Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05725 and MPMX19_05726 are separated by 13 nucleotides MPMX19_05726 and MPMX19_05727 are separated by 103 nucleotides MPMX19_05727 and MPMX19_05728 are separated by 15 nucleotides MPMX19_05728 and MPMX19_05729 are separated by 25 nucleotides
MPMX19_05725: MPMX19_05725 - hypothetical protein, at 443,522 to 444,949
_05725
MPMX19_05726: MPMX19_05726 - hypothetical protein, at 444,963 to 445,739
_05726
MPMX19_05727: MPMX19_05727 - Phosphoribosylaminoimidazole-succinocarboxamide synthase, at 445,843 to 446,823
_05727
MPMX19_05728: MPMX19_05728 - Glyoxylate/hydroxypyruvate reductase B, at 446,839 to 447,792
_05728
MPMX19_05729: MPMX19_05729 - hypothetical protein, at 447,818 to 448,570
_05729
Position (kb) 445
446
447 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 445.457 kb on - strand, within MPMX19_05726 at 445.457 kb on - strand, within MPMX19_05726 at 445.457 kb on - strand, within MPMX19_05726 at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.760 kb on + strand at 445.760 kb on + strand at 445.761 kb on - strand at 445.761 kb on - strand at 445.761 kb on - strand at 445.761 kb on - strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.766 kb on - strand at 445.766 kb on - strand at 445.766 kb on - strand at 445.795 kb on + strand at 445.946 kb on - strand, within MPMX19_05727 at 445.946 kb on - strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.176 kb on + strand, within MPMX19_05727 at 446.177 kb on - strand, within MPMX19_05727 at 446.177 kb on - strand, within MPMX19_05727 at 446.177 kb on - strand, within MPMX19_05727 at 446.177 kb on - strand, within MPMX19_05727 at 446.177 kb on - strand, within MPMX19_05727 at 446.177 kb on - strand, within MPMX19_05727 at 446.177 kb on - strand, within MPMX19_05727 at 446.178 kb on + strand, within MPMX19_05727 at 446.178 kb on + strand, within MPMX19_05727 at 446.178 kb on + strand, within MPMX19_05727 at 446.178 kb on + strand, within MPMX19_05727 at 446.179 kb on - strand, within MPMX19_05727 at 446.179 kb on - strand, within MPMX19_05727 at 446.215 kb on + strand, within MPMX19_05727 at 446.215 kb on + strand, within MPMX19_05727 at 446.215 kb on + strand, within MPMX19_05727 at 446.215 kb on + strand, within MPMX19_05727 at 446.215 kb on + strand, within MPMX19_05727 at 446.216 kb on - strand, within MPMX19_05727 at 446.216 kb on - strand, within MPMX19_05727 at 446.216 kb on - strand, within MPMX19_05727 at 446.216 kb on - strand, within MPMX19_05727 at 446.216 kb on - strand, within MPMX19_05727 at 446.216 kb on - strand, within MPMX19_05727 at 446.216 kb on - strand, within MPMX19_05727 at 446.239 kb on + strand, within MPMX19_05727 at 446.239 kb on + strand, within MPMX19_05727 at 446.239 kb on + strand, within MPMX19_05727 at 446.239 kb on + strand, within MPMX19_05727 at 446.239 kb on + strand, within MPMX19_05727 at 446.239 kb on + strand, within MPMX19_05727 at 446.239 kb on + strand, within MPMX19_05727 at 446.240 kb on - strand, within MPMX19_05727 at 446.240 kb on - strand, within MPMX19_05727 at 446.479 kb on + strand, within MPMX19_05727 at 446.479 kb on + strand, within MPMX19_05727 at 446.479 kb on + strand, within MPMX19_05727 at 446.480 kb on - strand, within MPMX19_05727 at 446.480 kb on - strand, within MPMX19_05727 at 446.551 kb on + strand, within MPMX19_05727 at 446.569 kb on + strand, within MPMX19_05727 at 446.569 kb on + strand, within MPMX19_05727 at 446.570 kb on - strand, within MPMX19_05727 at 446.570 kb on - strand, within MPMX19_05727 at 446.713 kb on + strand, within MPMX19_05727 at 446.713 kb on + strand, within MPMX19_05727 at 446.714 kb on - strand, within MPMX19_05727 at 446.809 kb on + strand at 446.809 kb on + strand at 446.809 kb on + strand at 446.809 kb on + strand at 446.809 kb on + strand at 446.810 kb on - strand at 446.810 kb on - strand at 446.810 kb on - strand at 446.810 kb on - strand at 446.810 kb on - strand at 446.810 kb on - strand at 446.810 kb on - strand at 446.810 kb on - strand at 446.821 kb on + strand at 446.821 kb on + strand at 446.821 kb on + strand at 446.821 kb on + strand at 446.821 kb on + strand at 446.821 kb on + strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.822 kb on - strand at 446.863 kb on + strand at 446.863 kb on + strand at 446.863 kb on + strand at 446.864 kb on - strand at 446.864 kb on - strand at 447.692 kb on - strand, within MPMX19_05728 at 447.709 kb on + strand at 447.709 kb on + strand at 447.710 kb on - strand at 447.721 kb on + strand at 447.721 kb on + strand at 447.721 kb on + strand at 447.721 kb on + strand at 447.722 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 444,952 + -0.8 444,952 + -0.5 444,952 + -0.3 444,952 + +1.3 444,952 + +0.2 444,952 + -0.5 444,952 + +1.1 444,952 + +0.5 444,952 + -1.9 444,952 + -0.5 444,953 - -0.5 444,953 - +0.5 444,953 - +1.8 444,953 - -0.3 444,953 - -0.5 444,953 - -0.5 444,953 - -1.5 445,457 - MPMX19_05726 0.64 +0.1 445,457 - MPMX19_05726 0.64 +0.4 445,457 - MPMX19_05726 0.64 -0.9 445,678 + -0.3 445,678 + -1.1 445,678 + +0.5 445,678 + +0.3 445,678 + +1.4 445,678 + +0.2 445,678 + +0.5 445,678 + +0.3 445,678 + -1.6 445,678 + +1.5 445,678 + -1.1 445,678 + -0.6 445,678 + +0.1 445,679 - -1.7 445,679 - -1.8 445,679 - -1.1 445,679 - -0.3 445,679 - -1.9 445,679 - -0.5 445,679 - -1.1 445,679 - -0.1 445,679 - -1.2 445,679 - -0.5 445,679 - -1.6 445,679 - -0.5 445,679 - -1.1 445,760 + -0.1 445,760 + -0.8 445,761 - +0.7 445,761 - +0.5 445,761 - -0.8 445,761 - +0.5 445,765 + -0.8 445,765 + -0.1 445,765 + -1.3 445,765 + -1.5 445,765 + -1.3 445,765 + +0.5 445,766 - +3.1 445,766 - +0.1 445,766 - +0.5 445,795 + +0.9 445,946 - MPMX19_05727 0.10 +1.5 445,946 - MPMX19_05727 0.10 +0.5 446,176 + MPMX19_05727 0.34 +2.5 446,176 + MPMX19_05727 0.34 -0.5 446,176 + MPMX19_05727 0.34 +1.1 446,176 + MPMX19_05727 0.34 +3.2 446,176 + MPMX19_05727 0.34 +0.9 446,176 + MPMX19_05727 0.34 +1.5 446,176 + MPMX19_05727 0.34 +1.5 446,176 + MPMX19_05727 0.34 +2.1 446,176 + MPMX19_05727 0.34 +1.5 446,176 + MPMX19_05727 0.34 +1.5 446,177 - MPMX19_05727 0.34 +2.1 446,177 - MPMX19_05727 0.34 +0.8 446,177 - MPMX19_05727 0.34 +0.2 446,177 - MPMX19_05727 0.34 +0.3 446,177 - MPMX19_05727 0.34 +1.5 446,177 - MPMX19_05727 0.34 +0.5 446,177 - MPMX19_05727 0.34 +0.5 446,178 + MPMX19_05727 0.34 +1.5 446,178 + MPMX19_05727 0.34 +1.5 446,178 + MPMX19_05727 0.34 +2.3 446,178 + MPMX19_05727 0.34 +2.7 446,179 - MPMX19_05727 0.34 +0.1 446,179 - MPMX19_05727 0.34 +1.3 446,215 + MPMX19_05727 0.38 +2.4 446,215 + MPMX19_05727 0.38 +2.4 446,215 + MPMX19_05727 0.38 -0.5 446,215 + MPMX19_05727 0.38 +1.7 446,215 + MPMX19_05727 0.38 -0.1 446,216 - MPMX19_05727 0.38 +1.5 446,216 - MPMX19_05727 0.38 +2.4 446,216 - MPMX19_05727 0.38 +2.1 446,216 - MPMX19_05727 0.38 +1.2 446,216 - MPMX19_05727 0.38 +3.5 446,216 - MPMX19_05727 0.38 +0.9 446,216 - MPMX19_05727 0.38 +1.2 446,239 + MPMX19_05727 0.40 +1.5 446,239 + MPMX19_05727 0.40 +3.1 446,239 + MPMX19_05727 0.40 +2.5 446,239 + MPMX19_05727 0.40 +1.5 446,239 + MPMX19_05727 0.40 -0.3 446,239 + MPMX19_05727 0.40 +2.1 446,239 + MPMX19_05727 0.40 +0.5 446,240 - MPMX19_05727 0.40 +0.2 446,240 - MPMX19_05727 0.40 +1.8 446,479 + MPMX19_05727 0.65 +3.7 446,479 + MPMX19_05727 0.65 +0.9 446,479 + MPMX19_05727 0.65 +0.9 446,480 - MPMX19_05727 0.65 +0.8 446,480 - MPMX19_05727 0.65 +1.5 446,551 + MPMX19_05727 0.72 +1.5 446,569 + MPMX19_05727 0.74 +2.9 446,569 + MPMX19_05727 0.74 +2.9 446,570 - MPMX19_05727 0.74 +0.7 446,570 - MPMX19_05727 0.74 +1.2 446,713 + MPMX19_05727 0.89 +1.8 446,713 + MPMX19_05727 0.89 +2.1 446,714 - MPMX19_05727 0.89 +0.9 446,809 + -0.8 446,809 + -1.6 446,809 + -0.8 446,809 + -1.3 446,809 + -0.8 446,810 - +0.7 446,810 - -0.1 446,810 - +0.4 446,810 - +1.3 446,810 - -0.3 446,810 - -0.7 446,810 - -0.5 446,810 - +0.5 446,821 + -1.1 446,821 + -0.1 446,821 + -0.1 446,821 + -0.6 446,821 + +0.3 446,821 + +0.2 446,822 - +0.3 446,822 - -0.5 446,822 - +2.8 446,822 - -3.0 446,822 - +0.7 446,822 - -1.1 446,822 - -1.1 446,822 - +0.1 446,822 - -0.8 446,822 - +0.5 446,822 - -0.8 446,822 - +0.7 446,822 - +0.5 446,863 + -0.5 446,863 + -0.2 446,863 + -0.8 446,864 - -0.1 446,864 - -0.3 447,692 - MPMX19_05728 0.89 -0.1 447,709 + +1.2 447,709 + -0.8 447,710 - -1.6 447,721 + -0.5 447,721 + +0.4 447,721 + -0.9 447,721 + +1.5 447,722 - +1.5
Or see this region's nucleotide sequence