Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06025 and MPMX19_06026 are separated by 74 nucleotides MPMX19_06026 and MPMX19_06027 are separated by 168 nucleotides MPMX19_06027 and MPMX19_06028 overlap by 16 nucleotides MPMX19_06028 and MPMX19_06029 are separated by 54 nucleotides
MPMX19_06025: MPMX19_06025 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 177,852 to 178,892
_06025
MPMX19_06026: MPMX19_06026 - hypothetical protein, at 178,967 to 179,530
_06026
MPMX19_06027: MPMX19_06027 - hypothetical protein, at 179,699 to 180,925
_06027
MPMX19_06028: MPMX19_06028 - hypothetical protein, at 180,910 to 181,719
_06028
MPMX19_06029: MPMX19_06029 - Hydroxyacylglutathione hydrolase GloB, at 181,774 to 182,541
_06029
Position (kb) 179
180
181 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 178.893 kb on - strand at 178.893 kb on - strand at 178.893 kb on - strand at 178.893 kb on - strand at 178.893 kb on - strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.968 kb on + strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 178.969 kb on - strand at 179.119 kb on - strand, within MPMX19_06026 at 179.551 kb on - strand at 179.563 kb on + strand at 179.563 kb on + strand at 179.564 kb on - strand at 179.627 kb on + strand at 179.627 kb on + strand at 179.627 kb on + strand at 179.627 kb on + strand at 179.673 kb on + strand at 179.674 kb on - strand at 179.674 kb on - strand at 179.927 kb on + strand, within MPMX19_06027 at 179.927 kb on + strand, within MPMX19_06027 at 179.927 kb on + strand, within MPMX19_06027 at 179.927 kb on + strand, within MPMX19_06027 at 179.927 kb on + strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 179.928 kb on - strand, within MPMX19_06027 at 180.650 kb on - strand, within MPMX19_06027 at 180.923 kb on + strand at 180.923 kb on + strand at 181.574 kb on + strand, within MPMX19_06028 at 181.574 kb on + strand, within MPMX19_06028 at 181.575 kb on - strand, within MPMX19_06028 at 181.575 kb on - strand, within MPMX19_06028 at 181.575 kb on - strand, within MPMX19_06028 at 181.586 kb on + strand, within MPMX19_06028 at 181.586 kb on + strand, within MPMX19_06028 at 181.685 kb on + strand at 181.685 kb on + strand at 181.685 kb on + strand at 181.685 kb on + strand at 181.685 kb on + strand at 181.686 kb on - strand at 181.686 kb on - strand at 181.686 kb on - strand at 181.686 kb on - strand at 181.686 kb on - strand at 181.686 kb on - strand at 181.686 kb on - strand at 181.707 kb on + strand at 181.707 kb on + strand at 181.707 kb on + strand at 181.708 kb on - strand at 181.708 kb on - strand at 181.708 kb on - strand at 181.708 kb on - strand at 181.715 kb on + strand at 181.715 kb on + strand at 181.715 kb on + strand at 181.716 kb on - strand at 181.716 kb on - strand at 181.716 kb on - strand at 181.716 kb on - strand at 181.716 kb on - strand at 181.722 kb on + strand at 181.723 kb on - strand at 181.723 kb on - strand at 181.733 kb on + strand at 181.733 kb on + strand at 181.733 kb on + strand at 181.734 kb on - strand at 181.748 kb on - strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.810 kb on + strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.811 kb on - strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.812 kb on + strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.813 kb on - strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.816 kb on + strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.817 kb on - strand at 181.920 kb on + strand, within MPMX19_06029 at 181.920 kb on + strand, within MPMX19_06029 at 181.920 kb on + strand, within MPMX19_06029 at 181.920 kb on + strand, within MPMX19_06029 at 181.921 kb on - strand, within MPMX19_06029 at 181.921 kb on - strand, within MPMX19_06029
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 178,893 - -1.1 178,893 - -1.8 178,893 - -1.3 178,893 - -0.3 178,893 - -0.5 178,968 + -0.8 178,968 + -0.5 178,968 + -0.8 178,968 + -1.1 178,968 + -0.2 178,969 - -1.1 178,969 - -0.5 178,969 - -1.3 178,969 - -1.3 178,969 - -1.5 178,969 - -2.2 179,119 - MPMX19_06026 0.27 -1.5 179,551 - -1.7 179,563 + -1.5 179,563 + -0.3 179,564 - +0.8 179,627 + -1.3 179,627 + -1.7 179,627 + +1.5 179,627 + -1.5 179,673 + -1.8 179,674 - -1.3 179,674 - -0.1 179,927 + MPMX19_06027 0.19 -0.3 179,927 + MPMX19_06027 0.19 +0.4 179,927 + MPMX19_06027 0.19 -0.8 179,927 + MPMX19_06027 0.19 -1.1 179,927 + MPMX19_06027 0.19 +1.2 179,928 - MPMX19_06027 0.19 -0.5 179,928 - MPMX19_06027 0.19 +0.2 179,928 - MPMX19_06027 0.19 -0.3 179,928 - MPMX19_06027 0.19 +0.5 179,928 - MPMX19_06027 0.19 -1.3 179,928 - MPMX19_06027 0.19 -1.5 179,928 - MPMX19_06027 0.19 -0.1 179,928 - MPMX19_06027 0.19 -0.1 180,650 - MPMX19_06027 0.78 -1.2 180,923 + +0.9 180,923 + -1.5 181,574 + MPMX19_06028 0.82 -2.9 181,574 + MPMX19_06028 0.82 -0.6 181,575 - MPMX19_06028 0.82 +0.2 181,575 - MPMX19_06028 0.82 +0.5 181,575 - MPMX19_06028 0.82 -1.5 181,586 + MPMX19_06028 0.83 -1.5 181,586 + MPMX19_06028 0.83 -0.8 181,685 + -1.1 181,685 + -1.1 181,685 + +0.5 181,685 + -0.8 181,685 + +0.2 181,686 - -1.0 181,686 - -0.6 181,686 - -1.5 181,686 - -1.3 181,686 - -2.7 181,686 - -1.3 181,686 - +1.5 181,707 + -0.1 181,707 + -0.8 181,707 + -1.5 181,708 - -1.3 181,708 - -0.3 181,708 - +0.9 181,708 - -1.7 181,715 + -1.8 181,715 + -0.5 181,715 + -1.8 181,716 - -2.2 181,716 - -1.9 181,716 - -1.7 181,716 - +1.2 181,716 - -0.9 181,722 + -0.3 181,723 - +0.5 181,723 - +0.3 181,733 + -0.9 181,733 + -0.5 181,733 + -0.5 181,734 - +0.3 181,748 - -1.1 181,810 + -2.1 181,810 + -0.3 181,810 + +0.2 181,810 + -1.1 181,810 + -0.1 181,810 + -0.3 181,810 + +1.5 181,810 + -0.8 181,810 + -0.5 181,810 + -0.8 181,810 + -0.1 181,810 + -0.5 181,810 + -0.5 181,810 + -0.1 181,810 + -2.5 181,810 + -0.1 181,810 + -1.0 181,810 + -0.9 181,810 + +0.5 181,810 + -2.3 181,810 + +0.9 181,810 + -0.2 181,810 + -0.4 181,810 + +0.2 181,810 + +0.9 181,810 + -0.4 181,810 + +0.2 181,810 + -1.3 181,810 + -1.1 181,810 + +0.9 181,810 + +0.9 181,810 + -1.4 181,810 + +0.5 181,810 + -0.5 181,810 + -1.7 181,810 + -0.4 181,810 + -0.3 181,810 + -0.5 181,810 + -1.2 181,810 + -1.8 181,810 + -0.1 181,810 + -1.3 181,810 + -0.5 181,810 + -0.8 181,810 + -1.1 181,810 + -2.5 181,810 + -1.1 181,810 + -1.5 181,810 + -0.2 181,810 + -1.3 181,810 + -0.5 181,810 + -0.3 181,810 + +0.2 181,810 + -0.1 181,810 + -0.1 181,810 + -1.7 181,810 + +0.5 181,810 + -0.8 181,810 + -1.1 181,810 + -0.1 181,810 + +0.0 181,810 + +0.3 181,811 - +1.5 181,811 - +0.5 181,811 - -1.4 181,811 - -0.3 181,811 - +0.8 181,811 - -0.1 181,811 - -0.7 181,811 - -1.0 181,811 - +0.2 181,811 - -1.0 181,811 - +0.5 181,811 - +0.5 181,811 - -1.1 181,811 - -0.8 181,811 - -1.3 181,811 - +0.9 181,811 - -1.1 181,811 - -0.8 181,811 - -0.5 181,811 - +0.5 181,811 - +0.9 181,811 - -1.1 181,811 - -0.8 181,811 - -0.3 181,811 - -0.1 181,811 - -1.3 181,811 - -0.5 181,811 - -1.3 181,811 - -1.7 181,811 - -1.7 181,811 - -1.1 181,811 - -0.7 181,811 - -0.8 181,811 - -0.3 181,811 - +0.5 181,811 - -0.8 181,811 - -1.1 181,811 - -0.8 181,811 - +0.5 181,811 - -1.1 181,811 - -0.3 181,811 - -1.0 181,811 - -1.5 181,811 - +0.0 181,811 - -0.4 181,811 - -0.3 181,811 - -0.5 181,811 - -2.0 181,811 - -0.5 181,811 - -0.8 181,811 - -0.8 181,811 - -0.7 181,811 - +0.6 181,811 - -1.7 181,811 - -1.3 181,811 - -2.2 181,811 - -0.0 181,811 - +0.0 181,811 - -0.1 181,811 - +0.2 181,811 - -0.3 181,811 - -1.1 181,811 - +0.5 181,811 - -1.5 181,811 - -1.5 181,811 - -1.3 181,811 - +0.1 181,811 - -0.5 181,811 - -0.6 181,811 - +0.9 181,811 - -0.6 181,811 - -0.5 181,811 - -1.1 181,811 - -3.0 181,811 - -1.3 181,811 - -0.5 181,811 - +1.5 181,812 + +0.5 181,812 + -1.1 181,812 + +0.9 181,812 + -0.1 181,812 + -0.5 181,812 + -1.1 181,812 + +0.0 181,812 + -2.2 181,812 + -0.8 181,812 + -0.1 181,812 + +0.5 181,812 + -1.0 181,812 + -2.0 181,812 + +0.5 181,812 + -0.1 181,812 + -2.0 181,812 + -0.1 181,812 + -2.3 181,812 + -0.2 181,812 + +0.3 181,812 + +0.1 181,812 + -2.1 181,812 + -1.7 181,812 + -2.3 181,812 + -1.0 181,812 + -1.7 181,812 + -0.5 181,812 + -0.8 181,812 + -0.3 181,812 + -0.1 181,812 + -0.3 181,812 + -0.5 181,813 - -0.1 181,813 - -0.8 181,813 - -0.4 181,813 - -1.3 181,813 - +0.0 181,813 - +0.1 181,813 - -1.4 181,813 - +0.5 181,813 - +0.2 181,813 - +0.5 181,813 - +0.1 181,813 - -0.5 181,813 - -1.1 181,813 - +0.2 181,813 - -0.5 181,813 - +1.3 181,813 - -0.1 181,813 - -0.4 181,813 - -0.8 181,813 - -1.3 181,813 - -1.3 181,813 - -0.2 181,813 - -1.5 181,813 - +0.5 181,813 - +0.5 181,813 - -2.1 181,813 - -1.1 181,813 - -1.8 181,813 - -1.1 181,813 - -0.8 181,813 - -1.1 181,813 - +0.5 181,813 - -0.8 181,813 - -0.1 181,813 - -1.3 181,813 - -0.5 181,813 - -0.8 181,813 - +0.3 181,813 - -1.1 181,816 + +1.5 181,816 + -0.7 181,816 + -2.2 181,816 + -0.8 181,816 + -1.1 181,816 + +0.9 181,816 + -0.4 181,816 + -1.1 181,816 + -0.5 181,816 + -0.1 181,816 + +0.5 181,816 + -0.4 181,816 + -1.3 181,816 + +1.2 181,816 + -1.1 181,816 + -0.1 181,816 + -1.5 181,816 + -0.3 181,816 + -0.8 181,816 + -1.0 181,816 + -1.1 181,816 + -1.3 181,816 + +0.2 181,816 + -0.8 181,816 + +0.0 181,816 + -1.1 181,816 + +0.9 181,816 + -0.1 181,816 + -1.1 181,816 + -1.3 181,816 + +0.0 181,816 + +1.5 181,816 + +0.2 181,816 + -1.1 181,816 + +0.3 181,816 + -0.4 181,816 + -2.4 181,816 + -0.1 181,816 + +0.4 181,816 + -0.8 181,816 + -1.8 181,816 + -0.5 181,816 + -0.8 181,816 + -0.7 181,816 + +1.5 181,816 + -1.1 181,817 - +1.5 181,817 - -0.7 181,817 - -1.1 181,817 - -0.1 181,817 - +0.5 181,817 - -1.1 181,817 - -0.9 181,817 - -0.6 181,817 - +0.8 181,817 - -0.5 181,817 - -0.8 181,817 - -2.0 181,817 - +0.5 181,817 - -0.2 181,817 - +0.3 181,817 - -1.3 181,817 - -0.8 181,817 - -1.3 181,817 - -1.5 181,817 - -0.1 181,817 - +1.5 181,817 - +1.1 181,817 - -0.6 181,817 - -0.7 181,817 - +1.2 181,817 - -0.5 181,817 - -0.5 181,817 - -0.8 181,817 - +0.5 181,817 - +0.5 181,817 - -1.7 181,817 - -1.7 181,817 - -0.5 181,817 - -0.4 181,817 - -0.7 181,817 - -0.3 181,817 - +1.5 181,920 + MPMX19_06029 0.19 -2.5 181,920 + MPMX19_06029 0.19 -0.1 181,920 + MPMX19_06029 0.19 -1.2 181,920 + MPMX19_06029 0.19 -0.7 181,921 - MPMX19_06029 0.19 +0.2 181,921 - MPMX19_06029 0.19 -1.7
Or see this region's nucleotide sequence