Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06926 and MPMX19_06927 are separated by 26 nucleotides MPMX19_06927 and MPMX19_06928 are separated by 42 nucleotides MPMX19_06928 and MPMX19_06929 are separated by 308 nucleotides MPMX19_06929 and MPMX19_06930 are separated by 316 nucleotides
MPMX19_06926: MPMX19_06926 - hypothetical protein, at 201,714 to 202,046
_06926
MPMX19_06927: MPMX19_06927 - FMN-dependent NADH-azoreductase 1, at 202,073 to 202,705
_06927
MPMX19_06928: MPMX19_06928 - hypothetical protein, at 202,748 to 203,020
_06928
MPMX19_06929: MPMX19_06929 - hypothetical protein, at 203,329 to 203,646
_06929
MPMX19_06930: MPMX19_06930 - Sensor kinase CckA, at 203,963 to 204,331
_06930
Position (kb) 202
203
204 Strain fitness (log2 ratio) -2
-1
0
1
2 at 201.899 kb on + strand, within MPMX19_06926 at 201.899 kb on + strand, within MPMX19_06926 at 201.900 kb on - strand, within MPMX19_06926 at 201.900 kb on - strand, within MPMX19_06926 at 201.958 kb on + strand, within MPMX19_06926 at 201.958 kb on + strand, within MPMX19_06926 at 201.958 kb on + strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 201.959 kb on - strand, within MPMX19_06926 at 202.021 kb on + strand at 202.021 kb on + strand at 202.021 kb on + strand at 202.022 kb on - strand at 202.022 kb on - strand at 202.075 kb on - strand at 202.075 kb on - strand at 202.075 kb on - strand at 202.218 kb on + strand, within MPMX19_06927 at 202.230 kb on + strand, within MPMX19_06927 at 202.230 kb on + strand, within MPMX19_06927 at 202.230 kb on + strand, within MPMX19_06927 at 202.231 kb on - strand, within MPMX19_06927 at 202.231 kb on - strand, within MPMX19_06927 at 202.231 kb on - strand, within MPMX19_06927 at 202.272 kb on + strand, within MPMX19_06927 at 202.272 kb on + strand, within MPMX19_06927 at 202.273 kb on - strand, within MPMX19_06927 at 202.273 kb on - strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.344 kb on + strand, within MPMX19_06927 at 202.345 kb on - strand, within MPMX19_06927 at 202.345 kb on - strand, within MPMX19_06927 at 202.404 kb on - strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.416 kb on + strand, within MPMX19_06927 at 202.417 kb on - strand, within MPMX19_06927 at 202.417 kb on - strand, within MPMX19_06927 at 202.417 kb on - strand, within MPMX19_06927 at 202.855 kb on + strand, within MPMX19_06928 at 202.856 kb on - strand, within MPMX19_06928 at 202.918 kb on - strand, within MPMX19_06928 at 202.918 kb on - strand, within MPMX19_06928 at 202.918 kb on - strand, within MPMX19_06928 at 203.221 kb on + strand at 203.221 kb on + strand at 203.378 kb on + strand, within MPMX19_06929 at 203.435 kb on + strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.436 kb on - strand, within MPMX19_06929 at 203.775 kb on + strand at 203.776 kb on - strand at 203.810 kb on + strand at 203.811 kb on - strand at 203.826 kb on + strand at 203.843 kb on - strand at 203.862 kb on + strand at 203.863 kb on - strand at 203.863 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 201,899 + MPMX19_06926 0.56 +0.1 201,899 + MPMX19_06926 0.56 -0.3 201,900 - MPMX19_06926 0.56 -0.3 201,900 - MPMX19_06926 0.56 -0.1 201,958 + MPMX19_06926 0.73 -0.9 201,958 + MPMX19_06926 0.73 -0.6 201,958 + MPMX19_06926 0.73 +2.3 201,959 - MPMX19_06926 0.74 +0.5 201,959 - MPMX19_06926 0.74 -2.0 201,959 - MPMX19_06926 0.74 -0.1 201,959 - MPMX19_06926 0.74 +0.2 201,959 - MPMX19_06926 0.74 -0.5 202,021 + +0.2 202,021 + -0.6 202,021 + +0.1 202,022 - -0.8 202,022 - -0.3 202,075 - +0.1 202,075 - +0.7 202,075 - -0.6 202,218 + MPMX19_06927 0.23 -0.6 202,230 + MPMX19_06927 0.25 -0.0 202,230 + MPMX19_06927 0.25 -1.7 202,230 + MPMX19_06927 0.25 -0.3 202,231 - MPMX19_06927 0.25 +0.7 202,231 - MPMX19_06927 0.25 +1.7 202,231 - MPMX19_06927 0.25 -0.6 202,272 + MPMX19_06927 0.31 -0.3 202,272 + MPMX19_06927 0.31 -0.4 202,273 - MPMX19_06927 0.32 -2.4 202,273 - MPMX19_06927 0.32 +0.1 202,344 + MPMX19_06927 0.43 +0.7 202,344 + MPMX19_06927 0.43 -1.3 202,344 + MPMX19_06927 0.43 -1.9 202,344 + MPMX19_06927 0.43 -0.9 202,345 - MPMX19_06927 0.43 +0.4 202,345 - MPMX19_06927 0.43 -1.4 202,404 - MPMX19_06927 0.52 -0.6 202,416 + MPMX19_06927 0.54 -0.3 202,416 + MPMX19_06927 0.54 -1.4 202,416 + MPMX19_06927 0.54 +2.3 202,416 + MPMX19_06927 0.54 +0.4 202,416 + MPMX19_06927 0.54 -1.4 202,417 - MPMX19_06927 0.54 -0.5 202,417 - MPMX19_06927 0.54 -0.6 202,417 - MPMX19_06927 0.54 -0.9 202,855 + MPMX19_06928 0.39 -0.3 202,856 - MPMX19_06928 0.40 +0.1 202,918 - MPMX19_06928 0.62 -1.3 202,918 - MPMX19_06928 0.62 +0.7 202,918 - MPMX19_06928 0.62 -1.8 203,221 + +1.5 203,221 + +0.7 203,378 + MPMX19_06929 0.15 -0.4 203,435 + MPMX19_06929 0.33 +0.1 203,436 - MPMX19_06929 0.34 +1.3 203,436 - MPMX19_06929 0.34 +0.1 203,436 - MPMX19_06929 0.34 -0.4 203,436 - MPMX19_06929 0.34 +0.1 203,436 - MPMX19_06929 0.34 -0.3 203,775 + +0.3 203,776 - -0.3 203,810 + -0.3 203,811 - -0.7 203,826 + -0.4 203,843 - -1.0 203,862 + +0.1 203,863 - +0.4 203,863 - +0.0
Or see this region's nucleotide sequence