Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS01015

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS01010 and A4249_RS01015 are separated by 52 nucleotidesA4249_RS01015 and A4249_RS01020 overlap by 1 nucleotidesA4249_RS01020 and A4249_RS01025 are separated by 60 nucleotides A4249_RS01010: A4249_RS01010 - capsular polysaccharide biosynthesis protein, at 190,603 to 192,657 _RS01010 A4249_RS01015: A4249_RS01015 - CoA ester lyase, at 192,710 to 193,546 _RS01015 A4249_RS01020: A4249_RS01020 - SDR family NAD(P)-dependent oxidoreductase, at 193,546 to 194,223 _RS01020 A4249_RS01025: A4249_RS01025 - GAF domain-containing protein, at 194,284 to 194,781 _RS01025 Position (kb) 192 193 194Strain fitness (log2 ratio) -2 -1 0 1at 191.757 kb on - strand, within A4249_RS01010at 191.765 kb on + strand, within A4249_RS01010at 191.861 kb on + strand, within A4249_RS01010at 191.862 kb on - strand, within A4249_RS01010at 191.862 kb on - strand, within A4249_RS01010at 191.862 kb on - strand, within A4249_RS01010at 191.936 kb on + strand, within A4249_RS01010at 191.936 kb on + strand, within A4249_RS01010at 191.936 kb on + strand, within A4249_RS01010at 191.936 kb on + strand, within A4249_RS01010at 191.936 kb on + strand, within A4249_RS01010at 191.936 kb on + strand, within A4249_RS01010at 191.936 kb on + strand, within A4249_RS01010at 191.936 kb on + strand, within A4249_RS01010at 191.936 kb on + strand, within A4249_RS01010at 191.936 kb on + strand, within A4249_RS01010at 191.937 kb on - strand, within A4249_RS01010at 191.937 kb on - strand, within A4249_RS01010at 191.937 kb on - strand, within A4249_RS01010at 191.937 kb on - strand, within A4249_RS01010at 191.937 kb on - strand, within A4249_RS01010at 192.225 kb on + strand, within A4249_RS01010at 192.225 kb on + strand, within A4249_RS01010at 192.226 kb on - strand, within A4249_RS01010at 192.356 kb on + strand, within A4249_RS01010at 192.356 kb on + strand, within A4249_RS01010at 192.356 kb on + strand, within A4249_RS01010at 192.357 kb on - strand, within A4249_RS01010at 192.357 kb on - strand, within A4249_RS01010at 192.357 kb on - strand, within A4249_RS01010at 192.357 kb on - strand, within A4249_RS01010at 192.359 kb on + strand, within A4249_RS01010at 192.359 kb on + strand, within A4249_RS01010at 192.359 kb on + strand, within A4249_RS01010at 192.360 kb on - strand, within A4249_RS01010at 192.360 kb on - strand, within A4249_RS01010at 192.360 kb on - strand, within A4249_RS01010at 192.360 kb on - strand, within A4249_RS01010at 192.360 kb on - strand, within A4249_RS01010at 192.360 kb on - strand, within A4249_RS01010at 192.360 kb on - strand, within A4249_RS01010at 192.360 kb on - strand, within A4249_RS01010at 192.360 kb on - strand, within A4249_RS01010at 192.452 kb on + strandat 192.452 kb on + strandat 192.452 kb on + strandat 192.452 kb on + strandat 192.452 kb on + strandat 192.453 kb on - strandat 192.453 kb on - strandat 192.689 kb on - strandat 192.689 kb on - strandat 192.711 kb on + strandat 192.711 kb on + strandat 192.712 kb on - strandat 192.712 kb on - strandat 192.712 kb on - strandat 192.712 kb on - strandat 192.782 kb on + strandat 192.934 kb on - strand, within A4249_RS01015at 192.934 kb on - strand, within A4249_RS01015at 192.934 kb on - strand, within A4249_RS01015at 193.272 kb on - strand, within A4249_RS01015at 193.496 kb on + strandat 193.497 kb on - strandat 193.497 kb on - strandat 193.515 kb on + strandat 193.515 kb on + strandat 193.515 kb on + strandat 193.515 kb on + strandat 193.515 kb on + strandat 193.515 kb on + strandat 193.515 kb on + strandat 193.516 kb on - strandat 193.516 kb on - strandat 193.516 kb on - strandat 193.516 kb on - strandat 193.516 kb on - strandat 193.516 kb on - strandat 193.516 kb on - strandat 193.516 kb on - strandat 193.516 kb on - strandat 193.516 kb on - strandat 193.516 kb on - strandat 193.796 kb on + strand, within A4249_RS01020at 193.796 kb on + strand, within A4249_RS01020at 193.796 kb on + strand, within A4249_RS01020at 193.796 kb on + strand, within A4249_RS01020at 193.796 kb on + strand, within A4249_RS01020at 193.796 kb on + strand, within A4249_RS01020at 193.796 kb on + strand, within A4249_RS01020at 193.797 kb on - strand, within A4249_RS01020at 193.873 kb on + strand, within A4249_RS01020at 193.874 kb on - strand, within A4249_RS01020at 193.874 kb on - strand, within A4249_RS01020at 193.903 kb on + strand, within A4249_RS01020at 193.904 kb on - strand, within A4249_RS01020at 193.904 kb on - strand, within A4249_RS01020at 194.152 kb on + strand, within A4249_RS01020at 194.152 kb on + strand, within A4249_RS01020at 194.153 kb on - strand, within A4249_RS01020at 194.153 kb on - strand, within A4249_RS01020at 194.199 kb on + strandat 194.200 kb on - strandat 194.250 kb on + strandat 194.250 kb on + strandat 194.250 kb on + strandat 194.250 kb on + strandat 194.250 kb on + strandat 194.250 kb on + strandat 194.250 kb on + strandat 194.250 kb on + strandat 194.250 kb on + strandat 194.250 kb on + strandat 194.250 kb on + strandat 194.251 kb on - strandat 194.251 kb on - strandat 194.321 kb on - strandat 194.321 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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191,757 - A4249_RS01010 0.56 -1.6
191,765 + A4249_RS01010 0.57 -1.1
191,861 + A4249_RS01010 0.61 -0.1
191,862 - A4249_RS01010 0.61 -2.7
191,862 - A4249_RS01010 0.61 -1.0
191,862 - A4249_RS01010 0.61 +0.5
191,936 + A4249_RS01010 0.65 -0.1
191,936 + A4249_RS01010 0.65 -1.4
191,936 + A4249_RS01010 0.65 -0.1
191,936 + A4249_RS01010 0.65 -0.8
191,936 + A4249_RS01010 0.65 -0.2
191,936 + A4249_RS01010 0.65 -0.9
191,936 + A4249_RS01010 0.65 -0.2
191,936 + A4249_RS01010 0.65 -0.9
191,936 + A4249_RS01010 0.65 -0.4
191,936 + A4249_RS01010 0.65 -0.1
191,937 - A4249_RS01010 0.65 -0.1
191,937 - A4249_RS01010 0.65 -2.0
191,937 - A4249_RS01010 0.65 -2.2
191,937 - A4249_RS01010 0.65 -0.8
191,937 - A4249_RS01010 0.65 +0.3
192,225 + A4249_RS01010 0.79 -1.6
192,225 + A4249_RS01010 0.79 +0.1
192,226 - A4249_RS01010 0.79 -1.0
192,356 + A4249_RS01010 0.85 -0.1
192,356 + A4249_RS01010 0.85 +0.3
192,356 + A4249_RS01010 0.85 -1.9
192,357 - A4249_RS01010 0.85 -0.1
192,357 - A4249_RS01010 0.85 +1.3
192,357 - A4249_RS01010 0.85 -2.1
192,357 - A4249_RS01010 0.85 +1.1
192,359 + A4249_RS01010 0.85 +0.1
192,359 + A4249_RS01010 0.85 +0.7
192,359 + A4249_RS01010 0.85 -0.6
192,360 - A4249_RS01010 0.85 +0.7
192,360 - A4249_RS01010 0.85 +0.5
192,360 - A4249_RS01010 0.85 +0.5
192,360 - A4249_RS01010 0.85 +0.7
192,360 - A4249_RS01010 0.85 -0.6
192,360 - A4249_RS01010 0.85 +0.2
192,360 - A4249_RS01010 0.85 -0.3
192,360 - A4249_RS01010 0.85 -1.8
192,360 - A4249_RS01010 0.85 +0.9
192,452 + -0.8
192,452 + +0.5
192,452 + -0.8
192,452 + +0.1
192,452 + -0.5
192,453 - -0.1
192,453 - -1.2
192,689 - -0.2
192,689 - +0.0
192,711 + -0.5
192,711 + -0.8
192,712 - -1.1
192,712 - -0.5
192,712 - -0.8
192,712 - +0.4
192,782 + +0.0
192,934 - A4249_RS01015 0.27 -1.0
192,934 - A4249_RS01015 0.27 +0.0
192,934 - A4249_RS01015 0.27 +0.0
193,272 - A4249_RS01015 0.67 -0.2
193,496 + -0.8
193,497 - -0.1
193,497 - -0.0
193,515 + -0.2
193,515 + +0.0
193,515 + -0.4
193,515 + -0.3
193,515 + -0.0
193,515 + +0.5
193,515 + -0.6
193,516 - -0.3
193,516 - +1.1
193,516 - -0.8
193,516 - +0.1
193,516 - +0.2
193,516 - +0.2
193,516 - +0.3
193,516 - -0.3
193,516 - +0.0
193,516 - -0.1
193,516 - +0.3
193,796 + A4249_RS01020 0.37 -1.8
193,796 + A4249_RS01020 0.37 -0.6
193,796 + A4249_RS01020 0.37 -0.3
193,796 + A4249_RS01020 0.37 -0.2
193,796 + A4249_RS01020 0.37 +0.2
193,796 + A4249_RS01020 0.37 -1.2
193,796 + A4249_RS01020 0.37 +0.5
193,797 - A4249_RS01020 0.37 -0.5
193,873 + A4249_RS01020 0.48 +0.9
193,874 - A4249_RS01020 0.48 +0.4
193,874 - A4249_RS01020 0.48 +0.9
193,903 + A4249_RS01020 0.53 +0.1
193,904 - A4249_RS01020 0.53 -0.3
193,904 - A4249_RS01020 0.53 -0.1
194,152 + A4249_RS01020 0.89 -0.1
194,152 + A4249_RS01020 0.89 +1.6
194,153 - A4249_RS01020 0.90 +0.5
194,153 - A4249_RS01020 0.90 +0.4
194,199 + +0.1
194,200 - +0.1
194,250 + -0.8
194,250 + -1.8
194,250 + +0.6
194,250 + -1.3
194,250 + +0.1
194,250 + -0.4
194,250 + +0.4
194,250 + +1.4
194,250 + -0.0
194,250 + -0.3
194,250 + +0.5
194,251 - +0.6
194,251 - -0.3
194,321 - +0.2
194,321 - -0.1

Or see this region's nucleotide sequence