Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06194

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06191 and MPMX19_06192 are separated by 12 nucleotidesMPMX19_06192 and MPMX19_06193 are separated by 27 nucleotidesMPMX19_06193 and MPMX19_06194 are separated by 11 nucleotidesMPMX19_06194 and MPMX19_06195 are separated by 24 nucleotidesMPMX19_06195 and MPMX19_06196 are separated by 116 nucleotides MPMX19_06191: MPMX19_06191 - hypothetical protein, at 381,154 to 381,936 _06191 MPMX19_06192: MPMX19_06192 - hypothetical protein, at 381,949 to 382,215 _06192 MPMX19_06193: MPMX19_06193 - Flagellar hook-basal body complex protein FliE, at 382,243 to 382,602 _06193 MPMX19_06194: MPMX19_06194 - Flagellar basal-body rod protein FlgC, at 382,614 to 383,033 _06194 MPMX19_06195: MPMX19_06195 - hypothetical protein, at 383,058 to 383,450 _06195 MPMX19_06196: MPMX19_06196 - Flagellum-specific ATP synthase, at 383,567 to 384,934 _06196 Position (kb) 382 383 384Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 381.813 kb on - strand, within MPMX19_06191at 381.813 kb on - strand, within MPMX19_06191at 381.813 kb on - strand, within MPMX19_06191at 381.813 kb on - strand, within MPMX19_06191at 381.884 kb on - strandat 381.989 kb on + strand, within MPMX19_06192at 381.989 kb on + strand, within MPMX19_06192at 381.989 kb on + strand, within MPMX19_06192at 381.990 kb on - strand, within MPMX19_06192at 381.990 kb on - strand, within MPMX19_06192at 381.990 kb on - strand, within MPMX19_06192at 381.990 kb on - strand, within MPMX19_06192at 381.990 kb on - strand, within MPMX19_06192at 382.006 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.007 kb on + strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.008 kb on - strand, within MPMX19_06192at 382.271 kb on + strandat 382.271 kb on + strandat 382.272 kb on - strandat 382.272 kb on - strandat 382.565 kb on + strand, within MPMX19_06193at 382.565 kb on + strand, within MPMX19_06193at 382.565 kb on + strand, within MPMX19_06193at 382.566 kb on - strand, within MPMX19_06193at 382.566 kb on - strand, within MPMX19_06193at 382.566 kb on - strand, within MPMX19_06193at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.753 kb on + strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.754 kb on - strand, within MPMX19_06194at 382.789 kb on + strand, within MPMX19_06194at 382.789 kb on + strand, within MPMX19_06194at 382.789 kb on + strand, within MPMX19_06194at 382.789 kb on + strand, within MPMX19_06194at 382.790 kb on - strand, within MPMX19_06194at 382.898 kb on - strand, within MPMX19_06194at 382.925 kb on + strand, within MPMX19_06194at 382.925 kb on + strand, within MPMX19_06194at 382.926 kb on - strand, within MPMX19_06194at 383.050 kb on + strandat 383.050 kb on + strandat 383.051 kb on - strandat 383.051 kb on - strandat 383.051 kb on - strandat 383.051 kb on - strandat 383.051 kb on - strandat 383.051 kb on - strandat 383.339 kb on - strand, within MPMX19_06195at 383.398 kb on + strand, within MPMX19_06195at 383.398 kb on + strand, within MPMX19_06195at 383.398 kb on + strand, within MPMX19_06195at 383.399 kb on - strand, within MPMX19_06195at 383.524 kb on + strandat 383.524 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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381,813 - MPMX19_06191 0.84 +0.5
381,813 - MPMX19_06191 0.84 -0.7
381,813 - MPMX19_06191 0.84 -1.7
381,813 - MPMX19_06191 0.84 -0.9
381,884 - -0.4
381,989 + MPMX19_06192 0.15 -0.5
381,989 + MPMX19_06192 0.15 +1.0
381,989 + MPMX19_06192 0.15 +0.8
381,990 - MPMX19_06192 0.15 -1.1
381,990 - MPMX19_06192 0.15 +1.5
381,990 - MPMX19_06192 0.15 -1.5
381,990 - MPMX19_06192 0.15 -1.7
381,990 - MPMX19_06192 0.15 -0.2
382,006 + MPMX19_06192 0.21 -1.3
382,007 + MPMX19_06192 0.22 -0.1
382,007 + MPMX19_06192 0.22 -1.5
382,007 + MPMX19_06192 0.22 -0.5
382,007 + MPMX19_06192 0.22 -0.5
382,007 + MPMX19_06192 0.22 -1.3
382,007 + MPMX19_06192 0.22 -1.1
382,007 + MPMX19_06192 0.22 -0.1
382,007 + MPMX19_06192 0.22 -1.5
382,007 + MPMX19_06192 0.22 -1.3
382,007 + MPMX19_06192 0.22 -3.0
382,007 + MPMX19_06192 0.22 -1.3
382,007 + MPMX19_06192 0.22 -2.7
382,007 + MPMX19_06192 0.22 -1.2
382,007 + MPMX19_06192 0.22 -0.6
382,007 + MPMX19_06192 0.22 +0.8
382,007 + MPMX19_06192 0.22 -0.5
382,007 + MPMX19_06192 0.22 -0.8
382,007 + MPMX19_06192 0.22 -1.6
382,007 + MPMX19_06192 0.22 +0.7
382,007 + MPMX19_06192 0.22 -0.1
382,007 + MPMX19_06192 0.22 +0.5
382,008 - MPMX19_06192 0.22 +0.5
382,008 - MPMX19_06192 0.22 -0.8
382,008 - MPMX19_06192 0.22 -0.3
382,008 - MPMX19_06192 0.22 -0.5
382,008 - MPMX19_06192 0.22 -0.4
382,008 - MPMX19_06192 0.22 +0.5
382,008 - MPMX19_06192 0.22 +0.1
382,008 - MPMX19_06192 0.22 +0.5
382,008 - MPMX19_06192 0.22 -0.8
382,008 - MPMX19_06192 0.22 +1.8
382,008 - MPMX19_06192 0.22 -0.0
382,008 - MPMX19_06192 0.22 -1.1
382,008 - MPMX19_06192 0.22 -0.1
382,271 + +0.2
382,271 + -1.3
382,272 - -1.5
382,272 - +0.3
382,565 + MPMX19_06193 0.89 +0.5
382,565 + MPMX19_06193 0.89 +0.2
382,565 + MPMX19_06193 0.89 +1.1
382,566 - MPMX19_06193 0.90 -1.1
382,566 - MPMX19_06193 0.90 -0.1
382,566 - MPMX19_06193 0.90 -0.3
382,753 + MPMX19_06194 0.33 -0.1
382,753 + MPMX19_06194 0.33 -1.1
382,753 + MPMX19_06194 0.33 +0.2
382,753 + MPMX19_06194 0.33 -3.1
382,753 + MPMX19_06194 0.33 -1.1
382,753 + MPMX19_06194 0.33 +0.5
382,753 + MPMX19_06194 0.33 -1.3
382,753 + MPMX19_06194 0.33 -0.5
382,754 - MPMX19_06194 0.33 -1.1
382,754 - MPMX19_06194 0.33 -1.8
382,754 - MPMX19_06194 0.33 -1.3
382,754 - MPMX19_06194 0.33 -0.5
382,754 - MPMX19_06194 0.33 -0.1
382,754 - MPMX19_06194 0.33 +0.5
382,754 - MPMX19_06194 0.33 +0.3
382,754 - MPMX19_06194 0.33 -0.6
382,754 - MPMX19_06194 0.33 +0.2
382,789 + MPMX19_06194 0.42 +0.9
382,789 + MPMX19_06194 0.42 -0.8
382,789 + MPMX19_06194 0.42 -0.5
382,789 + MPMX19_06194 0.42 -1.3
382,790 - MPMX19_06194 0.42 +0.0
382,898 - MPMX19_06194 0.68 -0.8
382,925 + MPMX19_06194 0.74 -1.1
382,925 + MPMX19_06194 0.74 -0.3
382,926 - MPMX19_06194 0.74 -0.6
383,050 + -0.7
383,050 + -0.9
383,051 - +0.9
383,051 - +1.5
383,051 - -1.1
383,051 - -0.8
383,051 - -2.9
383,051 - -0.8
383,339 - MPMX19_06195 0.72 -0.5
383,398 + MPMX19_06195 0.87 -0.5
383,398 + MPMX19_06195 0.87 -0.6
383,398 + MPMX19_06195 0.87 -0.5
383,399 - MPMX19_06195 0.87 -1.0
383,524 + -0.5
383,524 + -2.0

Or see this region's nucleotide sequence