Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01344

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01342 and MPMX26_01343 are separated by 234 nucleotidesMPMX26_01343 and MPMX26_01344 are separated by 14 nucleotidesMPMX26_01344 and MPMX26_01345 are separated by 98 nucleotidesMPMX26_01345 and MPMX26_01346 are separated by 86 nucleotidesMPMX26_01346 and MPMX26_01347 are separated by 249 nucleotidesMPMX26_01347 and MPMX26_01348 are separated by 73 nucleotides MPMX26_01342: MPMX26_01342 - hypothetical protein, at 1,416,468 to 1,416,701 _01342 MPMX26_01343: MPMX26_01343 - hypothetical protein, at 1,416,936 to 1,417,379 _01343 MPMX26_01344: MPMX26_01344 - hypothetical protein, at 1,417,394 to 1,417,945 _01344 MPMX26_01345: MPMX26_01345 - hypothetical protein, at 1,418,044 to 1,418,238 _01345 MPMX26_01346: MPMX26_01346 - tRNA-Met, at 1,418,325 to 1,418,401 _01346 MPMX26_01347: MPMX26_01347 - Cold shock protein CspV, at 1,418,651 to 1,418,860 _01347 MPMX26_01348: MPMX26_01348 - hypothetical protein, at 1,418,934 to 1,419,614 _01348 Position (kb) 1417 1418Strain fitness (log2 ratio) -1 0 1at 1416.540 kb on + strand, within MPMX26_01342at 1416.541 kb on + strand, within MPMX26_01342at 1416.617 kb on + strand, within MPMX26_01342at 1416.706 kb on + strandat 1417.661 kb on + strand, within MPMX26_01344at 1417.696 kb on + strand, within MPMX26_01344at 1418.091 kb on + strand, within MPMX26_01345at 1418.097 kb on + strand, within MPMX26_01345at 1418.118 kb on + strand, within MPMX26_01345at 1418.166 kb on + strand, within MPMX26_01345at 1418.166 kb on + strand, within MPMX26_01345at 1418.166 kb on + strand, within MPMX26_01345at 1418.166 kb on + strand, within MPMX26_01345at 1418.166 kb on + strand, within MPMX26_01345at 1418.171 kb on + strand, within MPMX26_01345at 1418.214 kb on + strand, within MPMX26_01345at 1418.378 kb on + strand, within MPMX26_01346at 1418.417 kb on + strandat 1418.557 kb on + strandat 1418.604 kb on + strandat 1418.653 kb on + strandat 1418.682 kb on + strand, within MPMX26_01347at 1418.727 kb on + strand, within MPMX26_01347at 1418.746 kb on + strand, within MPMX26_01347at 1418.770 kb on + strand, within MPMX26_01347at 1418.798 kb on + strand, within MPMX26_01347at 1418.798 kb on + strand, within MPMX26_01347at 1418.798 kb on + strand, within MPMX26_01347at 1418.857 kb on + strandat 1418.871 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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1,416,540 + MPMX26_01342 0.31 -0.3
1,416,541 + MPMX26_01342 0.31 -0.5
1,416,617 + MPMX26_01342 0.64 +0.1
1,416,706 + -1.1
1,417,661 + MPMX26_01344 0.48 -1.0
1,417,696 + MPMX26_01344 0.55 -0.3
1,418,091 + MPMX26_01345 0.24 -0.3
1,418,097 + MPMX26_01345 0.27 +0.3
1,418,118 + MPMX26_01345 0.38 -0.2
1,418,166 + MPMX26_01345 0.63 +0.7
1,418,166 + MPMX26_01345 0.63 +0.3
1,418,166 + MPMX26_01345 0.63 -0.3
1,418,166 + MPMX26_01345 0.63 +0.6
1,418,166 + MPMX26_01345 0.63 +1.7
1,418,171 + MPMX26_01345 0.65 +0.6
1,418,214 + MPMX26_01345 0.87 +0.5
1,418,378 + MPMX26_01346 0.69 +0.3
1,418,417 + +0.5
1,418,557 + +0.8
1,418,604 + -0.5
1,418,653 + +0.4
1,418,682 + MPMX26_01347 0.15 +0.2
1,418,727 + MPMX26_01347 0.36 +0.2
1,418,746 + MPMX26_01347 0.45 -0.8
1,418,770 + MPMX26_01347 0.57 +0.7
1,418,798 + MPMX26_01347 0.70 -0.2
1,418,798 + MPMX26_01347 0.70 +0.4
1,418,798 + MPMX26_01347 0.70 +0.6
1,418,857 + -0.2
1,418,871 + +0.9

Or see this region's nucleotide sequence