb on - strand, within A4249_RS02345at 497.599 kb on + strand, within A4249_RS02345at 497.600 kb on - strand, within A4249_RS02345at 497.813 kb on + strand, within A4249_RS02345at 497.898 kb on + strand, within A4249_RS02345at 497.899 kb on - strand, within A4249_RS02345

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
remove
493,611 - -1.8
493,638 - +0.6
493,638 - -0.0
493,638 - -0.4
494,062 + A4249_RS02340 0.10 -0.4
494,062 + A4249_RS02340 0.10 -0.6
494,062 + A4249_RS02340 0.10 +1.0
494,062 + A4249_RS02340 0.10 -0.8
494,062 + A4249_RS02340 0.10 -0.1
494,062 + A4249_RS02340 0.10 -0.1
494,063 - A4249_RS02340 0.10 -2.1
494,199 - A4249_RS02340 0.15 +0.0
494,199 - A4249_RS02340 0.15 -0.2
494,199 - A4249_RS02340 0.15 -0.9
494,205 + A4249_RS02340 0.15 +0.0
494,206 - A4249_RS02340 0.15 +0.0
494,242 - A4249_RS02340 0.16 +0.1
494,242 - A4249_RS02340 0.16 -0.7
494,242 - A4249_RS02340 0.16 +0.4
494,242 - A4249_RS02340 0.16 -0.1
494,506 + A4249_RS02340 0.24 +0.4
494,506 + A4249_RS02340 0.24 -1.2
494,507 - A4249_RS02340 0.24 -0.1
494,580 + A4249_RS02340 0.26 +0.3
494,580 + A4249_RS02340 0.26 -1.7
494,580 + A4249_RS02340 0.26 -0.0
494,580 + A4249_RS02340 0.26 -0.2
494,580 + A4249_RS02340 0.26 +0.5
494,580 + A4249_RS02340 0.26 -1.6
494,580 + A4249_RS02340 0.26 -1.2
494,580 + A4249_RS02340 0.26 +0.7
494,580 + A4249_RS02340 0.26 -0.1
494,581 - A4249_RS02340 0.26 -1.5
494,581 - A4249_RS02340 0.26 +0.4
494,581 - A4249_RS02340 0.26 -0.3
494,581 - A4249_RS02340 0.26 -0.4
494,637 + A4249_RS02340 0.28 +0.0
494,637 + A4249_RS02340 0.28 -0.3
494,637 + A4249_RS02340 0.28 -0.5
494,637 + A4249_RS02340 0.28 +0.2
494,637 + A4249_RS02340 0.28 -0.7
494,637 + A4249_RS02340 0.28 -0.1
494,638 - A4249_RS02340 0.28 -0.4
494,638 - A4249_RS02340 0.28 +0.1
494,638 - A4249_RS02340 0.28 -0.1
494,638 - A4249_RS02340 0.28 -0.1
494,638 - A4249_RS02340 0.28 +0.3
494,638 - A4249_RS02340 0.28 +0.2
494,638 - A4249_RS02340 0.28 -0.1
494,830 + A4249_RS02340 0.34 +0.2
494,830 + A4249_RS02340 0.34 +0.9
494,830 + A4249_RS02340 0.34 -0.6
494,830 + A4249_RS02340 0.34 +0.5
494,831 - A4249_RS02340 0.34 -0.6
494,831 - A4249_RS02340 0.34 -0.3
494,831 - A4249_RS02340 0.34 +0.1
494,831 - A4249_RS02340 0.34 -0.1
494,831 - A4249_RS02340 0.34 -0.0
494,854 + A4249_RS02340 0.34 +0.4
494,858 + A4249_RS02340 0.35 +1.1
494,858 + A4249_RS02340 0.35 -0.1
494,859 - A4249_RS02340 0.35 +0.5
494,923 + A4249_RS02340 0.37 +0.4
494,924 - A4249_RS02340 0.37 +0.5
494,992 + A4249_RS02340 0.39 +1.5
494,992 + A4249_RS02340 0.39 +0.0
494,992 + A4249_RS02340 0.39 +0.6
494,992 + A4249_RS02340 0.39 +0.8
494,992 + A4249_RS02340 0.39 +0.5
494,992 + A4249_RS02340 0.39 -0.1
494,993 - A4249_RS02340 0.39 -0.4
494,993 - A4249_RS02340 0.39 -0.0
494,993 - A4249_RS02340 0.39 -0.3
494,993 - A4249_RS02340 0.39 +0.0
494,993 - A4249_RS02340 0.39 -0.0
494,993 - A4249_RS02340 0.39 -0.5
494,993 - A4249_RS02340 0.39 -0.1
494,993 - A4249_RS02340 0.39 +0.7
495,162 + A4249_RS02340 0.44 +0.6
495,163 - A4249_RS02340 0.44 -0.6
495,163 - A4249_RS02340 0.44 +0.1
495,220 - A4249_RS02340 0.45 -0.1
495,260 + A4249_RS02340 0.47 +0.2
495,948 - A4249_RS02340 0.68 -1.2
496,079 + A4249_RS02340 0.71 -1.3
496,102 + A4249_RS02340 0.72 -0.2
496,102 + A4249_RS02340 0.72 +1.2
496,102 + A4249_RS02340 0.72 -0.1
496,102 + A4249_RS02340 0.72 -0.2
496,102 + A4249_RS02340 0.72 -0.1
496,103 - A4249_RS02340 0.72 -0.3
496,103 - A4249_RS02340 0.72 -0.6
496,103 - A4249_RS02340 0.72 +0.0
496,223 + A4249_RS02340 0.76 -0.0
496,223 + A4249_RS02340 0.76 -3.3
496,223 + A4249_RS02340 0.76 -0.2
496,223 + A4249_RS02340 0.76 -1.0
496,223 + A4249_RS02340 0.76 -0.1
496,224 - A4249_RS02340 0.76 +0.4
496,224 - A4249_RS02340 0.76 +1.5
496,224 - A4249_RS02340 0.76 -0.8
496,224 - A4249_RS02340 0.76 -0.4
496,224 - A4249_RS02340 0.76 -0.0
496,259 + A4249_RS02340 0.77 -0.6
496,259 + A4249_RS02340 0.77 -0.7
496,260 - A4249_RS02340 0.77 +0.0
496,260 - A4249_RS02340 0.77 +0.8
496,260 - A4249_RS02340 0.77 -0.4
496,353 + A4249_RS02340 0.80 +0.3
496,353 + A4249_RS02340 0.80 +1.2
496,353 + A4249_RS02340 0.80 +0.3
496,354 - A4249_RS02340 0.80 -0.2
496,354 - A4249_RS02340 0.80 -0.5
496,354 - A4249_RS02340 0.80 +0.3
496,354 - A4249_RS02340 0.80 -1.0
496,537 + A4249_RS02340 0.85 +0.8
496,537 + A4249_RS02340 0.85 -0.3
496,537 + A4249_RS02340 0.85 +0.6
496,537 + A4249_RS02340 0.85 -0.0
496,537 + A4249_RS02340 0.85 -0.1
496,537 + A4249_RS02340 0.85 -0.1
496,537 + A4249_RS02340 0.85 -0.4
496,538 - A4249_RS02340 0.85 +0.3
496,538 - A4249_RS02340 0.85 -0.1
496,538 - A4249_RS02340 0.85 -0.3
496,538 - A4249_RS02340 0.85 +0.1
496,539 + A4249_RS02340 0.85 -0.5
496,539 + A4249_RS02340 0.85 +0.4
496,539 + A4249_RS02340 0.85 +1.3
496,539 + A4249_RS02340 0.85 +0.5
496,539 + A4249_RS02340 0.85 -0.4
496,540 - A4249_RS02340 0.85 +0.1
496,540 - A4249_RS02340 0.85 +1.1
496,540 - A4249_RS02340 0.85 -0.4
496,540 - A4249_RS02340 0.85 -0.5
496,540 - A4249_RS02340 0.85 -0.6
496,540 - A4249_RS02340 0.85 -0.5
496,573 + A4249_RS02340 0.86 -0.0
496,573 + A4249_RS02340 0.86 +0.9
496,574 - A4249_RS02340 0.86 -0.5
496,574 - A4249_RS02340 0.86 -0.3
496,612 + A4249_RS02340 0.88 +0.5
496,612 + A4249_RS02340 0.88 +1.1
496,647 + A4249_RS02340 0.89 -0.1
496,647 + A4249_RS02340 0.89 -0.2
496,647 + A4249_RS02340 0.89 +0.4
496,647 + A4249_RS02340 0.89 +1.2
496,647 + A4249_RS02340 0.89 +0.3
496,647 + A4249_RS02340 0.89 +0.4
496,647 + A4249_RS02340 0.89 -0.5
496,647 + A4249_RS02340 0.89 -0.2
496,648 - A4249_RS02340 0.89 +0.9
496,648 - A4249_RS02340 0.89 +0.7
496,648 - A4249_RS02340 0.89 -0.2
496,648 - A4249_RS02340 0.89 +1.3
496,648 - A4249_RS02340 0.89 -0.4
496,648 - A4249_RS02340 0.89 +0.3
496,648 - A4249_RS02340 0.89 -0.0
496,648 - A4249_RS02340 0.89 -0.0
496,648 - A4249_RS02340 0.89 +0.5
496,648 - A4249_RS02340 0.89 -1.5
496,680 + A4249_RS02340 0.90 -0.6
496,680 + A4249_RS02340 0.90 -0.4
496,680 + A4249_RS02340 0.90 +1.9
496,681 - A4249_RS02340 0.90 +0.8
497,209 + +0.3
497,210 - +1.2
497,210 - -0.0
497,210 - +0.6
497,210 - -0.6
497,309 + A4249_RS02345 0.11 -0.2
497,454 + A4249_RS02345 0.22 -0.1
497,455 - A4249_RS02345 0.22 +0.1
497,455 - A4249_RS02345 0.22 -0.1
497,455 - A4249_RS02345 0.22 -0.4
497,455 - A4249_RS02345 0.22 -0.5
497,455 - A4249_RS02345 0.22 +0.4
497,534 - A4249_RS02345 0.28 -0.7
497,599 + A4249_RS02345 0.32 -0.5
497,600 - A4249_RS02345 0.32 -0.0
497,813 + A4249_RS02345 0.48 +0.5
497,898 + A4249_RS02345 0.54 -0.2
497,899 - A4249_RS02345 0.54 +1.0

Or see this region's nucleotide sequence