Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00124

Experiment: UV exposure at 150J/m2 for 20 seconds

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00122 and MPMX26_00123 are separated by 193 nucleotidesMPMX26_00123 and MPMX26_00124 are separated by 357 nucleotidesMPMX26_00124 and MPMX26_00125 are separated by 429 nucleotides MPMX26_00122: MPMX26_00122 - 23S ribosomal RNA, at 129,068 to 131,954 _00122 MPMX26_00123: MPMX26_00123 - 5S ribosomal RNA, at 132,148 to 132,258 _00123 MPMX26_00124: MPMX26_00124 - Gentisate transporter, at 132,616 to 133,980 _00124 MPMX26_00125: MPMX26_00125 - hypothetical protein, at 134,410 to 135,660 _00125 Position (kb) 132 133 134Strain fitness (log2 ratio) -1 0 1at 132.282 kb on + strandat 133.465 kb on + strand, within MPMX26_00124at 133.624 kb on + strand, within MPMX26_00124at 133.717 kb on + strand, within MPMX26_00124at 133.722 kb on + strand, within MPMX26_00124at 133.929 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction UV exposure at 150J/m2 for 20 seconds
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132,282 + +0.3
133,465 + MPMX26_00124 0.62 +0.1
133,624 + MPMX26_00124 0.74 -0.2
133,717 + MPMX26_00124 0.81 -0.2
133,722 + MPMX26_00124 0.81 -1.2
133,929 + +0.2

Or see this region's nucleotide sequence