Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02238

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02237 and MPMX26_02238 overlap by 4 nucleotidesMPMX26_02238 and MPMX26_02239 are separated by 377 nucleotides MPMX26_02237: MPMX26_02237 - Elongation factor P--(R)-beta-lysine ligase, at 2,297,126 to 2,298,100 _02237 MPMX26_02238: MPMX26_02238 - Erythronate-4-phosphate dehydrogenase, at 2,298,097 to 2,299,167 _02238 MPMX26_02239: MPMX26_02239 - Gamma-glutamylputrescine synthetase PuuA, at 2,299,545 to 2,300,972 _02239 Position (kb) 2298 2299 2300Strain fitness (log2 ratio) -2 -1 0 1at 2297.135 kb on - strandat 2298.120 kb on - strandat 2298.388 kb on - strand, within MPMX26_02238at 2298.388 kb on - strand, within MPMX26_02238at 2298.388 kb on - strand, within MPMX26_02238at 2298.427 kb on - strand, within MPMX26_02238at 2298.465 kb on - strand, within MPMX26_02238at 2298.513 kb on - strand, within MPMX26_02238at 2298.529 kb on - strand, within MPMX26_02238at 2298.631 kb on - strand, within MPMX26_02238at 2298.715 kb on - strand, within MPMX26_02238at 2298.759 kb on - strand, within MPMX26_02238at 2298.775 kb on - strand, within MPMX26_02238at 2298.796 kb on - strand, within MPMX26_02238at 2298.970 kb on - strand, within MPMX26_02238

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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2,297,135 - -1.8
2,298,120 - -2.1
2,298,388 - MPMX26_02238 0.27 +0.2
2,298,388 - MPMX26_02238 0.27 -1.0
2,298,388 - MPMX26_02238 0.27 -0.6
2,298,427 - MPMX26_02238 0.31 +0.8
2,298,465 - MPMX26_02238 0.34 -1.4
2,298,513 - MPMX26_02238 0.39 -0.2
2,298,529 - MPMX26_02238 0.40 -1.0
2,298,631 - MPMX26_02238 0.50 -0.6
2,298,715 - MPMX26_02238 0.58 -0.6
2,298,759 - MPMX26_02238 0.62 -0.2
2,298,775 - MPMX26_02238 0.63 -0.4
2,298,796 - MPMX26_02238 0.65 +0.2
2,298,970 - MPMX26_02238 0.82 -0.2

Or see this region's nucleotide sequence