Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02519

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02518 and MPMX26_02519 are separated by 29 nucleotidesMPMX26_02519 and MPMX26_02520 are separated by 33 nucleotidesMPMX26_02520 and MPMX26_02521 are separated by 9 nucleotides MPMX26_02518: MPMX26_02518 - hypothetical protein, at 2,604,455 to 2,605,516 _02518 MPMX26_02519: MPMX26_02519 - hypothetical protein, at 2,605,546 to 2,607,822 _02519 MPMX26_02520: MPMX26_02520 - hypothetical protein, at 2,607,856 to 2,608,512 _02520 MPMX26_02521: MPMX26_02521 - hypothetical protein, at 2,608,522 to 2,609,985 _02521 Position (kb) 2605 2606 2607 2608Strain fitness (log2 ratio) -2 -1 0 1at 2604.551 kb on - strandat 2604.582 kb on - strand, within MPMX26_02518at 2604.582 kb on - strand, within MPMX26_02518at 2604.623 kb on - strand, within MPMX26_02518at 2604.640 kb on - strand, within MPMX26_02518at 2605.260 kb on + strand, within MPMX26_02518at 2606.320 kb on - strand, within MPMX26_02519at 2607.952 kb on + strand, within MPMX26_02520

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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2,604,551 - +0.1
2,604,582 - MPMX26_02518 0.12 +0.9
2,604,582 - MPMX26_02518 0.12 +0.8
2,604,623 - MPMX26_02518 0.16 -1.8
2,604,640 - MPMX26_02518 0.17 +0.3
2,605,260 + MPMX26_02518 0.76 -0.4
2,606,320 - MPMX26_02519 0.34 -1.5
2,607,952 + MPMX26_02520 0.15 -0.1

Or see this region's nucleotide sequence