Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06525

Experiment: NF_with10percent_fullN

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06524 and MPMX19_06525 are separated by 2 nucleotidesMPMX19_06525 and MPMX19_06526 are separated by 10 nucleotidesMPMX19_06526 and MPMX19_06527 overlap by 4 nucleotides MPMX19_06524: MPMX19_06524 - hypothetical protein, at 310,367 to 311,845 _06524 MPMX19_06525: MPMX19_06525 - Adenine deaminase, at 311,848 to 313,527 _06525 MPMX19_06526: MPMX19_06526 - Putative aliphatic sulfonates transport permease protein SsuC, at 313,538 to 314,431 _06526 MPMX19_06527: MPMX19_06527 - Bicarbonate transport ATP-binding protein CmpD, at 314,428 to 315,225 _06527 Position (kb) 311 312 313 314Strain fitness (log2 ratio) -2 -1 0 1at 311.500 kb on - strand, within MPMX19_06524at 311.568 kb on - strand, within MPMX19_06524at 311.568 kb on - strand, within MPMX19_06524at 311.694 kb on + strand, within MPMX19_06524at 311.694 kb on + strand, within MPMX19_06524at 311.694 kb on + strand, within MPMX19_06524at 311.694 kb on + strand, within MPMX19_06524at 311.694 kb on + strand, within MPMX19_06524at 311.695 kb on - strand, within MPMX19_06524at 311.695 kb on - strand, within MPMX19_06524at 311.695 kb on - strand, within MPMX19_06524at 311.695 kb on - strand, within MPMX19_06524at 311.695 kb on - strand, within MPMX19_06524at 311.695 kb on - strand, within MPMX19_06524at 311.695 kb on - strand, within MPMX19_06524at 312.108 kb on + strand, within MPMX19_06525at 312.109 kb on - strand, within MPMX19_06525at 312.237 kb on - strand, within MPMX19_06525at 312.575 kb on + strand, within MPMX19_06525at 312.812 kb on + strand, within MPMX19_06525at 312.812 kb on + strand, within MPMX19_06525at 312.812 kb on + strand, within MPMX19_06525at 312.812 kb on + strand, within MPMX19_06525at 312.812 kb on + strand, within MPMX19_06525at 312.945 kb on - strand, within MPMX19_06525at 313.076 kb on + strand, within MPMX19_06525at 313.076 kb on + strand, within MPMX19_06525at 313.076 kb on + strand, within MPMX19_06525at 313.076 kb on + strand, within MPMX19_06525at 313.076 kb on + strand, within MPMX19_06525at 313.076 kb on + strand, within MPMX19_06525at 313.076 kb on + strand, within MPMX19_06525at 313.076 kb on + strand, within MPMX19_06525at 313.076 kb on + strand, within MPMX19_06525at 313.683 kb on + strand, within MPMX19_06526at 313.683 kb on + strand, within MPMX19_06526at 313.683 kb on + strand, within MPMX19_06526at 313.683 kb on + strand, within MPMX19_06526at 313.683 kb on + strand, within MPMX19_06526at 313.683 kb on + strand, within MPMX19_06526at 313.683 kb on + strand, within MPMX19_06526at 313.683 kb on + strand, within MPMX19_06526at 313.683 kb on + strand, within MPMX19_06526at 313.769 kb on + strand, within MPMX19_06526at 313.769 kb on + strand, within MPMX19_06526at 313.769 kb on + strand, within MPMX19_06526at 313.769 kb on + strand, within MPMX19_06526at 313.769 kb on + strand, within MPMX19_06526at 313.769 kb on + strand, within MPMX19_06526at 313.770 kb on - strand, within MPMX19_06526at 313.770 kb on - strand, within MPMX19_06526at 313.770 kb on - strand, within MPMX19_06526at 313.770 kb on - strand, within MPMX19_06526at 313.852 kb on - strand, within MPMX19_06526at 314.338 kb on + strand, within MPMX19_06526at 314.504 kb on + strandat 314.504 kb on + strandat 314.505 kb on - strandat 314.505 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
remove
311,500 - MPMX19_06524 0.77 +0.0
311,568 - MPMX19_06524 0.81 -0.4
311,568 - MPMX19_06524 0.81 +0.5
311,694 + MPMX19_06524 0.90 -0.4
311,694 + MPMX19_06524 0.90 -0.4
311,694 + MPMX19_06524 0.90 -0.4
311,694 + MPMX19_06524 0.90 -0.8
311,694 + MPMX19_06524 0.90 +0.9
311,695 - MPMX19_06524 0.90 -0.4
311,695 - MPMX19_06524 0.90 -0.8
311,695 - MPMX19_06524 0.90 +0.8
311,695 - MPMX19_06524 0.90 -1.0
311,695 - MPMX19_06524 0.90 -1.3
311,695 - MPMX19_06524 0.90 +1.6
311,695 - MPMX19_06524 0.90 +0.4
312,108 + MPMX19_06525 0.15 -0.4
312,109 - MPMX19_06525 0.16 -0.7
312,237 - MPMX19_06525 0.23 -0.7
312,575 + MPMX19_06525 0.43 +1.6
312,812 + MPMX19_06525 0.57 -1.5
312,812 + MPMX19_06525 0.57 -0.4
312,812 + MPMX19_06525 0.57 -1.2
312,812 + MPMX19_06525 0.57 +0.0
312,812 + MPMX19_06525 0.57 -0.5
312,945 - MPMX19_06525 0.65 +0.4
313,076 + MPMX19_06525 0.73 +0.8
313,076 + MPMX19_06525 0.73 +0.3
313,076 + MPMX19_06525 0.73 -1.2
313,076 + MPMX19_06525 0.73 -2.4
313,076 + MPMX19_06525 0.73 -1.5
313,076 + MPMX19_06525 0.73 +0.0
313,076 + MPMX19_06525 0.73 -0.7
313,076 + MPMX19_06525 0.73 -0.8
313,076 + MPMX19_06525 0.73 -1.7
313,683 + MPMX19_06526 0.16 -1.0
313,683 + MPMX19_06526 0.16 +0.0
313,683 + MPMX19_06526 0.16 +1.0
313,683 + MPMX19_06526 0.16 +1.6
313,683 + MPMX19_06526 0.16 +0.2
313,683 + MPMX19_06526 0.16 -1.2
313,683 + MPMX19_06526 0.16 -1.5
313,683 + MPMX19_06526 0.16 -1.0
313,683 + MPMX19_06526 0.16 +0.7
313,769 + MPMX19_06526 0.26 +0.3
313,769 + MPMX19_06526 0.26 -0.4
313,769 + MPMX19_06526 0.26 -1.0
313,769 + MPMX19_06526 0.26 +0.0
313,769 + MPMX19_06526 0.26 +0.4
313,769 + MPMX19_06526 0.26 -2.2
313,770 - MPMX19_06526 0.26 -1.7
313,770 - MPMX19_06526 0.26 -0.7
313,770 - MPMX19_06526 0.26 -0.7
313,770 - MPMX19_06526 0.26 +0.5
313,852 - MPMX19_06526 0.35 +0.3
314,338 + MPMX19_06526 0.89 -0.5
314,504 + +0.6
314,504 + -0.5
314,505 - -0.4
314,505 - -1.4

Or see this region's nucleotide sequence