Experiment: Thymine 0.793 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01315 and A4249_RS01320 overlap by 8 nucleotides A4249_RS01320 and A4249_RS01325 overlap by 4 nucleotides A4249_RS01325 and A4249_RS01330 overlap by 4 nucleotides A4249_RS01330 and A4249_RS01335 overlap by 11 nucleotides A4249_RS01335 and A4249_RS01340 overlap by 4 nucleotides
A4249_RS01315: A4249_RS01315 - hypothetical protein, at 251,620 to 252,417
_RS01315
A4249_RS01320: A4249_RS01320 - hypothetical protein, at 252,410 to 253,387
_RS01320
A4249_RS01325: A4249_RS01325 - hypothetical protein, at 253,384 to 253,725
_RS01325
A4249_RS01330: A4249_RS01330 - hypothetical protein, at 253,722 to 253,952
_RS01330
A4249_RS01335: A4249_RS01335 - hypothetical protein, at 253,942 to 254,337
_RS01335
A4249_RS01340: A4249_RS01340 - phosphoadenosine phosphosulfate reductase family protein, at 254,334 to 255,479
_RS01340
Position (kb) 253
254 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 252.411 kb on + strand at 252.411 kb on + strand at 252.555 kb on + strand, within A4249_RS01320 at 252.555 kb on + strand, within A4249_RS01320 at 252.555 kb on + strand, within A4249_RS01320 at 252.555 kb on + strand, within A4249_RS01320 at 252.555 kb on + strand, within A4249_RS01320 at 252.555 kb on + strand, within A4249_RS01320 at 252.556 kb on - strand, within A4249_RS01320 at 252.556 kb on - strand, within A4249_RS01320 at 252.556 kb on - strand, within A4249_RS01320 at 252.556 kb on - strand, within A4249_RS01320 at 252.556 kb on - strand, within A4249_RS01320 at 252.556 kb on - strand, within A4249_RS01320 at 252.556 kb on - strand, within A4249_RS01320 at 252.910 kb on + strand, within A4249_RS01320 at 252.922 kb on + strand, within A4249_RS01320 at 252.922 kb on + strand, within A4249_RS01320 at 252.922 kb on + strand, within A4249_RS01320 at 252.922 kb on + strand, within A4249_RS01320 at 252.923 kb on - strand, within A4249_RS01320 at 252.923 kb on - strand, within A4249_RS01320 at 252.923 kb on - strand, within A4249_RS01320 at 252.935 kb on + strand, within A4249_RS01320 at 252.935 kb on + strand, within A4249_RS01320 at 252.935 kb on + strand, within A4249_RS01320 at 252.935 kb on + strand, within A4249_RS01320 at 252.935 kb on + strand, within A4249_RS01320 at 252.936 kb on - strand, within A4249_RS01320 at 252.936 kb on - strand, within A4249_RS01320 at 253.107 kb on - strand, within A4249_RS01320 at 253.119 kb on + strand, within A4249_RS01320 at 253.119 kb on + strand, within A4249_RS01320 at 253.119 kb on + strand, within A4249_RS01320 at 253.120 kb on - strand, within A4249_RS01320 at 253.120 kb on - strand, within A4249_RS01320 at 253.120 kb on - strand, within A4249_RS01320 at 253.122 kb on + strand, within A4249_RS01320 at 253.122 kb on + strand, within A4249_RS01320 at 253.123 kb on - strand, within A4249_RS01320 at 253.123 kb on - strand, within A4249_RS01320 at 253.123 kb on - strand, within A4249_RS01320 at 253.123 kb on - strand, within A4249_RS01320 at 253.123 kb on - strand, within A4249_RS01320 at 253.123 kb on - strand, within A4249_RS01320 at 253.129 kb on - strand, within A4249_RS01320 at 253.129 kb on - strand, within A4249_RS01320 at 253.284 kb on + strand, within A4249_RS01320 at 253.284 kb on + strand, within A4249_RS01320 at 253.284 kb on + strand, within A4249_RS01320 at 253.284 kb on + strand, within A4249_RS01320 at 253.284 kb on + strand, within A4249_RS01320 at 253.284 kb on + strand, within A4249_RS01320 at 253.284 kb on + strand, within A4249_RS01320 at 253.285 kb on - strand, within A4249_RS01320 at 253.285 kb on - strand, within A4249_RS01320 at 253.285 kb on - strand, within A4249_RS01320 at 253.285 kb on - strand, within A4249_RS01320 at 253.285 kb on - strand, within A4249_RS01320 at 253.285 kb on - strand, within A4249_RS01320 at 253.285 kb on - strand, within A4249_RS01320 at 253.285 kb on - strand, within A4249_RS01320 at 253.285 kb on - strand, within A4249_RS01320 at 253.500 kb on + strand, within A4249_RS01325 at 253.500 kb on + strand, within A4249_RS01325 at 253.501 kb on - strand, within A4249_RS01325 at 253.501 kb on - strand, within A4249_RS01325 at 253.719 kb on + strand at 253.719 kb on + strand at 253.720 kb on - strand at 253.720 kb on - strand at 253.720 kb on - strand at 253.720 kb on - strand at 253.720 kb on - strand at 253.720 kb on - strand at 253.720 kb on - strand at 253.720 kb on - strand at 253.720 kb on - strand at 253.720 kb on - strand at 253.720 kb on - strand at 254.612 kb on + strand, within A4249_RS01340
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C) remove 252,411 + +0.6 252,411 + -0.4 252,555 + A4249_RS01320 0.15 +0.4 252,555 + A4249_RS01320 0.15 -1.2 252,555 + A4249_RS01320 0.15 -0.4 252,555 + A4249_RS01320 0.15 +1.3 252,555 + A4249_RS01320 0.15 +0.2 252,555 + A4249_RS01320 0.15 -0.1 252,556 - A4249_RS01320 0.15 +0.6 252,556 - A4249_RS01320 0.15 +0.1 252,556 - A4249_RS01320 0.15 -0.2 252,556 - A4249_RS01320 0.15 -0.8 252,556 - A4249_RS01320 0.15 +0.4 252,556 - A4249_RS01320 0.15 +0.7 252,556 - A4249_RS01320 0.15 +0.2 252,910 + A4249_RS01320 0.51 +0.5 252,922 + A4249_RS01320 0.52 -0.6 252,922 + A4249_RS01320 0.52 +0.0 252,922 + A4249_RS01320 0.52 -0.5 252,922 + A4249_RS01320 0.52 -0.7 252,923 - A4249_RS01320 0.52 -3.1 252,923 - A4249_RS01320 0.52 -1.2 252,923 - A4249_RS01320 0.52 -0.1 252,935 + A4249_RS01320 0.54 -0.8 252,935 + A4249_RS01320 0.54 +0.4 252,935 + A4249_RS01320 0.54 -0.2 252,935 + A4249_RS01320 0.54 +0.1 252,935 + A4249_RS01320 0.54 +0.1 252,936 - A4249_RS01320 0.54 +0.4 252,936 - A4249_RS01320 0.54 +0.3 253,107 - A4249_RS01320 0.71 +0.1 253,119 + A4249_RS01320 0.72 +0.6 253,119 + A4249_RS01320 0.72 -0.2 253,119 + A4249_RS01320 0.72 +0.3 253,120 - A4249_RS01320 0.73 -0.1 253,120 - A4249_RS01320 0.73 -0.2 253,120 - A4249_RS01320 0.73 -0.0 253,122 + A4249_RS01320 0.73 +0.1 253,122 + A4249_RS01320 0.73 -0.0 253,123 - A4249_RS01320 0.73 +0.5 253,123 - A4249_RS01320 0.73 +1.1 253,123 - A4249_RS01320 0.73 +0.1 253,123 - A4249_RS01320 0.73 +0.6 253,123 - A4249_RS01320 0.73 -0.6 253,123 - A4249_RS01320 0.73 -0.5 253,129 - A4249_RS01320 0.74 +0.3 253,129 - A4249_RS01320 0.74 -0.8 253,284 + A4249_RS01320 0.89 +0.5 253,284 + A4249_RS01320 0.89 -0.7 253,284 + A4249_RS01320 0.89 -0.8 253,284 + A4249_RS01320 0.89 +1.0 253,284 + A4249_RS01320 0.89 +0.6 253,284 + A4249_RS01320 0.89 -0.8 253,284 + A4249_RS01320 0.89 +0.4 253,285 - A4249_RS01320 0.89 +0.3 253,285 - A4249_RS01320 0.89 -1.0 253,285 - A4249_RS01320 0.89 +0.4 253,285 - A4249_RS01320 0.89 -0.5 253,285 - A4249_RS01320 0.89 -0.0 253,285 - A4249_RS01320 0.89 -0.1 253,285 - A4249_RS01320 0.89 +0.9 253,285 - A4249_RS01320 0.89 +0.8 253,285 - A4249_RS01320 0.89 -0.8 253,500 + A4249_RS01325 0.34 -0.3 253,500 + A4249_RS01325 0.34 -0.4 253,501 - A4249_RS01325 0.34 +0.2 253,501 - A4249_RS01325 0.34 -0.1 253,719 + -0.1 253,719 + +1.9 253,720 - +0.3 253,720 - +0.5 253,720 - -0.2 253,720 - +1.7 253,720 - +0.4 253,720 - -0.4 253,720 - -0.2 253,720 - -0.3 253,720 - +0.2 253,720 - -0.3 253,720 - -0.1 254,612 + A4249_RS01340 0.24 +0.1
Or see this region's nucleotide sequence