Experiment: Thymine 0.793 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS00205 and A4249_RS00210 are separated by 36 nucleotides A4249_RS00210 and A4249_RS00215 are separated by 31 nucleotides A4249_RS00215 and A4249_RS00220 are separated by 5 nucleotides A4249_RS00220 and A4249_RS00225 are separated by 158 nucleotides
A4249_RS00205: A4249_RS00205 - helix-turn-helix domain-containing protein, at 35,520 to 36,107
_RS00205
A4249_RS00210: A4249_RS00210 - GNAT family protein, at 36,144 to 36,722
_RS00210
A4249_RS00215: A4249_RS00215 - bifunctional diguanylate cyclase/phosphodiesterase, at 36,754 to 38,421
_RS00215
A4249_RS00220: A4249_RS00220 - VOC family protein, at 38,427 to 38,780
_RS00220
A4249_RS00225: A4249_RS00225 - TetR family transcriptional regulator, at 38,939 to 39,379
_RS00225
Position (kb) 36
37
38
39 Strain fitness (log2 ratio) -2
-1
0
1 at 35.989 kb on - strand, within A4249_RS00205 at 35.990 kb on + strand, within A4249_RS00205 at 35.991 kb on - strand, within A4249_RS00205 at 35.991 kb on - strand, within A4249_RS00205 at 36.105 kb on + strand at 36.106 kb on - strand at 36.131 kb on + strand at 36.131 kb on + strand at 36.131 kb on + strand at 36.131 kb on + strand at 36.131 kb on + strand at 36.131 kb on + strand at 36.131 kb on + strand at 36.131 kb on + strand at 36.131 kb on + strand at 36.131 kb on + strand at 36.131 kb on + strand at 36.131 kb on + strand at 36.131 kb on + strand at 36.131 kb on + strand at 36.131 kb on + strand at 36.131 kb on + strand at 36.131 kb on + strand at 36.131 kb on + strand at 36.131 kb on + strand at 36.132 kb on - strand at 36.132 kb on - strand at 36.132 kb on - strand at 36.132 kb on - strand at 36.132 kb on - strand at 36.132 kb on - strand at 36.132 kb on - strand at 36.132 kb on - strand at 36.132 kb on - strand at 36.132 kb on - strand at 36.132 kb on - strand at 36.132 kb on - strand at 36.132 kb on - strand at 36.132 kb on - strand at 36.132 kb on - strand at 36.132 kb on - strand at 36.132 kb on - strand at 36.132 kb on - strand at 36.133 kb on + strand at 36.133 kb on + strand at 36.133 kb on + strand at 36.133 kb on + strand at 36.133 kb on + strand at 36.133 kb on + strand at 36.134 kb on - strand at 36.134 kb on - strand at 36.134 kb on - strand at 36.134 kb on - strand at 36.134 kb on - strand at 36.134 kb on - strand at 36.134 kb on - strand at 36.134 kb on - strand at 36.134 kb on - strand at 36.231 kb on + strand, within A4249_RS00210 at 36.270 kb on + strand, within A4249_RS00210 at 36.271 kb on - strand, within A4249_RS00210 at 36.345 kb on + strand, within A4249_RS00210 at 36.345 kb on + strand, within A4249_RS00210 at 36.346 kb on - strand, within A4249_RS00210 at 36.346 kb on - strand, within A4249_RS00210 at 36.346 kb on - strand, within A4249_RS00210 at 36.346 kb on - strand, within A4249_RS00210 at 36.346 kb on - strand, within A4249_RS00210 at 36.346 kb on - strand, within A4249_RS00210 at 36.346 kb on - strand, within A4249_RS00210 at 36.475 kb on - strand, within A4249_RS00210 at 36.590 kb on + strand, within A4249_RS00210 at 36.591 kb on - strand, within A4249_RS00210 at 36.658 kb on - strand, within A4249_RS00210 at 36.668 kb on + strand at 37.128 kb on + strand, within A4249_RS00215 at 37.393 kb on + strand, within A4249_RS00215 at 37.447 kb on + strand, within A4249_RS00215 at 37.447 kb on + strand, within A4249_RS00215 at 37.448 kb on - strand, within A4249_RS00215 at 37.448 kb on - strand, within A4249_RS00215 at 37.448 kb on - strand, within A4249_RS00215 at 37.448 kb on - strand, within A4249_RS00215 at 37.579 kb on + strand, within A4249_RS00215 at 38.119 kb on + strand, within A4249_RS00215 at 38.119 kb on + strand, within A4249_RS00215 at 38.119 kb on + strand, within A4249_RS00215 at 38.120 kb on - strand, within A4249_RS00215 at 38.120 kb on - strand, within A4249_RS00215 at 38.120 kb on - strand, within A4249_RS00215 at 38.161 kb on + strand, within A4249_RS00215 at 38.330 kb on - strand at 38.365 kb on + strand at 38.365 kb on + strand at 38.366 kb on - strand at 38.366 kb on - strand at 38.366 kb on - strand at 38.366 kb on - strand at 38.419 kb on + strand at 38.419 kb on + strand at 38.419 kb on + strand at 38.420 kb on - strand at 38.420 kb on - strand at 38.428 kb on + strand at 38.428 kb on + strand at 38.488 kb on + strand, within A4249_RS00220 at 38.488 kb on + strand, within A4249_RS00220 at 38.488 kb on + strand, within A4249_RS00220 at 38.488 kb on + strand, within A4249_RS00220 at 38.488 kb on + strand, within A4249_RS00220 at 38.488 kb on + strand, within A4249_RS00220 at 38.489 kb on - strand, within A4249_RS00220 at 38.489 kb on - strand, within A4249_RS00220 at 38.489 kb on - strand, within A4249_RS00220 at 38.489 kb on - strand, within A4249_RS00220 at 38.572 kb on + strand, within A4249_RS00220 at 38.572 kb on + strand, within A4249_RS00220 at 38.572 kb on + strand, within A4249_RS00220 at 38.572 kb on + strand, within A4249_RS00220 at 38.572 kb on + strand, within A4249_RS00220 at 38.572 kb on + strand, within A4249_RS00220 at 38.573 kb on - strand, within A4249_RS00220 at 38.573 kb on - strand, within A4249_RS00220 at 38.573 kb on - strand, within A4249_RS00220 at 38.573 kb on - strand, within A4249_RS00220 at 38.573 kb on - strand, within A4249_RS00220 at 38.573 kb on - strand, within A4249_RS00220 at 38.573 kb on - strand, within A4249_RS00220 at 38.578 kb on + strand, within A4249_RS00220 at 38.578 kb on + strand, within A4249_RS00220 at 38.578 kb on + strand, within A4249_RS00220 at 38.578 kb on + strand, within A4249_RS00220 at 38.578 kb on + strand, within A4249_RS00220 at 38.578 kb on + strand, within A4249_RS00220 at 38.578 kb on + strand, within A4249_RS00220 at 38.578 kb on + strand, within A4249_RS00220 at 38.578 kb on + strand, within A4249_RS00220 at 38.579 kb on - strand, within A4249_RS00220 at 38.579 kb on - strand, within A4249_RS00220 at 38.639 kb on + strand, within A4249_RS00220 at 38.639 kb on + strand, within A4249_RS00220 at 38.639 kb on + strand, within A4249_RS00220 at 38.640 kb on - strand, within A4249_RS00220 at 38.640 kb on - strand, within A4249_RS00220 at 38.714 kb on - strand, within A4249_RS00220 at 38.748 kb on + strand at 38.847 kb on + strand at 38.848 kb on - strand at 38.848 kb on - strand at 38.848 kb on - strand at 38.927 kb on + strand at 38.927 kb on + strand at 38.927 kb on + strand at 38.927 kb on + strand at 38.927 kb on + strand at 38.928 kb on - strand at 38.928 kb on - strand at 38.928 kb on - strand at 38.928 kb on - strand at 38.928 kb on - strand at 38.928 kb on - strand at 38.928 kb on - strand at 38.929 kb on - strand at 39.035 kb on + strand, within A4249_RS00225 at 39.095 kb on + strand, within A4249_RS00225 at 39.095 kb on + strand, within A4249_RS00225 at 39.095 kb on + strand, within A4249_RS00225 at 39.095 kb on + strand, within A4249_RS00225 at 39.095 kb on + strand, within A4249_RS00225 at 39.095 kb on + strand, within A4249_RS00225 at 39.096 kb on - strand, within A4249_RS00225 at 39.096 kb on - strand, within A4249_RS00225 at 39.096 kb on - strand, within A4249_RS00225 at 39.096 kb on - strand, within A4249_RS00225 at 39.384 kb on + strand at 39.384 kb on + strand at 39.384 kb on + strand at 39.384 kb on + strand at 39.384 kb on + strand at 39.384 kb on + strand at 39.384 kb on + strand at 39.384 kb on + strand at 39.384 kb on + strand at 39.384 kb on + strand at 39.384 kb on + strand at 39.385 kb on - strand at 39.385 kb on - strand at 39.385 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C) remove 35,989 - A4249_RS00205 0.80 -1.5 35,990 + A4249_RS00205 0.80 -0.3 35,991 - A4249_RS00205 0.80 +0.1 35,991 - A4249_RS00205 0.80 -1.9 36,105 + -0.1 36,106 - +0.1 36,131 + +0.0 36,131 + -0.1 36,131 + +0.3 36,131 + +0.2 36,131 + +0.2 36,131 + +0.8 36,131 + +0.1 36,131 + +1.2 36,131 + -0.6 36,131 + +0.1 36,131 + +0.3 36,131 + -0.0 36,131 + -0.2 36,131 + +0.6 36,131 + -0.1 36,131 + -0.0 36,131 + +0.1 36,131 + -0.6 36,131 + +0.2 36,132 - -0.2 36,132 - -0.2 36,132 - +0.2 36,132 - +0.0 36,132 - -0.5 36,132 - -0.1 36,132 - -0.3 36,132 - +1.3 36,132 - -0.2 36,132 - -0.7 36,132 - +0.2 36,132 - -0.7 36,132 - -0.2 36,132 - +0.8 36,132 - -0.3 36,132 - -0.0 36,132 - +0.4 36,132 - +0.7 36,133 + -0.2 36,133 + +0.5 36,133 + +0.9 36,133 + -0.4 36,133 + -0.3 36,133 + +0.0 36,134 - +0.1 36,134 - +0.2 36,134 - -0.2 36,134 - +1.5 36,134 - -0.1 36,134 - -0.2 36,134 - +0.7 36,134 - -0.7 36,134 - +0.7 36,231 + A4249_RS00210 0.15 +0.1 36,270 + A4249_RS00210 0.22 +0.7 36,271 - A4249_RS00210 0.22 +0.4 36,345 + A4249_RS00210 0.35 +0.5 36,345 + A4249_RS00210 0.35 +0.0 36,346 - A4249_RS00210 0.35 -0.2 36,346 - A4249_RS00210 0.35 -0.5 36,346 - A4249_RS00210 0.35 +0.5 36,346 - A4249_RS00210 0.35 +0.2 36,346 - A4249_RS00210 0.35 +0.1 36,346 - A4249_RS00210 0.35 +0.5 36,346 - A4249_RS00210 0.35 +0.3 36,475 - A4249_RS00210 0.57 -0.1 36,590 + A4249_RS00210 0.77 +0.2 36,591 - A4249_RS00210 0.77 +0.2 36,658 - A4249_RS00210 0.89 +0.3 36,668 + +1.0 37,128 + A4249_RS00215 0.22 -0.1 37,393 + A4249_RS00215 0.38 -1.2 37,447 + A4249_RS00215 0.42 -1.5 37,447 + A4249_RS00215 0.42 +0.1 37,448 - A4249_RS00215 0.42 -0.9 37,448 - A4249_RS00215 0.42 +0.4 37,448 - A4249_RS00215 0.42 -0.3 37,448 - A4249_RS00215 0.42 -0.3 37,579 + A4249_RS00215 0.49 +0.5 38,119 + A4249_RS00215 0.82 -0.7 38,119 + A4249_RS00215 0.82 -1.1 38,119 + A4249_RS00215 0.82 +0.9 38,120 - A4249_RS00215 0.82 -0.2 38,120 - A4249_RS00215 0.82 -1.1 38,120 - A4249_RS00215 0.82 -2.6 38,161 + A4249_RS00215 0.84 -0.1 38,330 - -0.2 38,365 + -0.2 38,365 + -0.2 38,366 - -1.5 38,366 - +0.3 38,366 - -0.2 38,366 - -1.1 38,419 + +0.6 38,419 + -0.2 38,419 + -0.8 38,420 - +0.1 38,420 - -0.2 38,428 + +0.5 38,428 + +0.7 38,488 + A4249_RS00220 0.17 +0.3 38,488 + A4249_RS00220 0.17 +0.8 38,488 + A4249_RS00220 0.17 +1.0 38,488 + A4249_RS00220 0.17 +0.0 38,488 + A4249_RS00220 0.17 -0.4 38,488 + A4249_RS00220 0.17 +0.1 38,489 - A4249_RS00220 0.18 -0.6 38,489 - A4249_RS00220 0.18 +0.3 38,489 - A4249_RS00220 0.18 -0.1 38,489 - A4249_RS00220 0.18 +0.1 38,572 + A4249_RS00220 0.41 +0.4 38,572 + A4249_RS00220 0.41 -0.0 38,572 + A4249_RS00220 0.41 +0.2 38,572 + A4249_RS00220 0.41 -1.2 38,572 + A4249_RS00220 0.41 +0.4 38,572 + A4249_RS00220 0.41 +0.4 38,573 - A4249_RS00220 0.41 -0.5 38,573 - A4249_RS00220 0.41 -0.6 38,573 - A4249_RS00220 0.41 -0.5 38,573 - A4249_RS00220 0.41 +0.3 38,573 - A4249_RS00220 0.41 -0.4 38,573 - A4249_RS00220 0.41 -0.2 38,573 - A4249_RS00220 0.41 -0.9 38,578 + A4249_RS00220 0.43 -0.5 38,578 + A4249_RS00220 0.43 -0.6 38,578 + A4249_RS00220 0.43 -1.0 38,578 + A4249_RS00220 0.43 +0.6 38,578 + A4249_RS00220 0.43 +0.3 38,578 + A4249_RS00220 0.43 +0.8 38,578 + A4249_RS00220 0.43 +0.8 38,578 + A4249_RS00220 0.43 +0.5 38,578 + A4249_RS00220 0.43 -0.5 38,579 - A4249_RS00220 0.43 -0.6 38,579 - A4249_RS00220 0.43 -0.1 38,639 + A4249_RS00220 0.60 +0.7 38,639 + A4249_RS00220 0.60 +0.7 38,639 + A4249_RS00220 0.60 -0.1 38,640 - A4249_RS00220 0.60 +1.0 38,640 - A4249_RS00220 0.60 -1.0 38,714 - A4249_RS00220 0.81 -1.3 38,748 + +0.2 38,847 + -0.2 38,848 - -0.1 38,848 - -0.1 38,848 - -0.2 38,927 + +0.5 38,927 + +0.0 38,927 + +0.6 38,927 + +0.6 38,927 + +0.1 38,928 - +0.7 38,928 - +0.4 38,928 - -0.1 38,928 - -1.5 38,928 - +1.2 38,928 - +0.5 38,928 - +0.3 38,929 - +0.3 39,035 + A4249_RS00225 0.22 -0.3 39,095 + A4249_RS00225 0.35 -0.1 39,095 + A4249_RS00225 0.35 -0.1 39,095 + A4249_RS00225 0.35 -0.4 39,095 + A4249_RS00225 0.35 +0.0 39,095 + A4249_RS00225 0.35 -0.3 39,095 + A4249_RS00225 0.35 -0.2 39,096 - A4249_RS00225 0.36 +0.3 39,096 - A4249_RS00225 0.36 +0.6 39,096 - A4249_RS00225 0.36 +0.2 39,096 - A4249_RS00225 0.36 +0.8 39,384 + +0.4 39,384 + +0.2 39,384 + -1.3 39,384 + +0.3 39,384 + -0.0 39,384 + +0.1 39,384 + +0.3 39,384 + +0.7 39,384 + -0.2 39,384 + -0.6 39,384 + +0.5 39,385 - +0.5 39,385 - +0.7 39,385 - -0.0
Or see this region's nucleotide sequence