Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05757 and MPMX19_05758 are separated by 125 nucleotides MPMX19_05758 and MPMX19_05759 are separated by 699 nucleotides MPMX19_05759 and MPMX19_05760 are separated by 40 nucleotides MPMX19_05760 and MPMX19_05761 are separated by 381 nucleotides
MPMX19_05757: MPMX19_05757 - DNA polymerase III subunit alpha, at 478,552 to 482,043
_05757
MPMX19_05758: MPMX19_05758 - tRNA-Thr, at 482,169 to 482,241
_05758
MPMX19_05759: MPMX19_05759 - hypothetical protein, at 482,941 to 483,900
_05759
MPMX19_05760: MPMX19_05760 - hypothetical protein, at 483,941 to 484,498
_05760
MPMX19_05761: MPMX19_05761 - Ribosomal protein S12 methylthiotransferase RimO, at 484,880 to 486,199
_05761
Position (kb) 482
483
484 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 482.129 kb on + strand at 482.129 kb on + strand at 482.462 kb on + strand at 482.462 kb on + strand at 482.462 kb on + strand at 482.462 kb on + strand at 482.463 kb on - strand at 482.463 kb on - strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.531 kb on + strand at 482.532 kb on - strand at 482.532 kb on - strand at 482.532 kb on - strand at 482.532 kb on - strand at 482.532 kb on - strand at 482.532 kb on - strand at 482.678 kb on + strand at 482.679 kb on - strand at 482.679 kb on - strand at 482.701 kb on + strand at 482.701 kb on + strand at 482.701 kb on + strand at 482.701 kb on + strand at 482.701 kb on + strand at 482.702 kb on - strand at 482.702 kb on - strand at 482.975 kb on + strand at 482.976 kb on - strand at 482.976 kb on - strand at 483.046 kb on + strand, within MPMX19_05759 at 483.046 kb on + strand, within MPMX19_05759 at 483.046 kb on + strand, within MPMX19_05759 at 483.046 kb on + strand, within MPMX19_05759 at 483.047 kb on - strand, within MPMX19_05759 at 483.047 kb on - strand, within MPMX19_05759 at 483.047 kb on - strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.070 kb on + strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.071 kb on - strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.265 kb on + strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.266 kb on - strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.484 kb on + strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.485 kb on - strand, within MPMX19_05759 at 483.628 kb on + strand, within MPMX19_05759 at 483.628 kb on + strand, within MPMX19_05759 at 483.628 kb on + strand, within MPMX19_05759 at 483.629 kb on - strand, within MPMX19_05759 at 483.629 kb on - strand, within MPMX19_05759 at 483.629 kb on - strand, within MPMX19_05759 at 484.005 kb on + strand, within MPMX19_05760 at 484.005 kb on + strand, within MPMX19_05760 at 484.005 kb on + strand, within MPMX19_05760 at 484.005 kb on + strand, within MPMX19_05760 at 484.005 kb on + strand, within MPMX19_05760 at 484.005 kb on + strand, within MPMX19_05760 at 484.005 kb on + strand, within MPMX19_05760 at 484.006 kb on - strand, within MPMX19_05760 at 484.006 kb on - strand, within MPMX19_05760 at 484.006 kb on - strand, within MPMX19_05760 at 484.006 kb on - strand, within MPMX19_05760 at 484.006 kb on - strand, within MPMX19_05760 at 484.006 kb on - strand, within MPMX19_05760 at 484.006 kb on - strand, within MPMX19_05760 at 484.254 kb on + strand, within MPMX19_05760 at 484.255 kb on - strand, within MPMX19_05760 at 484.255 kb on - strand, within MPMX19_05760 at 484.255 kb on - strand, within MPMX19_05760 at 484.294 kb on + strand, within MPMX19_05760 at 484.294 kb on + strand, within MPMX19_05760 at 484.294 kb on + strand, within MPMX19_05760 at 484.294 kb on + strand, within MPMX19_05760 at 484.294 kb on + strand, within MPMX19_05760 at 484.295 kb on - strand, within MPMX19_05760 at 484.295 kb on - strand, within MPMX19_05760 at 484.295 kb on - strand, within MPMX19_05760 at 484.295 kb on - strand, within MPMX19_05760 at 484.295 kb on - strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.296 kb on + strand, within MPMX19_05760 at 484.297 kb on - strand, within MPMX19_05760 at 484.297 kb on - strand, within MPMX19_05760 at 484.297 kb on - strand, within MPMX19_05760 at 484.510 kb on + strand at 484.510 kb on + strand at 484.510 kb on + strand at 484.510 kb on + strand at 484.511 kb on - strand at 484.511 kb on - strand at 484.511 kb on - strand at 484.511 kb on - strand at 484.511 kb on - strand at 484.511 kb on - strand at 484.511 kb on - strand at 484.513 kb on - strand at 484.519 kb on + strand at 484.520 kb on - strand at 484.526 kb on + strand at 484.526 kb on + strand at 484.528 kb on + strand at 484.529 kb on - strand at 484.529 kb on - strand at 484.565 kb on + strand at 484.565 kb on + strand at 484.565 kb on + strand at 484.588 kb on + strand at 484.588 kb on + strand at 484.589 kb on - strand at 484.589 kb on - strand at 484.599 kb on + strand at 484.599 kb on + strand at 484.599 kb on + strand at 484.600 kb on - strand at 484.600 kb on - strand at 484.600 kb on - strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.603 kb on + strand at 484.604 kb on - strand at 484.604 kb on - strand at 484.604 kb on - strand at 484.604 kb on - strand at 484.604 kb on - strand at 484.604 kb on - strand at 484.606 kb on + strand at 484.607 kb on - strand at 484.607 kb on - strand at 484.607 kb on - strand at 484.607 kb on - strand at 484.607 kb on - strand at 484.607 kb on - strand at 484.607 kb on - strand at 484.776 kb on + strand at 484.777 kb on - strand at 484.799 kb on + strand at 484.817 kb on + strand at 484.820 kb on - strand at 484.820 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 482,129 + +0.5 482,129 + -1.1 482,462 + +0.5 482,462 + +0.9 482,462 + -0.2 482,462 + -0.8 482,463 - -0.6 482,463 - -0.1 482,531 + -1.5 482,531 + -0.5 482,531 + -1.1 482,531 + -0.8 482,531 + -1.3 482,531 + -1.5 482,531 + +0.2 482,531 + +1.5 482,531 + +0.4 482,531 + +1.8 482,531 + +0.5 482,531 + -0.2 482,532 - -1.1 482,532 - -1.3 482,532 - -0.4 482,532 - -0.5 482,532 - +0.9 482,532 - -0.5 482,678 + -0.6 482,679 - -1.1 482,679 - -0.4 482,701 + -0.5 482,701 + +0.5 482,701 + +1.5 482,701 + -0.5 482,701 + -0.1 482,702 - -0.2 482,702 - -0.8 482,975 + +0.1 482,976 - -1.6 482,976 - +1.2 483,046 + MPMX19_05759 0.11 -0.1 483,046 + MPMX19_05759 0.11 -0.1 483,046 + MPMX19_05759 0.11 -1.7 483,046 + MPMX19_05759 0.11 -0.5 483,047 - MPMX19_05759 0.11 -0.5 483,047 - MPMX19_05759 0.11 +0.5 483,047 - MPMX19_05759 0.11 -0.1 483,070 + MPMX19_05759 0.13 -0.8 483,070 + MPMX19_05759 0.13 -1.5 483,070 + MPMX19_05759 0.13 +0.1 483,070 + MPMX19_05759 0.13 -0.5 483,070 + MPMX19_05759 0.13 -0.2 483,070 + MPMX19_05759 0.13 +2.1 483,070 + MPMX19_05759 0.13 -1.5 483,070 + MPMX19_05759 0.13 +0.1 483,070 + MPMX19_05759 0.13 -1.1 483,070 + MPMX19_05759 0.13 -0.1 483,070 + MPMX19_05759 0.13 -0.3 483,070 + MPMX19_05759 0.13 +0.9 483,070 + MPMX19_05759 0.13 -1.3 483,070 + MPMX19_05759 0.13 -1.6 483,070 + MPMX19_05759 0.13 -2.2 483,070 + MPMX19_05759 0.13 +1.0 483,070 + MPMX19_05759 0.13 +0.8 483,070 + MPMX19_05759 0.13 -0.1 483,070 + MPMX19_05759 0.13 +0.5 483,071 - MPMX19_05759 0.14 -0.1 483,071 - MPMX19_05759 0.14 -0.9 483,071 - MPMX19_05759 0.14 -0.1 483,071 - MPMX19_05759 0.14 +0.5 483,071 - MPMX19_05759 0.14 -0.5 483,071 - MPMX19_05759 0.14 -0.7 483,071 - MPMX19_05759 0.14 +0.8 483,071 - MPMX19_05759 0.14 -0.6 483,071 - MPMX19_05759 0.14 +0.5 483,071 - MPMX19_05759 0.14 -1.5 483,071 - MPMX19_05759 0.14 -0.8 483,265 + MPMX19_05759 0.34 -0.5 483,265 + MPMX19_05759 0.34 +0.4 483,265 + MPMX19_05759 0.34 -0.3 483,265 + MPMX19_05759 0.34 -1.2 483,265 + MPMX19_05759 0.34 -1.6 483,265 + MPMX19_05759 0.34 -0.3 483,265 + MPMX19_05759 0.34 -1.3 483,265 + MPMX19_05759 0.34 -1.1 483,265 + MPMX19_05759 0.34 -2.3 483,265 + MPMX19_05759 0.34 -2.3 483,265 + MPMX19_05759 0.34 +1.1 483,265 + MPMX19_05759 0.34 +1.0 483,265 + MPMX19_05759 0.34 -1.6 483,265 + MPMX19_05759 0.34 +0.8 483,265 + MPMX19_05759 0.34 -1.1 483,265 + MPMX19_05759 0.34 -0.8 483,265 + MPMX19_05759 0.34 -0.5 483,265 + MPMX19_05759 0.34 -0.8 483,265 + MPMX19_05759 0.34 +0.5 483,265 + MPMX19_05759 0.34 -0.5 483,265 + MPMX19_05759 0.34 +0.5 483,266 - MPMX19_05759 0.34 +1.0 483,266 - MPMX19_05759 0.34 -0.1 483,266 - MPMX19_05759 0.34 -0.8 483,266 - MPMX19_05759 0.34 -0.1 483,266 - MPMX19_05759 0.34 -0.3 483,266 - MPMX19_05759 0.34 -1.9 483,266 - MPMX19_05759 0.34 -1.7 483,266 - MPMX19_05759 0.34 -0.1 483,266 - MPMX19_05759 0.34 +0.2 483,266 - MPMX19_05759 0.34 +1.5 483,266 - MPMX19_05759 0.34 +0.1 483,266 - MPMX19_05759 0.34 -0.4 483,266 - MPMX19_05759 0.34 -0.1 483,266 - MPMX19_05759 0.34 +0.0 483,266 - MPMX19_05759 0.34 -0.1 483,484 + MPMX19_05759 0.57 -0.6 483,484 + MPMX19_05759 0.57 -1.5 483,484 + MPMX19_05759 0.57 -0.9 483,484 + MPMX19_05759 0.57 +0.5 483,484 + MPMX19_05759 0.57 -2.9 483,484 + MPMX19_05759 0.57 +0.8 483,484 + MPMX19_05759 0.57 +1.5 483,484 + MPMX19_05759 0.57 +0.3 483,484 + MPMX19_05759 0.57 +1.0 483,484 + MPMX19_05759 0.57 +0.7 483,484 + MPMX19_05759 0.57 -0.1 483,484 + MPMX19_05759 0.57 -2.1 483,485 - MPMX19_05759 0.57 -2.2 483,485 - MPMX19_05759 0.57 +0.5 483,485 - MPMX19_05759 0.57 -0.8 483,485 - MPMX19_05759 0.57 +0.9 483,485 - MPMX19_05759 0.57 +1.5 483,485 - MPMX19_05759 0.57 -0.8 483,485 - MPMX19_05759 0.57 -1.5 483,485 - MPMX19_05759 0.57 -0.5 483,485 - MPMX19_05759 0.57 -0.6 483,485 - MPMX19_05759 0.57 -0.3 483,485 - MPMX19_05759 0.57 +0.1 483,485 - MPMX19_05759 0.57 -1.5 483,485 - MPMX19_05759 0.57 +1.3 483,628 + MPMX19_05759 0.72 +0.8 483,628 + MPMX19_05759 0.72 -0.2 483,628 + MPMX19_05759 0.72 -0.8 483,629 - MPMX19_05759 0.72 +0.5 483,629 - MPMX19_05759 0.72 -1.0 483,629 - MPMX19_05759 0.72 +1.3 484,005 + MPMX19_05760 0.11 -0.6 484,005 + MPMX19_05760 0.11 +0.5 484,005 + MPMX19_05760 0.11 -0.9 484,005 + MPMX19_05760 0.11 -0.7 484,005 + MPMX19_05760 0.11 -0.4 484,005 + MPMX19_05760 0.11 +0.7 484,005 + MPMX19_05760 0.11 +0.7 484,006 - MPMX19_05760 0.12 +1.1 484,006 - MPMX19_05760 0.12 -1.5 484,006 - MPMX19_05760 0.12 -2.1 484,006 - MPMX19_05760 0.12 -0.1 484,006 - MPMX19_05760 0.12 +0.9 484,006 - MPMX19_05760 0.12 +1.5 484,006 - MPMX19_05760 0.12 -1.8 484,254 + MPMX19_05760 0.56 -0.8 484,255 - MPMX19_05760 0.56 -1.5 484,255 - MPMX19_05760 0.56 -2.2 484,255 - MPMX19_05760 0.56 -1.3 484,294 + MPMX19_05760 0.63 -1.8 484,294 + MPMX19_05760 0.63 +0.9 484,294 + MPMX19_05760 0.63 +0.5 484,294 + MPMX19_05760 0.63 -0.5 484,294 + MPMX19_05760 0.63 -0.8 484,295 - MPMX19_05760 0.63 -1.5 484,295 - MPMX19_05760 0.63 -0.1 484,295 - MPMX19_05760 0.63 +0.9 484,295 - MPMX19_05760 0.63 -0.5 484,295 - MPMX19_05760 0.63 +0.1 484,296 + MPMX19_05760 0.64 -0.8 484,296 + MPMX19_05760 0.64 -1.3 484,296 + MPMX19_05760 0.64 -0.1 484,296 + MPMX19_05760 0.64 -0.8 484,296 + MPMX19_05760 0.64 -2.2 484,296 + MPMX19_05760 0.64 -0.5 484,296 + MPMX19_05760 0.64 -1.2 484,296 + MPMX19_05760 0.64 -1.2 484,296 + MPMX19_05760 0.64 -0.4 484,296 + MPMX19_05760 0.64 -2.2 484,297 - MPMX19_05760 0.64 -1.8 484,297 - MPMX19_05760 0.64 +0.2 484,297 - MPMX19_05760 0.64 -0.3 484,510 + -1.1 484,510 + -0.8 484,510 + -0.7 484,510 + +0.2 484,511 - +0.4 484,511 - -1.5 484,511 - -1.1 484,511 - -0.8 484,511 - +0.1 484,511 - -0.6 484,511 - -0.5 484,513 - +0.2 484,519 + -1.4 484,520 - -1.1 484,526 + -2.1 484,526 + +0.2 484,528 + -0.4 484,529 - -0.5 484,529 - -0.6 484,565 + -0.1 484,565 + -1.1 484,565 + -0.6 484,588 + -1.3 484,588 + -0.5 484,589 - +0.1 484,589 - -1.9 484,599 + -0.7 484,599 + +0.3 484,599 + -0.9 484,600 - -2.1 484,600 - -0.5 484,600 - -0.2 484,603 + -0.8 484,603 + -0.3 484,603 + -0.5 484,603 + -0.5 484,603 + -0.1 484,603 + +0.5 484,603 + -0.6 484,603 + -0.2 484,603 + -0.6 484,603 + -2.5 484,603 + -1.1 484,604 - -0.9 484,604 - -1.3 484,604 - -2.6 484,604 - -0.5 484,604 - -0.5 484,604 - -1.3 484,606 + -0.9 484,607 - -1.3 484,607 - -0.5 484,607 - -1.1 484,607 - -0.1 484,607 - -1.3 484,607 - -1.2 484,607 - -1.2 484,776 + -1.6 484,777 - +1.5 484,799 + -0.8 484,817 + +1.9 484,820 - -0.3 484,820 - +0.1
Or see this region's nucleotide sequence