Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06423

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06422 and MPMX19_06423 are separated by 265 nucleotidesMPMX19_06423 and MPMX19_06424 are separated by 19 nucleotides MPMX19_06422: MPMX19_06422 - hypothetical protein, at 194,444 to 194,911 _06422 MPMX19_06423: MPMX19_06423 - hypothetical protein, at 195,177 to 195,776 _06423 MPMX19_06424: MPMX19_06424 - hypothetical protein, at 195,796 to 197,067 _06424 Position (kb) 195 196Strain fitness (log2 ratio) -2 -1 0 1 2at 194.235 kb on + strandat 194.280 kb on + strandat 194.343 kb on - strandat 194.343 kb on - strandat 194.422 kb on + strandat 194.422 kb on + strandat 194.422 kb on + strandat 194.422 kb on + strandat 194.422 kb on + strandat 194.422 kb on + strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.423 kb on - strandat 194.531 kb on - strand, within MPMX19_06422at 194.556 kb on + strand, within MPMX19_06422at 194.662 kb on + strand, within MPMX19_06422at 194.662 kb on + strand, within MPMX19_06422at 194.822 kb on + strand, within MPMX19_06422at 194.822 kb on + strand, within MPMX19_06422at 194.823 kb on - strand, within MPMX19_06422at 194.823 kb on - strand, within MPMX19_06422at 194.847 kb on + strand, within MPMX19_06422at 194.847 kb on + strand, within MPMX19_06422at 194.847 kb on + strand, within MPMX19_06422at 194.847 kb on + strand, within MPMX19_06422at 194.847 kb on + strand, within MPMX19_06422at 194.847 kb on + strand, within MPMX19_06422at 194.848 kb on - strand, within MPMX19_06422at 194.848 kb on - strand, within MPMX19_06422at 194.992 kb on - strandat 195.105 kb on + strandat 195.105 kb on + strandat 195.105 kb on + strandat 195.105 kb on + strandat 195.105 kb on + strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.106 kb on - strandat 195.143 kb on - strandat 195.341 kb on + strand, within MPMX19_06423at 195.342 kb on - strand, within MPMX19_06423at 195.342 kb on - strand, within MPMX19_06423at 195.342 kb on - strand, within MPMX19_06423at 195.342 kb on - strand, within MPMX19_06423at 195.365 kb on + strand, within MPMX19_06423at 195.439 kb on + strand, within MPMX19_06423at 195.439 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.519 kb on + strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.520 kb on - strand, within MPMX19_06423at 195.521 kb on + strand, within MPMX19_06423at 195.521 kb on + strand, within MPMX19_06423at 195.521 kb on + strand, within MPMX19_06423at 195.522 kb on - strand, within MPMX19_06423at 195.522 kb on - strand, within MPMX19_06423at 195.522 kb on - strand, within MPMX19_06423at 195.522 kb on - strand, within MPMX19_06423at 195.568 kb on + strand, within MPMX19_06423at 195.568 kb on + strand, within MPMX19_06423at 195.569 kb on - strand, within MPMX19_06423at 195.661 kb on + strand, within MPMX19_06423at 195.661 kb on + strand, within MPMX19_06423at 195.661 kb on + strand, within MPMX19_06423at 195.661 kb on + strand, within MPMX19_06423at 195.661 kb on + strand, within MPMX19_06423at 195.885 kb on - strandat 195.893 kb on + strandat 195.894 kb on - strandat 196.049 kb on + strand, within MPMX19_06424at 196.050 kb on - strand, within MPMX19_06424at 196.050 kb on - strand, within MPMX19_06424at 196.211 kb on + strand, within MPMX19_06424at 196.211 kb on + strand, within MPMX19_06424at 196.212 kb on - strand, within MPMX19_06424at 196.212 kb on - strand, within MPMX19_06424at 196.212 kb on - strand, within MPMX19_06424at 196.250 kb on + strand, within MPMX19_06424at 196.250 kb on + strand, within MPMX19_06424at 196.250 kb on + strand, within MPMX19_06424at 196.292 kb on + strand, within MPMX19_06424at 196.496 kb on + strand, within MPMX19_06424at 196.576 kb on + strand, within MPMX19_06424at 196.577 kb on - strand, within MPMX19_06424at 196.577 kb on - strand, within MPMX19_06424at 196.586 kb on + strand, within MPMX19_06424at 196.587 kb on - strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.640 kb on + strand, within MPMX19_06424at 196.641 kb on - strand, within MPMX19_06424at 196.641 kb on - strand, within MPMX19_06424at 196.641 kb on - strand, within MPMX19_06424at 196.641 kb on - strand, within MPMX19_06424

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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194,235 + -1.6
194,280 + -1.5
194,343 - +0.0
194,343 - +0.9
194,422 + +0.0
194,422 + -0.2
194,422 + +0.2
194,422 + -0.2
194,422 + -0.4
194,422 + -1.8
194,423 - +0.5
194,423 - -0.7
194,423 - +0.6
194,423 - +2.0
194,423 - -1.4
194,423 - -0.4
194,423 - -0.7
194,423 - +0.6
194,423 - -0.1
194,423 - -1.0
194,423 - -0.3
194,531 - MPMX19_06422 0.19 -0.7
194,556 + MPMX19_06422 0.24 +0.3
194,662 + MPMX19_06422 0.47 +2.0
194,662 + MPMX19_06422 0.47 +0.4
194,822 + MPMX19_06422 0.81 -1.2
194,822 + MPMX19_06422 0.81 -2.1
194,823 - MPMX19_06422 0.81 -1.7
194,823 - MPMX19_06422 0.81 +0.0
194,847 + MPMX19_06422 0.86 -0.7
194,847 + MPMX19_06422 0.86 -1.7
194,847 + MPMX19_06422 0.86 +1.0
194,847 + MPMX19_06422 0.86 -0.8
194,847 + MPMX19_06422 0.86 +0.9
194,847 + MPMX19_06422 0.86 -0.7
194,848 - MPMX19_06422 0.86 -0.7
194,848 - MPMX19_06422 0.86 +0.0
194,992 - -1.5
195,105 + -1.1
195,105 + -0.7
195,105 + -2.0
195,105 + -1.2
195,105 + +0.5
195,106 - -1.8
195,106 - +0.2
195,106 - -1.2
195,106 - -0.3
195,106 - +0.0
195,106 - +0.2
195,106 - +0.6
195,106 - +0.5
195,106 - -0.1
195,106 - -0.4
195,106 - +0.6
195,143 - -0.7
195,341 + MPMX19_06423 0.27 -0.4
195,342 - MPMX19_06423 0.28 -0.3
195,342 - MPMX19_06423 0.28 -1.0
195,342 - MPMX19_06423 0.28 +0.2
195,342 - MPMX19_06423 0.28 -0.7
195,365 + MPMX19_06423 0.31 -1.3
195,439 + MPMX19_06423 0.44 +0.0
195,439 + MPMX19_06423 0.44 -1.5
195,519 + MPMX19_06423 0.57 -1.4
195,519 + MPMX19_06423 0.57 +0.0
195,519 + MPMX19_06423 0.57 +0.0
195,519 + MPMX19_06423 0.57 -0.4
195,519 + MPMX19_06423 0.57 -0.0
195,519 + MPMX19_06423 0.57 +0.6
195,519 + MPMX19_06423 0.57 -1.2
195,519 + MPMX19_06423 0.57 -1.0
195,519 + MPMX19_06423 0.57 -1.5
195,520 - MPMX19_06423 0.57 -1.4
195,520 - MPMX19_06423 0.57 +0.3
195,520 - MPMX19_06423 0.57 -1.0
195,520 - MPMX19_06423 0.57 -1.5
195,520 - MPMX19_06423 0.57 -0.7
195,520 - MPMX19_06423 0.57 -0.8
195,520 - MPMX19_06423 0.57 -1.0
195,520 - MPMX19_06423 0.57 -0.4
195,520 - MPMX19_06423 0.57 +0.3
195,520 - MPMX19_06423 0.57 -1.3
195,520 - MPMX19_06423 0.57 -1.5
195,520 - MPMX19_06423 0.57 -0.9
195,520 - MPMX19_06423 0.57 -0.4
195,521 + MPMX19_06423 0.57 -0.7
195,521 + MPMX19_06423 0.57 -2.7
195,521 + MPMX19_06423 0.57 -2.7
195,522 - MPMX19_06423 0.57 -0.7
195,522 - MPMX19_06423 0.57 -1.5
195,522 - MPMX19_06423 0.57 -0.8
195,522 - MPMX19_06423 0.57 -0.8
195,568 + MPMX19_06423 0.65 -1.9
195,568 + MPMX19_06423 0.65 -1.4
195,569 - MPMX19_06423 0.65 -0.2
195,661 + MPMX19_06423 0.81 -1.0
195,661 + MPMX19_06423 0.81 -1.4
195,661 + MPMX19_06423 0.81 -1.0
195,661 + MPMX19_06423 0.81 +0.0
195,661 + MPMX19_06423 0.81 -1.0
195,885 - +0.3
195,893 + -2.0
195,894 - -1.2
196,049 + MPMX19_06424 0.20 -0.7
196,050 - MPMX19_06424 0.20 -0.1
196,050 - MPMX19_06424 0.20 -0.7
196,211 + MPMX19_06424 0.33 -1.8
196,211 + MPMX19_06424 0.33 +0.0
196,212 - MPMX19_06424 0.33 -2.5
196,212 - MPMX19_06424 0.33 -0.8
196,212 - MPMX19_06424 0.33 -1.3
196,250 + MPMX19_06424 0.36 -1.4
196,250 + MPMX19_06424 0.36 +0.0
196,250 + MPMX19_06424 0.36 -1.5
196,292 + MPMX19_06424 0.39 -2.5
196,496 + MPMX19_06424 0.55 +0.6
196,576 + MPMX19_06424 0.61 -0.1
196,577 - MPMX19_06424 0.61 -1.0
196,577 - MPMX19_06424 0.61 +2.0
196,586 + MPMX19_06424 0.62 -0.3
196,587 - MPMX19_06424 0.62 +1.0
196,640 + MPMX19_06424 0.66 -0.0
196,640 + MPMX19_06424 0.66 +1.0
196,640 + MPMX19_06424 0.66 -1.7
196,640 + MPMX19_06424 0.66 -0.8
196,640 + MPMX19_06424 0.66 -2.5
196,640 + MPMX19_06424 0.66 -1.1
196,640 + MPMX19_06424 0.66 -0.2
196,641 - MPMX19_06424 0.66 -1.0
196,641 - MPMX19_06424 0.66 -0.6
196,641 - MPMX19_06424 0.66 -0.7
196,641 - MPMX19_06424 0.66 -1.2

Or see this region's nucleotide sequence