Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02663

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02661 and MPMX26_02662 are separated by 74 nucleotidesMPMX26_02662 and MPMX26_02663 are separated by 37 nucleotidesMPMX26_02663 and MPMX26_02664 are separated by 163 nucleotides MPMX26_02661: MPMX26_02661 - hypothetical protein, at 2,757,882 to 2,758,484 _02661 MPMX26_02662: MPMX26_02662 - hypothetical protein, at 2,758,559 to 2,759,086 _02662 MPMX26_02663: MPMX26_02663 - hypothetical protein, at 2,759,124 to 2,759,387 _02663 MPMX26_02664: MPMX26_02664 - Malate dehydrogenase, at 2,759,551 to 2,760,537 _02664 Position (kb) 2759 2760Strain fitness (log2 ratio) -1 0 1at 2758.145 kb on + strand, within MPMX26_02661at 2758.167 kb on + strand, within MPMX26_02661at 2758.223 kb on + strand, within MPMX26_02661at 2758.223 kb on + strand, within MPMX26_02661at 2758.223 kb on + strand, within MPMX26_02661at 2758.223 kb on + strand, within MPMX26_02661at 2758.223 kb on + strand, within MPMX26_02661at 2758.281 kb on + strand, within MPMX26_02661at 2758.416 kb on + strand, within MPMX26_02661at 2758.418 kb on + strand, within MPMX26_02661at 2758.418 kb on + strand, within MPMX26_02661at 2758.442 kb on + strandat 2758.442 kb on + strandat 2758.442 kb on + strandat 2758.442 kb on + strandat 2758.442 kb on + strandat 2758.442 kb on + strandat 2758.455 kb on + strandat 2758.457 kb on + strandat 2758.460 kb on + strandat 2758.465 kb on + strandat 2758.467 kb on + strandat 2758.473 kb on + strandat 2758.480 kb on + strandat 2758.485 kb on + strandat 2758.486 kb on + strandat 2758.554 kb on + strandat 2758.607 kb on + strandat 2758.629 kb on + strand, within MPMX26_02662at 2758.629 kb on + strand, within MPMX26_02662at 2758.629 kb on + strand, within MPMX26_02662at 2758.647 kb on + strand, within MPMX26_02662at 2758.657 kb on + strand, within MPMX26_02662at 2758.662 kb on + strand, within MPMX26_02662at 2758.662 kb on + strand, within MPMX26_02662at 2758.662 kb on + strand, within MPMX26_02662at 2758.773 kb on + strand, within MPMX26_02662at 2758.773 kb on + strand, within MPMX26_02662at 2758.773 kb on + strand, within MPMX26_02662at 2758.774 kb on + strand, within MPMX26_02662at 2758.779 kb on + strand, within MPMX26_02662at 2758.779 kb on + strand, within MPMX26_02662at 2758.779 kb on + strand, within MPMX26_02662at 2758.779 kb on + strand, within MPMX26_02662at 2758.779 kb on + strand, within MPMX26_02662at 2758.779 kb on + strand, within MPMX26_02662at 2758.781 kb on + strand, within MPMX26_02662at 2758.801 kb on + strand, within MPMX26_02662at 2758.859 kb on + strand, within MPMX26_02662at 2758.923 kb on + strand, within MPMX26_02662at 2758.923 kb on + strand, within MPMX26_02662at 2758.923 kb on + strand, within MPMX26_02662at 2758.955 kb on + strand, within MPMX26_02662at 2758.983 kb on + strand, within MPMX26_02662at 2759.047 kb on + strandat 2759.099 kb on + strandat 2759.099 kb on + strandat 2759.160 kb on - strand, within MPMX26_02663at 2759.175 kb on - strand, within MPMX26_02663at 2759.238 kb on - strand, within MPMX26_02663at 2759.274 kb on - strand, within MPMX26_02663at 2759.322 kb on - strand, within MPMX26_02663at 2759.333 kb on - strand, within MPMX26_02663at 2759.375 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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2,758,145 + MPMX26_02661 0.44 +0.5
2,758,167 + MPMX26_02661 0.47 +0.6
2,758,223 + MPMX26_02661 0.57 -0.3
2,758,223 + MPMX26_02661 0.57 -1.3
2,758,223 + MPMX26_02661 0.57 +0.7
2,758,223 + MPMX26_02661 0.57 -0.3
2,758,223 + MPMX26_02661 0.57 +0.5
2,758,281 + MPMX26_02661 0.66 -0.2
2,758,416 + MPMX26_02661 0.89 -0.3
2,758,418 + MPMX26_02661 0.89 +0.0
2,758,418 + MPMX26_02661 0.89 -0.2
2,758,442 + -0.6
2,758,442 + -0.6
2,758,442 + -0.3
2,758,442 + -0.6
2,758,442 + -0.7
2,758,442 + -0.3
2,758,455 + -0.3
2,758,457 + +0.5
2,758,460 + +0.3
2,758,465 + -1.1
2,758,467 + +1.5
2,758,473 + -0.9
2,758,480 + +1.7
2,758,485 + -1.0
2,758,486 + -0.2
2,758,554 + -0.1
2,758,607 + +1.0
2,758,629 + MPMX26_02662 0.13 +0.7
2,758,629 + MPMX26_02662 0.13 +0.6
2,758,629 + MPMX26_02662 0.13 +0.1
2,758,647 + MPMX26_02662 0.17 -0.3
2,758,657 + MPMX26_02662 0.19 +0.2
2,758,662 + MPMX26_02662 0.20 +0.8
2,758,662 + MPMX26_02662 0.20 -0.5
2,758,662 + MPMX26_02662 0.20 +0.4
2,758,773 + MPMX26_02662 0.41 +1.1
2,758,773 + MPMX26_02662 0.41 +0.3
2,758,773 + MPMX26_02662 0.41 +1.0
2,758,774 + MPMX26_02662 0.41 -1.1
2,758,779 + MPMX26_02662 0.42 +0.5
2,758,779 + MPMX26_02662 0.42 +0.5
2,758,779 + MPMX26_02662 0.42 -0.3
2,758,779 + MPMX26_02662 0.42 +0.3
2,758,779 + MPMX26_02662 0.42 +0.4
2,758,779 + MPMX26_02662 0.42 -0.2
2,758,781 + MPMX26_02662 0.42 +0.4
2,758,801 + MPMX26_02662 0.46 +0.1
2,758,859 + MPMX26_02662 0.57 +0.5
2,758,923 + MPMX26_02662 0.69 -0.1
2,758,923 + MPMX26_02662 0.69 -0.1
2,758,923 + MPMX26_02662 0.69 +0.1
2,758,955 + MPMX26_02662 0.75 -0.2
2,758,983 + MPMX26_02662 0.80 -0.2
2,759,047 + -0.3
2,759,099 + +0.2
2,759,099 + -0.5
2,759,160 - MPMX26_02663 0.14 +0.0
2,759,175 - MPMX26_02663 0.19 -0.0
2,759,238 - MPMX26_02663 0.43 +0.1
2,759,274 - MPMX26_02663 0.57 +0.9
2,759,322 - MPMX26_02663 0.75 +0.5
2,759,333 - MPMX26_02663 0.79 +1.7
2,759,375 - +0.7

Or see this region's nucleotide sequence