Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06922 and MPMX19_06923 are separated by 29 nucleotides MPMX19_06923 and MPMX19_06924 overlap by 46 nucleotides MPMX19_06924 and MPMX19_06925 are separated by 278 nucleotides
MPMX19_06922: MPMX19_06922 - hypothetical protein, at 197,289 to 197,678
_06922
MPMX19_06923: MPMX19_06923 - hypothetical protein, at 197,708 to 198,541
_06923
MPMX19_06924: MPMX19_06924 - hypothetical protein, at 198,496 to 199,911
_06924
MPMX19_06925: MPMX19_06925 - Putative HMP/thiamine import ATP-binding protein YkoD, at 200,190 to 201,533
_06925
Position (kb) 198
199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 197.619 kb on + strand, within MPMX19_06922 at 197.620 kb on - strand, within MPMX19_06922 at 197.711 kb on + strand at 197.711 kb on + strand at 197.711 kb on + strand at 197.711 kb on + strand at 197.711 kb on + strand at 197.711 kb on + strand at 197.712 kb on - strand at 197.712 kb on - strand at 197.712 kb on - strand at 197.712 kb on - strand at 197.712 kb on - strand at 198.125 kb on + strand, within MPMX19_06923 at 198.125 kb on + strand, within MPMX19_06923 at 198.212 kb on + strand, within MPMX19_06923 at 198.212 kb on + strand, within MPMX19_06923 at 198.212 kb on + strand, within MPMX19_06923 at 198.212 kb on + strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923 at 198.213 kb on - strand, within MPMX19_06923 at 198.495 kb on + strand at 198.625 kb on + strand at 198.625 kb on + strand at 198.625 kb on + strand at 198.625 kb on + strand at 198.625 kb on + strand at 198.625 kb on + strand at 198.625 kb on + strand at 198.625 kb on + strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.626 kb on - strand at 198.905 kb on - strand, within MPMX19_06924 at 198.905 kb on - strand, within MPMX19_06924 at 198.925 kb on + strand, within MPMX19_06924 at 198.925 kb on + strand, within MPMX19_06924 at 198.931 kb on + strand, within MPMX19_06924 at 199.140 kb on + strand, within MPMX19_06924 at 199.140 kb on + strand, within MPMX19_06924 at 199.140 kb on + strand, within MPMX19_06924 at 199.140 kb on + strand, within MPMX19_06924 at 199.140 kb on + strand, within MPMX19_06924 at 199.140 kb on + strand, within MPMX19_06924 at 199.141 kb on - strand, within MPMX19_06924 at 199.141 kb on - strand, within MPMX19_06924 at 199.141 kb on - strand, within MPMX19_06924 at 199.141 kb on - strand, within MPMX19_06924 at 199.141 kb on - strand, within MPMX19_06924 at 199.141 kb on - strand, within MPMX19_06924 at 199.810 kb on + strand at 199.810 kb on + strand at 199.810 kb on + strand at 199.810 kb on + strand at 199.811 kb on - strand at 199.811 kb on - strand at 199.812 kb on + strand at 199.812 kb on + strand at 199.812 kb on + strand at 199.812 kb on + strand at 199.813 kb on - strand at 199.813 kb on - strand at 199.843 kb on - strand at 199.907 kb on + strand at 199.907 kb on + strand at 199.907 kb on + strand at 199.907 kb on + strand at 200.063 kb on - strand at 200.095 kb on + strand at 200.095 kb on + strand at 200.095 kb on + strand at 200.096 kb on - strand at 200.096 kb on - strand at 200.096 kb on - strand at 200.149 kb on + strand at 200.149 kb on + strand at 200.149 kb on + strand at 200.149 kb on + strand at 200.149 kb on + strand at 200.150 kb on - strand at 200.150 kb on - strand at 200.150 kb on - strand at 200.159 kb on + strand at 200.173 kb on + strand at 200.173 kb on + strand at 200.174 kb on - strand at 200.174 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 197,619 + MPMX19_06922 0.85 -1.3 197,620 - MPMX19_06922 0.85 +1.0 197,711 + +0.7 197,711 + -0.3 197,711 + -0.3 197,711 + -1.1 197,711 + +1.0 197,711 + -0.6 197,712 - +0.1 197,712 - -0.2 197,712 - -1.4 197,712 - -0.4 197,712 - -0.3 198,125 + MPMX19_06923 0.50 -0.1 198,125 + MPMX19_06923 0.50 -0.1 198,212 + MPMX19_06923 0.60 -2.8 198,212 + MPMX19_06923 0.60 +1.3 198,212 + MPMX19_06923 0.60 -2.2 198,212 + MPMX19_06923 0.60 +0.1 198,213 - MPMX19_06923 0.61 -0.6 198,213 - MPMX19_06923 0.61 -1.7 198,213 - MPMX19_06923 0.61 -0.4 198,213 - MPMX19_06923 0.61 +0.6 198,213 - MPMX19_06923 0.61 +0.4 198,495 + +0.1 198,625 + -0.3 198,625 + -0.2 198,625 + -0.8 198,625 + +2.1 198,625 + -1.7 198,625 + -0.6 198,625 + +0.1 198,625 + -0.3 198,626 - -0.1 198,626 - +0.9 198,626 - +0.1 198,626 - +1.7 198,626 - +0.4 198,626 - -1.0 198,626 - -0.5 198,626 - -1.6 198,626 - -0.4 198,626 - -1.3 198,626 - +1.1 198,626 - +1.1 198,626 - +1.4 198,626 - -0.3 198,626 - -1.4 198,626 - -1.4 198,626 - +1.0 198,626 - -0.4 198,626 - +0.1 198,905 - MPMX19_06924 0.29 -0.9 198,905 - MPMX19_06924 0.29 -2.2 198,925 + MPMX19_06924 0.30 -2.0 198,925 + MPMX19_06924 0.30 -0.6 198,931 + MPMX19_06924 0.31 -0.6 199,140 + MPMX19_06924 0.45 -1.1 199,140 + MPMX19_06924 0.45 -1.3 199,140 + MPMX19_06924 0.45 -0.1 199,140 + MPMX19_06924 0.45 -1.7 199,140 + MPMX19_06924 0.45 +0.4 199,140 + MPMX19_06924 0.45 +1.7 199,141 - MPMX19_06924 0.46 +0.4 199,141 - MPMX19_06924 0.46 -1.3 199,141 - MPMX19_06924 0.46 -0.9 199,141 - MPMX19_06924 0.46 -0.2 199,141 - MPMX19_06924 0.46 -2.9 199,141 - MPMX19_06924 0.46 -0.9 199,810 + -1.1 199,810 + -1.4 199,810 + -0.1 199,810 + +0.7 199,811 - -0.9 199,811 - +0.1 199,812 + -0.6 199,812 + -1.2 199,812 + -0.3 199,812 + -0.9 199,813 - -0.3 199,813 - -0.3 199,843 - -2.5 199,907 + +0.1 199,907 + -0.9 199,907 + +0.7 199,907 + -0.1 200,063 - -0.9 200,095 + +0.3 200,095 + +1.3 200,095 + -0.6 200,096 - +1.3 200,096 - +0.6 200,096 - -0.6 200,149 + -1.7 200,149 + +0.1 200,149 + +0.7 200,149 + -0.1 200,149 + -0.9 200,150 - -0.6 200,150 - -0.9 200,150 - -0.7 200,159 + +1.7 200,173 + -0.3 200,173 + +1.1 200,174 - +0.2 200,174 - -0.6
Or see this region's nucleotide sequence