Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06120

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06118 and MPMX19_06119 are separated by 2 nucleotidesMPMX19_06119 and MPMX19_06120 are separated by 81 nucleotidesMPMX19_06120 and MPMX19_06121 are separated by 144 nucleotides MPMX19_06118: MPMX19_06118 - Adenine phosphoribosyltransferase, at 304,237 to 304,752 _06118 MPMX19_06119: MPMX19_06119 - Inner membrane protein YphA, at 304,755 to 305,204 _06119 MPMX19_06120: MPMX19_06120 - hypothetical protein, at 305,286 to 306,242 _06120 MPMX19_06121: MPMX19_06121 - hypothetical protein, at 306,387 to 307,229 _06121 Position (kb) 305 306 307Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 304.297 kb on + strand, within MPMX19_06118at 304.297 kb on + strand, within MPMX19_06118at 304.297 kb on + strand, within MPMX19_06118at 304.297 kb on + strand, within MPMX19_06118at 304.297 kb on + strand, within MPMX19_06118at 304.297 kb on + strand, within MPMX19_06118at 304.297 kb on + strand, within MPMX19_06118at 304.297 kb on + strand, within MPMX19_06118at 304.297 kb on + strand, within MPMX19_06118at 304.297 kb on + strand, within MPMX19_06118at 304.298 kb on - strand, within MPMX19_06118at 304.298 kb on - strand, within MPMX19_06118at 304.298 kb on - strand, within MPMX19_06118at 304.298 kb on - strand, within MPMX19_06118at 304.298 kb on - strand, within MPMX19_06118at 304.510 kb on + strand, within MPMX19_06118at 304.510 kb on + strand, within MPMX19_06118at 304.510 kb on + strand, within MPMX19_06118at 304.510 kb on + strand, within MPMX19_06118at 304.511 kb on - strand, within MPMX19_06118at 304.511 kb on - strand, within MPMX19_06118at 304.522 kb on + strand, within MPMX19_06118at 304.741 kb on + strandat 304.741 kb on + strandat 304.742 kb on - strandat 304.742 kb on - strandat 304.742 kb on - strandat 304.742 kb on - strandat 304.742 kb on - strandat 304.894 kb on + strand, within MPMX19_06119at 304.894 kb on + strand, within MPMX19_06119at 304.895 kb on - strand, within MPMX19_06119at 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.194 kb on + strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.195 kb on - strandat 305.258 kb on + strandat 305.258 kb on + strandat 305.521 kb on + strand, within MPMX19_06120at 305.521 kb on + strand, within MPMX19_06120at 305.521 kb on + strand, within MPMX19_06120at 305.522 kb on - strand, within MPMX19_06120at 305.522 kb on - strand, within MPMX19_06120at 305.608 kb on + strand, within MPMX19_06120at 305.608 kb on + strand, within MPMX19_06120at 305.609 kb on - strand, within MPMX19_06120at 305.665 kb on + strand, within MPMX19_06120at 305.665 kb on + strand, within MPMX19_06120at 305.665 kb on + strand, within MPMX19_06120at 305.665 kb on + strand, within MPMX19_06120at 305.665 kb on + strand, within MPMX19_06120at 305.665 kb on + strand, within MPMX19_06120at 305.666 kb on - strand, within MPMX19_06120at 305.666 kb on - strand, within MPMX19_06120at 305.666 kb on - strand, within MPMX19_06120at 305.666 kb on - strand, within MPMX19_06120at 305.674 kb on + strand, within MPMX19_06120at 305.674 kb on + strand, within MPMX19_06120at 305.674 kb on + strand, within MPMX19_06120at 305.675 kb on - strand, within MPMX19_06120at 305.675 kb on - strand, within MPMX19_06120at 305.675 kb on - strand, within MPMX19_06120at 305.675 kb on - strand, within MPMX19_06120at 305.675 kb on - strand, within MPMX19_06120at 305.675 kb on - strand, within MPMX19_06120at 305.770 kb on + strand, within MPMX19_06120at 305.770 kb on + strand, within MPMX19_06120at 305.770 kb on + strand, within MPMX19_06120at 305.771 kb on - strand, within MPMX19_06120at 305.771 kb on - strand, within MPMX19_06120at 305.771 kb on - strand, within MPMX19_06120at 305.771 kb on - strand, within MPMX19_06120at 305.854 kb on + strand, within MPMX19_06120at 305.855 kb on - strand, within MPMX19_06120at 305.893 kb on + strand, within MPMX19_06120at 305.893 kb on + strand, within MPMX19_06120at 305.893 kb on + strand, within MPMX19_06120at 305.894 kb on - strand, within MPMX19_06120at 305.894 kb on - strand, within MPMX19_06120at 305.894 kb on - strand, within MPMX19_06120at 305.894 kb on - strand, within MPMX19_06120at 305.894 kb on - strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.929 kb on + strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.930 kb on - strand, within MPMX19_06120at 305.932 kb on + strand, within MPMX19_06120at 305.932 kb on + strand, within MPMX19_06120at 305.933 kb on - strand, within MPMX19_06120at 306.088 kb on + strand, within MPMX19_06120at 306.088 kb on + strand, within MPMX19_06120at 306.088 kb on + strand, within MPMX19_06120at 306.088 kb on + strand, within MPMX19_06120at 306.088 kb on + strand, within MPMX19_06120at 306.088 kb on + strand, within MPMX19_06120at 306.088 kb on + strand, within MPMX19_06120at 306.088 kb on + strand, within MPMX19_06120at 306.088 kb on + strand, within MPMX19_06120at 306.089 kb on - strand, within MPMX19_06120at 306.089 kb on - strand, within MPMX19_06120at 306.089 kb on - strand, within MPMX19_06120at 306.089 kb on - strand, within MPMX19_06120at 306.089 kb on - strand, within MPMX19_06120at 306.095 kb on - strand, within MPMX19_06120at 306.339 kb on - strandat 306.829 kb on + strand, within MPMX19_06121at 306.829 kb on + strand, within MPMX19_06121at 306.829 kb on + strand, within MPMX19_06121at 306.830 kb on - strand, within MPMX19_06121at 306.830 kb on - strand, within MPMX19_06121at 306.830 kb on - strand, within MPMX19_06121at 306.830 kb on - strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.973 kb on + strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 306.974 kb on - strand, within MPMX19_06121at 307.078 kb on + strand, within MPMX19_06121at 307.079 kb on - strand, within MPMX19_06121at 307.079 kb on - strand, within MPMX19_06121at 307.079 kb on - strand, within MPMX19_06121at 307.079 kb on - strand, within MPMX19_06121at 307.229 kb on + strandat 307.229 kb on + strandat 307.229 kb on + strandat 307.229 kb on + strandat 307.229 kb on + strandat 307.230 kb on - strandat 307.230 kb on - strandat 307.230 kb on - strandat 307.230 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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304,297 + MPMX19_06118 0.12 -1.1
304,297 + MPMX19_06118 0.12 -1.5
304,297 + MPMX19_06118 0.12 -0.1
304,297 + MPMX19_06118 0.12 -0.5
304,297 + MPMX19_06118 0.12 -0.0
304,297 + MPMX19_06118 0.12 -1.5
304,297 + MPMX19_06118 0.12 -0.5
304,297 + MPMX19_06118 0.12 -0.8
304,297 + MPMX19_06118 0.12 -0.8
304,297 + MPMX19_06118 0.12 -1.4
304,298 - MPMX19_06118 0.12 -2.4
304,298 - MPMX19_06118 0.12 -0.8
304,298 - MPMX19_06118 0.12 -0.7
304,298 - MPMX19_06118 0.12 -0.3
304,298 - MPMX19_06118 0.12 +0.3
304,510 + MPMX19_06118 0.53 +0.5
304,510 + MPMX19_06118 0.53 -0.5
304,510 + MPMX19_06118 0.53 -1.0
304,510 + MPMX19_06118 0.53 -1.9
304,511 - MPMX19_06118 0.53 -0.2
304,511 - MPMX19_06118 0.53 -1.5
304,522 + MPMX19_06118 0.55 +0.9
304,741 + -0.2
304,741 + -1.3
304,742 - -1.1
304,742 - -0.5
304,742 - +0.9
304,742 - +0.5
304,742 - -1.2
304,894 + MPMX19_06119 0.31 -0.5
304,894 + MPMX19_06119 0.31 -0.3
304,895 - MPMX19_06119 0.31 -0.8
305,194 + -1.0
305,194 + -0.8
305,194 + -0.3
305,194 + -1.1
305,194 + -1.3
305,194 + +1.5
305,194 + -0.9
305,194 + -0.1
305,194 + -0.8
305,194 + +0.9
305,194 + -0.5
305,194 + -0.5
305,194 + +0.2
305,194 + -1.3
305,194 + -0.3
305,194 + +0.5
305,194 + -0.6
305,194 + -1.1
305,194 + -0.8
305,194 + +0.5
305,194 + -0.5
305,194 + -0.5
305,194 + -1.8
305,195 - +0.8
305,195 - -0.1
305,195 - +0.5
305,195 - +0.5
305,195 - -0.1
305,195 - -0.1
305,195 - -0.7
305,195 - -0.1
305,195 - -1.1
305,195 - +0.5
305,195 - -2.0
305,195 - +1.5
305,195 - -0.8
305,258 + +0.2
305,258 + -0.5
305,521 + MPMX19_06120 0.25 -0.8
305,521 + MPMX19_06120 0.25 +0.5
305,521 + MPMX19_06120 0.25 +0.5
305,522 - MPMX19_06120 0.25 -0.1
305,522 - MPMX19_06120 0.25 +0.2
305,608 + MPMX19_06120 0.34 -2.1
305,608 + MPMX19_06120 0.34 -0.5
305,609 - MPMX19_06120 0.34 -0.5
305,665 + MPMX19_06120 0.40 +0.9
305,665 + MPMX19_06120 0.40 -0.5
305,665 + MPMX19_06120 0.40 -0.8
305,665 + MPMX19_06120 0.40 -1.5
305,665 + MPMX19_06120 0.40 +0.7
305,665 + MPMX19_06120 0.40 -1.0
305,666 - MPMX19_06120 0.40 -0.1
305,666 - MPMX19_06120 0.40 -0.6
305,666 - MPMX19_06120 0.40 -1.7
305,666 - MPMX19_06120 0.40 -0.8
305,674 + MPMX19_06120 0.41 +1.3
305,674 + MPMX19_06120 0.41 -2.1
305,674 + MPMX19_06120 0.41 -1.2
305,675 - MPMX19_06120 0.41 -0.4
305,675 - MPMX19_06120 0.41 -0.5
305,675 - MPMX19_06120 0.41 -1.3
305,675 - MPMX19_06120 0.41 -0.5
305,675 - MPMX19_06120 0.41 +0.2
305,675 - MPMX19_06120 0.41 -0.9
305,770 + MPMX19_06120 0.51 -0.8
305,770 + MPMX19_06120 0.51 -0.8
305,770 + MPMX19_06120 0.51 +0.5
305,771 - MPMX19_06120 0.51 -2.1
305,771 - MPMX19_06120 0.51 -0.1
305,771 - MPMX19_06120 0.51 -0.3
305,771 - MPMX19_06120 0.51 -1.5
305,854 + MPMX19_06120 0.59 +0.1
305,855 - MPMX19_06120 0.59 -0.5
305,893 + MPMX19_06120 0.63 -1.3
305,893 + MPMX19_06120 0.63 +0.2
305,893 + MPMX19_06120 0.63 +0.1
305,894 - MPMX19_06120 0.64 -0.8
305,894 - MPMX19_06120 0.64 -0.1
305,894 - MPMX19_06120 0.64 +1.5
305,894 - MPMX19_06120 0.64 -1.3
305,894 - MPMX19_06120 0.64 -1.0
305,929 + MPMX19_06120 0.67 -1.5
305,929 + MPMX19_06120 0.67 -1.5
305,929 + MPMX19_06120 0.67 -0.5
305,929 + MPMX19_06120 0.67 -0.1
305,929 + MPMX19_06120 0.67 -0.1
305,929 + MPMX19_06120 0.67 -0.1
305,929 + MPMX19_06120 0.67 -2.2
305,929 + MPMX19_06120 0.67 -1.7
305,929 + MPMX19_06120 0.67 -1.3
305,929 + MPMX19_06120 0.67 -1.3
305,929 + MPMX19_06120 0.67 -0.1
305,929 + MPMX19_06120 0.67 -1.5
305,929 + MPMX19_06120 0.67 -0.1
305,929 + MPMX19_06120 0.67 +0.9
305,929 + MPMX19_06120 0.67 -0.7
305,930 - MPMX19_06120 0.67 -0.5
305,930 - MPMX19_06120 0.67 -1.0
305,930 - MPMX19_06120 0.67 -1.2
305,930 - MPMX19_06120 0.67 -0.4
305,930 - MPMX19_06120 0.67 +1.0
305,930 - MPMX19_06120 0.67 +1.5
305,930 - MPMX19_06120 0.67 -1.5
305,930 - MPMX19_06120 0.67 +0.0
305,930 - MPMX19_06120 0.67 -1.5
305,930 - MPMX19_06120 0.67 +0.8
305,930 - MPMX19_06120 0.67 -0.7
305,932 + MPMX19_06120 0.68 -1.7
305,932 + MPMX19_06120 0.68 -1.7
305,933 - MPMX19_06120 0.68 +0.5
306,088 + MPMX19_06120 0.84 +0.2
306,088 + MPMX19_06120 0.84 -0.1
306,088 + MPMX19_06120 0.84 +0.2
306,088 + MPMX19_06120 0.84 -1.7
306,088 + MPMX19_06120 0.84 -1.6
306,088 + MPMX19_06120 0.84 -0.5
306,088 + MPMX19_06120 0.84 +0.3
306,088 + MPMX19_06120 0.84 -1.3
306,088 + MPMX19_06120 0.84 -0.5
306,089 - MPMX19_06120 0.84 +0.8
306,089 - MPMX19_06120 0.84 -0.9
306,089 - MPMX19_06120 0.84 -1.7
306,089 - MPMX19_06120 0.84 +0.8
306,089 - MPMX19_06120 0.84 +0.5
306,095 - MPMX19_06120 0.85 -0.7
306,339 - -0.8
306,829 + MPMX19_06121 0.52 -3.3
306,829 + MPMX19_06121 0.52 -1.7
306,829 + MPMX19_06121 0.52 -2.3
306,830 - MPMX19_06121 0.53 +1.5
306,830 - MPMX19_06121 0.53 +1.1
306,830 - MPMX19_06121 0.53 -1.1
306,830 - MPMX19_06121 0.53 +0.1
306,973 + MPMX19_06121 0.70 -0.2
306,973 + MPMX19_06121 0.70 +2.2
306,973 + MPMX19_06121 0.70 -0.8
306,973 + MPMX19_06121 0.70 -1.5
306,973 + MPMX19_06121 0.70 -1.5
306,973 + MPMX19_06121 0.70 -0.7
306,973 + MPMX19_06121 0.70 +0.5
306,974 - MPMX19_06121 0.70 +0.5
306,974 - MPMX19_06121 0.70 +0.2
306,974 - MPMX19_06121 0.70 +0.1
306,974 - MPMX19_06121 0.70 +0.1
306,974 - MPMX19_06121 0.70 -0.1
306,974 - MPMX19_06121 0.70 -1.7
306,974 - MPMX19_06121 0.70 +0.5
307,078 + MPMX19_06121 0.82 +1.1
307,079 - MPMX19_06121 0.82 -1.0
307,079 - MPMX19_06121 0.82 +1.3
307,079 - MPMX19_06121 0.82 +0.3
307,079 - MPMX19_06121 0.82 +0.4
307,229 + -0.1
307,229 + -1.7
307,229 + +1.1
307,229 + -0.8
307,229 + -0.8
307,230 - +1.5
307,230 - +1.5
307,230 - -2.2
307,230 - -1.5

Or see this region's nucleotide sequence