Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06128 and MPMX19_06129 overlap by 1 nucleotides MPMX19_06129 and MPMX19_06130 are separated by 149 nucleotides MPMX19_06130 and MPMX19_06131 are separated by 226 nucleotides
MPMX19_06128: MPMX19_06128 - hypothetical protein, at 313,872 to 316,703
_06128
MPMX19_06129: MPMX19_06129 - hypothetical protein, at 316,703 to 317,209
_06129
MPMX19_06130: MPMX19_06130 - hypothetical protein, at 317,359 to 319,071
_06130
MPMX19_06131: MPMX19_06131 - Ribose-phosphate pyrophosphokinase, at 319,298 to 320,209
_06131
Position (kb) 317
318
319
320 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 316.441 kb on + strand at 316.441 kb on + strand at 316.441 kb on + strand at 316.441 kb on + strand at 316.441 kb on + strand at 316.441 kb on + strand at 316.441 kb on + strand at 316.441 kb on + strand at 316.441 kb on + strand at 316.441 kb on + strand at 316.442 kb on - strand at 316.442 kb on - strand at 316.442 kb on - strand at 316.442 kb on - strand at 316.442 kb on - strand at 316.442 kb on - strand at 316.442 kb on - strand at 316.442 kb on - strand at 316.442 kb on - strand at 316.442 kb on - strand at 316.442 kb on - strand at 316.442 kb on - strand at 316.715 kb on + strand at 316.715 kb on + strand at 316.715 kb on + strand at 316.715 kb on + strand at 316.715 kb on + strand at 316.716 kb on - strand at 316.716 kb on - strand at 316.716 kb on - strand at 316.716 kb on - strand at 316.716 kb on - strand at 317.079 kb on + strand, within MPMX19_06129 at 317.079 kb on + strand, within MPMX19_06129 at 317.079 kb on + strand, within MPMX19_06129 at 317.079 kb on + strand, within MPMX19_06129 at 317.079 kb on + strand, within MPMX19_06129 at 317.080 kb on - strand, within MPMX19_06129 at 317.080 kb on - strand, within MPMX19_06129 at 317.080 kb on - strand, within MPMX19_06129 at 317.080 kb on - strand, within MPMX19_06129 at 317.203 kb on + strand at 317.203 kb on + strand at 317.203 kb on + strand at 317.203 kb on + strand at 317.203 kb on + strand at 317.203 kb on + strand at 317.203 kb on + strand at 317.203 kb on + strand at 317.203 kb on + strand at 317.203 kb on + strand at 317.203 kb on + strand at 317.203 kb on + strand at 317.203 kb on + strand at 317.203 kb on + strand at 317.203 kb on + strand at 317.203 kb on + strand at 317.203 kb on + strand at 317.204 kb on - strand at 317.204 kb on - strand at 317.204 kb on - strand at 317.204 kb on - strand at 317.204 kb on - strand at 317.204 kb on - strand at 317.204 kb on - strand at 317.204 kb on - strand at 317.204 kb on - strand at 317.204 kb on - strand at 317.288 kb on + strand at 317.288 kb on + strand at 317.288 kb on + strand at 317.288 kb on + strand at 317.288 kb on + strand at 317.288 kb on + strand at 317.289 kb on - strand at 317.289 kb on - strand at 317.289 kb on - strand at 317.289 kb on - strand at 317.300 kb on + strand at 317.300 kb on + strand at 317.301 kb on - strand at 317.312 kb on + strand at 317.315 kb on + strand at 317.316 kb on - strand at 317.316 kb on - strand at 317.318 kb on + strand at 317.319 kb on - strand at 317.319 kb on - strand at 317.582 kb on + strand, within MPMX19_06130 at 317.603 kb on + strand, within MPMX19_06130 at 317.603 kb on + strand, within MPMX19_06130 at 317.604 kb on - strand, within MPMX19_06130 at 317.606 kb on + strand, within MPMX19_06130 at 317.606 kb on + strand, within MPMX19_06130 at 317.606 kb on + strand, within MPMX19_06130 at 317.606 kb on + strand, within MPMX19_06130 at 317.606 kb on + strand, within MPMX19_06130 at 317.607 kb on - strand, within MPMX19_06130 at 317.607 kb on - strand, within MPMX19_06130 at 317.607 kb on - strand, within MPMX19_06130 at 317.607 kb on - strand, within MPMX19_06130 at 317.607 kb on - strand, within MPMX19_06130 at 317.607 kb on - strand, within MPMX19_06130 at 317.607 kb on - strand, within MPMX19_06130 at 318.762 kb on - strand, within MPMX19_06130 at 318.803 kb on + strand, within MPMX19_06130 at 318.804 kb on - strand, within MPMX19_06130 at 318.804 kb on - strand, within MPMX19_06130 at 318.804 kb on - strand, within MPMX19_06130 at 319.307 kb on - strand at 319.455 kb on + strand, within MPMX19_06131 at 319.455 kb on + strand, within MPMX19_06131 at 319.455 kb on + strand, within MPMX19_06131 at 319.455 kb on + strand, within MPMX19_06131 at 319.455 kb on + strand, within MPMX19_06131 at 319.455 kb on + strand, within MPMX19_06131 at 319.455 kb on + strand, within MPMX19_06131 at 319.455 kb on + strand, within MPMX19_06131 at 319.456 kb on - strand, within MPMX19_06131 at 319.456 kb on - strand, within MPMX19_06131 at 319.456 kb on - strand, within MPMX19_06131 at 319.456 kb on - strand, within MPMX19_06131 at 319.456 kb on - strand, within MPMX19_06131 at 319.456 kb on - strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.923 kb on + strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.924 kb on - strand, within MPMX19_06131 at 319.932 kb on + strand, within MPMX19_06131 at 319.932 kb on + strand, within MPMX19_06131 at 319.932 kb on + strand, within MPMX19_06131 at 319.932 kb on + strand, within MPMX19_06131 at 319.932 kb on + strand, within MPMX19_06131 at 319.932 kb on + strand, within MPMX19_06131 at 319.932 kb on + strand, within MPMX19_06131 at 319.932 kb on + strand, within MPMX19_06131 at 319.932 kb on + strand, within MPMX19_06131 at 319.932 kb on + strand, within MPMX19_06131 at 319.932 kb on + strand, within MPMX19_06131 at 319.932 kb on + strand, within MPMX19_06131 at 319.932 kb on + strand, within MPMX19_06131 at 319.932 kb on + strand, within MPMX19_06131 at 319.932 kb on + strand, within MPMX19_06131 at 319.932 kb on + strand, within MPMX19_06131 at 319.932 kb on + strand, within MPMX19_06131 at 319.933 kb on - strand, within MPMX19_06131 at 319.933 kb on - strand, within MPMX19_06131 at 319.933 kb on - strand, within MPMX19_06131 at 319.933 kb on - strand, within MPMX19_06131 at 319.933 kb on - strand, within MPMX19_06131 at 319.933 kb on - strand, within MPMX19_06131 at 319.933 kb on - strand, within MPMX19_06131 at 319.933 kb on - strand, within MPMX19_06131 at 319.933 kb on - strand, within MPMX19_06131 at 319.933 kb on - strand, within MPMX19_06131 at 319.933 kb on - strand, within MPMX19_06131 at 319.933 kb on - strand, within MPMX19_06131 at 320.051 kb on + strand, within MPMX19_06131
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 316,441 + -1.5 316,441 + -0.4 316,441 + -1.7 316,441 + +0.5 316,441 + -1.1 316,441 + +1.1 316,441 + +0.5 316,441 + -2.3 316,441 + -1.1 316,441 + -2.6 316,442 - -1.7 316,442 - -0.8 316,442 - -0.1 316,442 - -0.5 316,442 - -1.9 316,442 - -2.6 316,442 - -0.3 316,442 - -0.7 316,442 - -1.7 316,442 - -1.7 316,442 - -1.3 316,442 - -1.7 316,715 + +1.5 316,715 + -0.8 316,715 + +0.7 316,715 + -0.1 316,715 + +0.1 316,716 - -0.4 316,716 - -0.5 316,716 - -0.1 316,716 - -1.7 316,716 - -0.8 317,079 + MPMX19_06129 0.74 -1.7 317,079 + MPMX19_06129 0.74 -3.4 317,079 + MPMX19_06129 0.74 -0.1 317,079 + MPMX19_06129 0.74 +0.9 317,079 + MPMX19_06129 0.74 -0.1 317,080 - MPMX19_06129 0.74 +0.3 317,080 - MPMX19_06129 0.74 -1.2 317,080 - MPMX19_06129 0.74 -2.0 317,080 - MPMX19_06129 0.74 -0.5 317,203 + +0.5 317,203 + -1.3 317,203 + -1.1 317,203 + -1.4 317,203 + -0.5 317,203 + -0.1 317,203 + +2.1 317,203 + +0.5 317,203 + -1.3 317,203 + +0.5 317,203 + -0.0 317,203 + -0.8 317,203 + -1.4 317,203 + -1.1 317,203 + +0.5 317,203 + -2.3 317,203 + -1.7 317,204 - -1.3 317,204 - +0.2 317,204 - -0.4 317,204 - -2.6 317,204 - -0.8 317,204 - -1.5 317,204 - -1.4 317,204 - -1.5 317,204 - -0.5 317,204 - -0.3 317,288 + -1.7 317,288 + -0.8 317,288 + -0.1 317,288 + -0.8 317,288 + -0.8 317,288 + -2.1 317,289 - -1.1 317,289 - +0.5 317,289 - -1.3 317,289 - -0.1 317,300 + -1.3 317,300 + -1.1 317,301 - -0.3 317,312 + +1.1 317,315 + +1.5 317,316 - -0.1 317,316 - -0.2 317,318 + -1.1 317,319 - +0.2 317,319 - +0.9 317,582 + MPMX19_06130 0.13 -1.8 317,603 + MPMX19_06130 0.14 -0.1 317,603 + MPMX19_06130 0.14 -0.8 317,604 - MPMX19_06130 0.14 -0.8 317,606 + MPMX19_06130 0.14 -0.7 317,606 + MPMX19_06130 0.14 -1.4 317,606 + MPMX19_06130 0.14 -1.6 317,606 + MPMX19_06130 0.14 -1.8 317,606 + MPMX19_06130 0.14 -0.8 317,607 - MPMX19_06130 0.14 -0.5 317,607 - MPMX19_06130 0.14 -0.5 317,607 - MPMX19_06130 0.14 -0.3 317,607 - MPMX19_06130 0.14 -0.5 317,607 - MPMX19_06130 0.14 +0.5 317,607 - MPMX19_06130 0.14 -0.7 317,607 - MPMX19_06130 0.14 +0.5 318,762 - MPMX19_06130 0.82 -1.6 318,803 + MPMX19_06130 0.84 -1.8 318,804 - MPMX19_06130 0.84 -0.8 318,804 - MPMX19_06130 0.84 -0.5 318,804 - MPMX19_06130 0.84 -0.5 319,307 - -0.1 319,455 + MPMX19_06131 0.17 -0.1 319,455 + MPMX19_06131 0.17 +0.5 319,455 + MPMX19_06131 0.17 -0.5 319,455 + MPMX19_06131 0.17 -1.3 319,455 + MPMX19_06131 0.17 -0.5 319,455 + MPMX19_06131 0.17 +0.2 319,455 + MPMX19_06131 0.17 -0.1 319,455 + MPMX19_06131 0.17 -0.8 319,456 - MPMX19_06131 0.17 -2.6 319,456 - MPMX19_06131 0.17 -1.5 319,456 - MPMX19_06131 0.17 -0.8 319,456 - MPMX19_06131 0.17 -0.8 319,456 - MPMX19_06131 0.17 +0.8 319,456 - MPMX19_06131 0.17 -0.8 319,923 + MPMX19_06131 0.69 -0.3 319,923 + MPMX19_06131 0.69 -1.1 319,923 + MPMX19_06131 0.69 +0.0 319,923 + MPMX19_06131 0.69 -1.8 319,923 + MPMX19_06131 0.69 +0.8 319,923 + MPMX19_06131 0.69 +1.5 319,923 + MPMX19_06131 0.69 -1.2 319,923 + MPMX19_06131 0.69 +1.5 319,923 + MPMX19_06131 0.69 -0.1 319,923 + MPMX19_06131 0.69 -0.5 319,923 + MPMX19_06131 0.69 -2.1 319,923 + MPMX19_06131 0.69 -1.0 319,923 + MPMX19_06131 0.69 +0.5 319,923 + MPMX19_06131 0.69 +0.2 319,923 + MPMX19_06131 0.69 +1.5 319,923 + MPMX19_06131 0.69 +0.5 319,923 + MPMX19_06131 0.69 -1.6 319,923 + MPMX19_06131 0.69 -1.8 319,923 + MPMX19_06131 0.69 +1.5 319,923 + MPMX19_06131 0.69 -2.0 319,923 + MPMX19_06131 0.69 +0.9 319,923 + MPMX19_06131 0.69 -1.2 319,923 + MPMX19_06131 0.69 +1.5 319,923 + MPMX19_06131 0.69 -1.3 319,924 - MPMX19_06131 0.69 -0.3 319,924 - MPMX19_06131 0.69 -0.1 319,924 - MPMX19_06131 0.69 -0.8 319,924 - MPMX19_06131 0.69 +0.1 319,924 - MPMX19_06131 0.69 +0.5 319,924 - MPMX19_06131 0.69 -1.4 319,924 - MPMX19_06131 0.69 +0.5 319,924 - MPMX19_06131 0.69 -1.1 319,924 - MPMX19_06131 0.69 +0.9 319,924 - MPMX19_06131 0.69 +0.4 319,924 - MPMX19_06131 0.69 -2.2 319,924 - MPMX19_06131 0.69 -1.8 319,924 - MPMX19_06131 0.69 -1.0 319,924 - MPMX19_06131 0.69 -0.5 319,924 - MPMX19_06131 0.69 -0.5 319,924 - MPMX19_06131 0.69 +1.5 319,924 - MPMX19_06131 0.69 -0.8 319,924 - MPMX19_06131 0.69 +0.5 319,924 - MPMX19_06131 0.69 +0.8 319,924 - MPMX19_06131 0.69 -1.3 319,924 - MPMX19_06131 0.69 -0.1 319,924 - MPMX19_06131 0.69 -2.4 319,924 - MPMX19_06131 0.69 -0.6 319,924 - MPMX19_06131 0.69 +0.5 319,924 - MPMX19_06131 0.69 +1.1 319,932 + MPMX19_06131 0.70 +0.4 319,932 + MPMX19_06131 0.70 -1.1 319,932 + MPMX19_06131 0.70 +1.5 319,932 + MPMX19_06131 0.70 -0.5 319,932 + MPMX19_06131 0.70 +0.3 319,932 + MPMX19_06131 0.70 -1.1 319,932 + MPMX19_06131 0.70 -0.8 319,932 + MPMX19_06131 0.70 +0.9 319,932 + MPMX19_06131 0.70 -0.3 319,932 + MPMX19_06131 0.70 +0.5 319,932 + MPMX19_06131 0.70 -0.1 319,932 + MPMX19_06131 0.70 +0.2 319,932 + MPMX19_06131 0.70 -0.1 319,932 + MPMX19_06131 0.70 +1.1 319,932 + MPMX19_06131 0.70 -1.5 319,932 + MPMX19_06131 0.70 -2.4 319,932 + MPMX19_06131 0.70 -1.8 319,933 - MPMX19_06131 0.70 -1.3 319,933 - MPMX19_06131 0.70 -0.1 319,933 - MPMX19_06131 0.70 -0.7 319,933 - MPMX19_06131 0.70 +0.5 319,933 - MPMX19_06131 0.70 +0.2 319,933 - MPMX19_06131 0.70 -0.5 319,933 - MPMX19_06131 0.70 +0.5 319,933 - MPMX19_06131 0.70 -2.7 319,933 - MPMX19_06131 0.70 -1.5 319,933 - MPMX19_06131 0.70 -0.6 319,933 - MPMX19_06131 0.70 -0.5 319,933 - MPMX19_06131 0.70 -0.8 320,051 + MPMX19_06131 0.83 -0.8
Or see this region's nucleotide sequence