Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01291

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01290 and MPMX26_01291 are separated by 62 nucleotidesMPMX26_01291 and MPMX26_01292 are separated by 199 nucleotides MPMX26_01290: MPMX26_01290 - 2-methylcitrate synthase, at 1,365,432 to 1,366,574 _01290 MPMX26_01291: MPMX26_01291 - hypothetical protein, at 1,366,637 to 1,367,272 _01291 MPMX26_01292: MPMX26_01292 - DNA-binding transcriptional regulator NtrC, at 1,367,472 to 1,368,947 _01292 Position (kb) 1366 1367 1368Strain fitness (log2 ratio) -1 0 1at 1366.784 kb on - strand, within MPMX26_01291at 1367.520 kb on - strandat 1367.520 kb on - strandat 1367.520 kb on - strandat 1367.567 kb on - strandat 1367.588 kb on - strandat 1367.639 kb on - strand, within MPMX26_01292at 1367.705 kb on - strand, within MPMX26_01292at 1367.711 kb on - strand, within MPMX26_01292at 1367.768 kb on - strand, within MPMX26_01292at 1368.059 kb on - strand, within MPMX26_01292at 1368.156 kb on - strand, within MPMX26_01292at 1368.183 kb on - strand, within MPMX26_01292at 1368.183 kb on - strand, within MPMX26_01292at 1368.255 kb on - strand, within MPMX26_01292at 1368.255 kb on - strand, within MPMX26_01292at 1368.255 kb on - strand, within MPMX26_01292at 1368.255 kb on - strand, within MPMX26_01292

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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1,366,784 - MPMX26_01291 0.23 -1.1
1,367,520 - +0.3
1,367,520 - +0.5
1,367,520 - +0.4
1,367,567 - -0.3
1,367,588 - -0.7
1,367,639 - MPMX26_01292 0.11 +0.3
1,367,705 - MPMX26_01292 0.16 -1.0
1,367,711 - MPMX26_01292 0.16 +0.2
1,367,768 - MPMX26_01292 0.20 -0.2
1,368,059 - MPMX26_01292 0.40 -0.2
1,368,156 - MPMX26_01292 0.46 +1.2
1,368,183 - MPMX26_01292 0.48 -0.2
1,368,183 - MPMX26_01292 0.48 -0.1
1,368,255 - MPMX26_01292 0.53 -0.1
1,368,255 - MPMX26_01292 0.53 -0.6
1,368,255 - MPMX26_01292 0.53 +0.3
1,368,255 - MPMX26_01292 0.53 +0.6

Or see this region's nucleotide sequence