Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02478

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02477 and MPMX26_02478 are separated by 604 nucleotidesMPMX26_02478 and MPMX26_02479 are separated by 39 nucleotides MPMX26_02477: MPMX26_02477 - Dual-specificity RNA pseudouridine synthase RluA, at 2,561,561 to 2,562,226 _02477 MPMX26_02478: MPMX26_02478 - hypothetical protein, at 2,562,831 to 2,563,538 _02478 MPMX26_02479: MPMX26_02479 - hypothetical protein, at 2,563,578 to 2,564,261 _02479 Position (kb) 2562 2563 2564Strain fitness (log2 ratio) -1 0 1at 2561.895 kb on - strand, within MPMX26_02477at 2561.895 kb on - strand, within MPMX26_02477at 2562.013 kb on - strand, within MPMX26_02477at 2562.097 kb on - strand, within MPMX26_02477at 2562.097 kb on - strand, within MPMX26_02477at 2562.097 kb on - strand, within MPMX26_02477at 2562.097 kb on - strand, within MPMX26_02477at 2562.097 kb on - strand, within MPMX26_02477at 2562.097 kb on - strand, within MPMX26_02477at 2562.097 kb on - strand, within MPMX26_02477at 2562.143 kb on - strand, within MPMX26_02477at 2562.204 kb on - strandat 2563.280 kb on - strand, within MPMX26_02478at 2563.355 kb on - strand, within MPMX26_02478at 2563.355 kb on - strand, within MPMX26_02478at 2564.115 kb on - strand, within MPMX26_02479at 2564.417 kb on - strandat 2564.428 kb on - strandat 2564.471 kb on - strandat 2564.471 kb on - strandat 2564.500 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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2,561,895 - MPMX26_02477 0.50 +1.2
2,561,895 - MPMX26_02477 0.50 +0.5
2,562,013 - MPMX26_02477 0.68 -0.6
2,562,097 - MPMX26_02477 0.80 -0.2
2,562,097 - MPMX26_02477 0.80 -0.6
2,562,097 - MPMX26_02477 0.80 -0.3
2,562,097 - MPMX26_02477 0.80 +0.6
2,562,097 - MPMX26_02477 0.80 +0.2
2,562,097 - MPMX26_02477 0.80 -0.1
2,562,097 - MPMX26_02477 0.80 +0.8
2,562,143 - MPMX26_02477 0.87 +1.5
2,562,204 - +0.2
2,563,280 - MPMX26_02478 0.63 +0.2
2,563,355 - MPMX26_02478 0.74 -1.6
2,563,355 - MPMX26_02478 0.74 -0.5
2,564,115 - MPMX26_02479 0.79 +0.8
2,564,417 - -0.4
2,564,428 - -0.1
2,564,471 - +0.4
2,564,471 - -0.5
2,564,500 - -0.2

Or see this region's nucleotide sequence