Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02290

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02288 and MPMX26_02289 overlap by 4 nucleotidesMPMX26_02289 and MPMX26_02290 are separated by 327 nucleotidesMPMX26_02290 and MPMX26_02291 are separated by 264 nucleotides MPMX26_02288: MPMX26_02288 - hypothetical protein, at 2,358,927 to 2,359,487 _02288 MPMX26_02289: MPMX26_02289 - hypothetical protein, at 2,359,484 to 2,359,768 _02289 MPMX26_02290: MPMX26_02290 - Leucine-responsive regulatory protein, at 2,360,096 to 2,360,566 _02290 MPMX26_02291: MPMX26_02291 - hypothetical protein, at 2,360,831 to 2,361,346 _02291 Position (kb) 2360 2361Strain fitness (log2 ratio) -1 0 1at 2359.415 kb on + strand, within MPMX26_02288at 2359.415 kb on + strand, within MPMX26_02288at 2359.415 kb on + strand, within MPMX26_02288at 2359.415 kb on + strand, within MPMX26_02288at 2359.451 kb on + strandat 2359.451 kb on + strandat 2359.767 kb on + strandat 2359.772 kb on + strandat 2359.837 kb on + strandat 2359.846 kb on + strandat 2359.858 kb on + strandat 2359.895 kb on + strandat 2359.895 kb on + strandat 2359.897 kb on + strandat 2359.899 kb on + strandat 2359.902 kb on + strandat 2359.902 kb on + strandat 2359.922 kb on + strandat 2359.950 kb on + strandat 2359.950 kb on + strandat 2359.950 kb on + strandat 2359.950 kb on + strandat 2359.950 kb on + strandat 2359.950 kb on + strandat 2359.950 kb on + strandat 2359.950 kb on + strandat 2359.950 kb on + strandat 2359.950 kb on + strandat 2359.950 kb on + strandat 2359.955 kb on + strandat 2359.955 kb on + strandat 2359.968 kb on - strandat 2359.982 kb on + strandat 2359.998 kb on + strandat 2360.006 kb on + strandat 2360.013 kb on + strandat 2360.019 kb on + strandat 2360.040 kb on + strandat 2360.279 kb on - strand, within MPMX26_02290at 2360.416 kb on - strand, within MPMX26_02290at 2361.493 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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2,359,415 + MPMX26_02288 0.87 +0.4
2,359,415 + MPMX26_02288 0.87 +0.5
2,359,415 + MPMX26_02288 0.87 +0.0
2,359,415 + MPMX26_02288 0.87 -0.1
2,359,451 + -0.9
2,359,451 + +0.6
2,359,767 + -1.3
2,359,772 + +0.2
2,359,837 + -0.3
2,359,846 + +0.1
2,359,858 + -0.1
2,359,895 + -0.3
2,359,895 + -0.1
2,359,897 + -0.3
2,359,899 + +0.1
2,359,902 + -0.7
2,359,902 + -0.3
2,359,922 + -0.4
2,359,950 + -0.4
2,359,950 + +0.1
2,359,950 + -0.1
2,359,950 + +0.4
2,359,950 + -0.6
2,359,950 + -1.7
2,359,950 + -0.0
2,359,950 + -0.2
2,359,950 + -0.2
2,359,950 + -0.1
2,359,950 + -0.3
2,359,955 + -0.6
2,359,955 + -0.6
2,359,968 - -1.4
2,359,982 + -0.1
2,359,998 + -0.8
2,360,006 + -0.1
2,360,013 + -0.0
2,360,019 + +0.0
2,360,040 + +0.1
2,360,279 - MPMX26_02290 0.39 -0.5
2,360,416 - MPMX26_02290 0.68 -1.7
2,361,493 - +0.2

Or see this region's nucleotide sequence