Experiment: Thymine 0.793 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS01160 and A4249_RS01165 are separated by 171 nucleotides A4249_RS01165 and A4249_RS01170 are separated by 3 nucleotides A4249_RS01170 and A4249_RS01180 are separated by 320 nucleotides
A4249_RS01160: A4249_RS01160 - DNA adenine methylase, at 221,285 to 222,145
_RS01160
A4249_RS01165: A4249_RS01165 - hypothetical protein, at 222,317 to 222,586
_RS01165
A4249_RS01170: A4249_RS01170 - hypothetical protein, at 222,590 to 222,928
_RS01170
A4249_RS01180: A4249_RS01180 - hypothetical protein, at 223,249 to 225,573
_RS01180
Position (kb) 222
223 Strain fitness (log2 ratio) -2
-1
0
1
2 at 221.383 kb on - strand, within A4249_RS01160 at 221.383 kb on - strand, within A4249_RS01160 at 221.383 kb on - strand, within A4249_RS01160 at 221.554 kb on - strand, within A4249_RS01160 at 221.564 kb on + strand, within A4249_RS01160 at 221.564 kb on + strand, within A4249_RS01160 at 221.564 kb on + strand, within A4249_RS01160 at 221.565 kb on - strand, within A4249_RS01160 at 221.565 kb on - strand, within A4249_RS01160 at 221.568 kb on + strand, within A4249_RS01160 at 221.568 kb on + strand, within A4249_RS01160 at 221.568 kb on + strand, within A4249_RS01160 at 221.568 kb on + strand, within A4249_RS01160 at 221.568 kb on + strand, within A4249_RS01160 at 221.569 kb on - strand, within A4249_RS01160 at 221.569 kb on - strand, within A4249_RS01160 at 221.569 kb on - strand, within A4249_RS01160 at 221.569 kb on - strand, within A4249_RS01160 at 221.569 kb on - strand, within A4249_RS01160 at 221.569 kb on - strand, within A4249_RS01160 at 221.569 kb on - strand, within A4249_RS01160 at 221.569 kb on - strand, within A4249_RS01160 at 221.569 kb on - strand, within A4249_RS01160 at 221.569 kb on - strand, within A4249_RS01160 at 221.592 kb on + strand, within A4249_RS01160 at 221.593 kb on - strand, within A4249_RS01160 at 221.593 kb on - strand, within A4249_RS01160 at 221.721 kb on + strand, within A4249_RS01160 at 221.721 kb on + strand, within A4249_RS01160 at 221.721 kb on + strand, within A4249_RS01160 at 221.722 kb on - strand, within A4249_RS01160 at 221.722 kb on - strand, within A4249_RS01160 at 221.766 kb on + strand, within A4249_RS01160 at 221.766 kb on + strand, within A4249_RS01160 at 221.767 kb on - strand, within A4249_RS01160 at 221.767 kb on - strand, within A4249_RS01160 at 221.767 kb on - strand, within A4249_RS01160 at 221.767 kb on - strand, within A4249_RS01160 at 221.767 kb on - strand, within A4249_RS01160 at 221.767 kb on - strand, within A4249_RS01160 at 222.007 kb on - strand, within A4249_RS01160 at 222.170 kb on + strand at 222.170 kb on + strand at 222.170 kb on + strand at 222.170 kb on + strand at 222.241 kb on + strand at 222.464 kb on + strand, within A4249_RS01165 at 222.464 kb on + strand, within A4249_RS01165 at 222.464 kb on + strand, within A4249_RS01165 at 222.464 kb on + strand, within A4249_RS01165 at 222.464 kb on + strand, within A4249_RS01165 at 222.464 kb on + strand, within A4249_RS01165 at 222.464 kb on + strand, within A4249_RS01165 at 222.464 kb on + strand, within A4249_RS01165 at 222.464 kb on + strand, within A4249_RS01165 at 222.464 kb on + strand, within A4249_RS01165 at 222.464 kb on + strand, within A4249_RS01165 at 222.469 kb on + strand, within A4249_RS01165 at 222.469 kb on + strand, within A4249_RS01165 at 222.469 kb on + strand, within A4249_RS01165 at 222.470 kb on - strand, within A4249_RS01165 at 222.470 kb on - strand, within A4249_RS01165 at 222.470 kb on - strand, within A4249_RS01165 at 222.557 kb on - strand, within A4249_RS01165 at 222.557 kb on - strand, within A4249_RS01165 at 222.557 kb on - strand, within A4249_RS01165 at 222.557 kb on - strand, within A4249_RS01165 at 222.557 kb on - strand, within A4249_RS01165 at 222.596 kb on + strand at 222.597 kb on - strand at 222.945 kb on + strand at 222.945 kb on + strand at 222.946 kb on - strand at 222.946 kb on - strand at 223.076 kb on + strand at 223.076 kb on + strand at 223.076 kb on + strand at 223.148 kb on + strand at 223.149 kb on - strand at 223.171 kb on + strand at 223.171 kb on + strand at 223.171 kb on + strand at 223.171 kb on + strand at 223.171 kb on + strand at 223.172 kb on - strand at 223.172 kb on - strand at 223.172 kb on - strand at 223.243 kb on + strand at 223.243 kb on + strand at 223.243 kb on + strand at 223.243 kb on + strand at 223.243 kb on + strand at 223.243 kb on + strand at 223.243 kb on + strand at 223.244 kb on - strand at 223.244 kb on - strand at 223.244 kb on - strand at 223.244 kb on - strand at 223.246 kb on + strand at 223.246 kb on + strand at 223.246 kb on + strand at 223.246 kb on + strand at 223.246 kb on + strand at 223.246 kb on + strand at 223.246 kb on + strand at 223.246 kb on + strand at 223.246 kb on + strand at 223.246 kb on + strand at 223.247 kb on - strand at 223.247 kb on - strand at 223.247 kb on - strand at 223.247 kb on - strand at 223.247 kb on - strand at 223.247 kb on - strand at 223.247 kb on - strand at 223.247 kb on - strand at 223.247 kb on - strand at 223.247 kb on - strand at 223.247 kb on - strand at 223.247 kb on - strand at 223.247 kb on - strand at 223.247 kb on - strand at 223.250 kb on + strand at 223.251 kb on - strand at 223.264 kb on + strand at 223.264 kb on + strand at 223.264 kb on + strand at 223.265 kb on - strand at 223.265 kb on - strand at 223.265 kb on - strand at 223.265 kb on - strand at 223.265 kb on - strand at 223.265 kb on - strand at 223.265 kb on - strand at 223.265 kb on - strand at 223.270 kb on + strand at 223.270 kb on + strand at 223.271 kb on - strand at 223.271 kb on - strand at 223.305 kb on + strand at 223.305 kb on + strand at 223.306 kb on - strand at 223.306 kb on - strand at 223.306 kb on - strand at 223.306 kb on - strand at 223.306 kb on - strand at 223.306 kb on - strand at 223.358 kb on + strand at 223.358 kb on + strand at 223.358 kb on + strand at 223.359 kb on - strand at 223.359 kb on - strand at 223.376 kb on + strand at 223.524 kb on + strand, within A4249_RS01180 at 223.525 kb on - strand, within A4249_RS01180 at 223.525 kb on - strand, within A4249_RS01180 at 223.573 kb on + strand, within A4249_RS01180 at 223.573 kb on + strand, within A4249_RS01180 at 223.574 kb on - strand, within A4249_RS01180 at 223.574 kb on - strand, within A4249_RS01180
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C) remove 221,383 - A4249_RS01160 0.11 -0.7 221,383 - A4249_RS01160 0.11 -0.2 221,383 - A4249_RS01160 0.11 +0.2 221,554 - A4249_RS01160 0.31 -0.4 221,564 + A4249_RS01160 0.32 +0.5 221,564 + A4249_RS01160 0.32 +1.3 221,564 + A4249_RS01160 0.32 -0.2 221,565 - A4249_RS01160 0.33 -0.7 221,565 - A4249_RS01160 0.33 +0.4 221,568 + A4249_RS01160 0.33 -0.5 221,568 + A4249_RS01160 0.33 -0.4 221,568 + A4249_RS01160 0.33 -0.4 221,568 + A4249_RS01160 0.33 -0.5 221,568 + A4249_RS01160 0.33 +0.1 221,569 - A4249_RS01160 0.33 +0.0 221,569 - A4249_RS01160 0.33 -0.5 221,569 - A4249_RS01160 0.33 +0.5 221,569 - A4249_RS01160 0.33 +0.1 221,569 - A4249_RS01160 0.33 -0.1 221,569 - A4249_RS01160 0.33 +1.8 221,569 - A4249_RS01160 0.33 -0.1 221,569 - A4249_RS01160 0.33 +0.4 221,569 - A4249_RS01160 0.33 +0.1 221,569 - A4249_RS01160 0.33 +1.0 221,592 + A4249_RS01160 0.36 +0.2 221,593 - A4249_RS01160 0.36 +1.1 221,593 - A4249_RS01160 0.36 +0.1 221,721 + A4249_RS01160 0.51 -0.1 221,721 + A4249_RS01160 0.51 -0.6 221,721 + A4249_RS01160 0.51 -0.4 221,722 - A4249_RS01160 0.51 -0.1 221,722 - A4249_RS01160 0.51 +0.7 221,766 + A4249_RS01160 0.56 +0.7 221,766 + A4249_RS01160 0.56 +0.4 221,767 - A4249_RS01160 0.56 +0.6 221,767 - A4249_RS01160 0.56 +0.2 221,767 - A4249_RS01160 0.56 -1.2 221,767 - A4249_RS01160 0.56 -0.4 221,767 - A4249_RS01160 0.56 +0.6 221,767 - A4249_RS01160 0.56 +0.2 222,007 - A4249_RS01160 0.84 -1.0 222,170 + +0.4 222,170 + -0.2 222,170 + -0.4 222,170 + -0.8 222,241 + +0.9 222,464 + A4249_RS01165 0.54 -0.2 222,464 + A4249_RS01165 0.54 -0.7 222,464 + A4249_RS01165 0.54 +0.3 222,464 + A4249_RS01165 0.54 +0.2 222,464 + A4249_RS01165 0.54 -1.2 222,464 + A4249_RS01165 0.54 -0.0 222,464 + A4249_RS01165 0.54 -0.5 222,464 + A4249_RS01165 0.54 -0.9 222,464 + A4249_RS01165 0.54 +0.2 222,464 + A4249_RS01165 0.54 -0.2 222,464 + A4249_RS01165 0.54 +0.1 222,469 + A4249_RS01165 0.56 +0.2 222,469 + A4249_RS01165 0.56 -0.6 222,469 + A4249_RS01165 0.56 +0.7 222,470 - A4249_RS01165 0.57 -0.2 222,470 - A4249_RS01165 0.57 +0.4 222,470 - A4249_RS01165 0.57 -0.3 222,557 - A4249_RS01165 0.89 -0.3 222,557 - A4249_RS01165 0.89 -0.5 222,557 - A4249_RS01165 0.89 -1.8 222,557 - A4249_RS01165 0.89 -0.0 222,557 - A4249_RS01165 0.89 +1.0 222,596 + -0.0 222,597 - +0.0 222,945 + +0.1 222,945 + -0.0 222,946 - +1.0 222,946 - +0.0 223,076 + +0.6 223,076 + -0.8 223,076 + -1.4 223,148 + -1.0 223,149 - -0.1 223,171 + +0.5 223,171 + -0.5 223,171 + -0.6 223,171 + -0.4 223,171 + -1.6 223,172 - +0.5 223,172 - +0.5 223,172 - +0.7 223,243 + +0.1 223,243 + +1.6 223,243 + +1.2 223,243 + -0.0 223,243 + +0.1 223,243 + -0.3 223,243 + -0.1 223,244 - -0.4 223,244 - +0.6 223,244 - +1.1 223,244 - +0.1 223,246 + +0.1 223,246 + +0.1 223,246 + +0.1 223,246 + +0.4 223,246 + -0.3 223,246 + -0.9 223,246 + -0.0 223,246 + +0.5 223,246 + +0.1 223,246 + +0.0 223,247 - +0.5 223,247 - +0.3 223,247 - -0.9 223,247 - +0.5 223,247 - +0.1 223,247 - -0.6 223,247 - +0.7 223,247 - -0.1 223,247 - +0.3 223,247 - -0.0 223,247 - -0.8 223,247 - -0.5 223,247 - -0.4 223,247 - -0.8 223,250 + -0.2 223,251 - -0.1 223,264 + -0.9 223,264 + -0.1 223,264 + +0.6 223,265 - -0.2 223,265 - -0.2 223,265 - +0.3 223,265 - -0.3 223,265 - +1.1 223,265 - -1.0 223,265 - +0.3 223,265 - -0.5 223,270 + +0.2 223,270 + -1.0 223,271 - -0.4 223,271 - -0.2 223,305 + -0.3 223,305 + -0.1 223,306 - -0.3 223,306 - +0.3 223,306 - +0.6 223,306 - -1.6 223,306 - +0.0 223,306 - -0.7 223,358 + -0.3 223,358 + -0.2 223,358 + -0.6 223,359 - +0.5 223,359 - -1.5 223,376 + +0.2 223,524 + A4249_RS01180 0.12 +0.0 223,525 - A4249_RS01180 0.12 -0.3 223,525 - A4249_RS01180 0.12 -0.3 223,573 + A4249_RS01180 0.14 +0.6 223,573 + A4249_RS01180 0.14 +0.1 223,574 - A4249_RS01180 0.14 -1.0 223,574 - A4249_RS01180 0.14 +0.5
Or see this region's nucleotide sequence