Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05724 and MPMX19_05725 are separated by 306 nucleotides MPMX19_05725 and MPMX19_05726 are separated by 13 nucleotides MPMX19_05726 and MPMX19_05727 are separated by 103 nucleotides
MPMX19_05724: MPMX19_05724 - Undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase, at 442,493 to 443,215
_05724
MPMX19_05725: MPMX19_05725 - hypothetical protein, at 443,522 to 444,949
_05725
MPMX19_05726: MPMX19_05726 - hypothetical protein, at 444,963 to 445,739
_05726
MPMX19_05727: MPMX19_05727 - Phosphoribosylaminoimidazole-succinocarboxamide synthase, at 445,843 to 446,823
_05727
Position (kb) 443
444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 442.821 kb on + strand, within MPMX19_05724 at 443.011 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.012 kb on + strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.013 kb on - strand, within MPMX19_05724 at 443.015 kb on + strand, within MPMX19_05724 at 443.015 kb on + strand, within MPMX19_05724 at 443.015 kb on + strand, within MPMX19_05724 at 443.015 kb on + strand, within MPMX19_05724 at 443.015 kb on + strand, within MPMX19_05724 at 443.015 kb on + strand, within MPMX19_05724 at 443.015 kb on + strand, within MPMX19_05724 at 443.015 kb on + strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.016 kb on - strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.036 kb on + strand, within MPMX19_05724 at 443.037 kb on - strand, within MPMX19_05724 at 443.037 kb on - strand, within MPMX19_05724 at 443.037 kb on - strand, within MPMX19_05724 at 443.037 kb on - strand, within MPMX19_05724 at 443.037 kb on - strand, within MPMX19_05724 at 443.037 kb on - strand, within MPMX19_05724 at 443.037 kb on - strand, within MPMX19_05724 at 443.099 kb on + strand, within MPMX19_05724 at 443.099 kb on + strand, within MPMX19_05724 at 443.100 kb on - strand, within MPMX19_05724 at 443.100 kb on - strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.129 kb on + strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.130 kb on - strand, within MPMX19_05724 at 443.210 kb on + strand at 443.210 kb on + strand at 443.211 kb on - strand at 443.211 kb on - strand at 443.211 kb on - strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.334 kb on + strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.335 kb on - strand at 443.434 kb on + strand at 443.434 kb on + strand at 443.434 kb on + strand at 443.435 kb on - strand at 443.435 kb on - strand at 443.435 kb on - strand at 443.435 kb on - strand at 443.435 kb on - strand at 443.435 kb on - strand at 443.435 kb on - strand at 443.435 kb on - strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.463 kb on + strand at 443.464 kb on - strand at 443.464 kb on - strand at 443.464 kb on - strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.465 kb on + strand at 443.466 kb on - strand at 443.466 kb on - strand at 443.466 kb on - strand at 443.466 kb on - strand at 443.466 kb on - strand at 443.466 kb on - strand at 443.633 kb on - strand at 443.687 kb on + strand, within MPMX19_05725 at 443.687 kb on + strand, within MPMX19_05725 at 443.687 kb on + strand, within MPMX19_05725 at 443.687 kb on + strand, within MPMX19_05725 at 443.688 kb on - strand, within MPMX19_05725 at 443.688 kb on - strand, within MPMX19_05725 at 443.688 kb on - strand, within MPMX19_05725 at 443.688 kb on - strand, within MPMX19_05725 at 443.871 kb on - strand, within MPMX19_05725 at 443.903 kb on + strand, within MPMX19_05725 at 444.242 kb on + strand, within MPMX19_05725 at 444.242 kb on + strand, within MPMX19_05725 at 444.242 kb on + strand, within MPMX19_05725 at 444.603 kb on - strand, within MPMX19_05725 at 444.674 kb on + strand, within MPMX19_05725 at 444.675 kb on - strand, within MPMX19_05725 at 444.678 kb on - strand, within MPMX19_05725 at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.952 kb on + strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 444.953 kb on - strand at 445.457 kb on - strand, within MPMX19_05726 at 445.457 kb on - strand, within MPMX19_05726 at 445.457 kb on - strand, within MPMX19_05726 at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.678 kb on + strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.679 kb on - strand at 445.760 kb on + strand at 445.760 kb on + strand at 445.761 kb on - strand at 445.761 kb on - strand at 445.761 kb on - strand at 445.761 kb on - strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.765 kb on + strand at 445.766 kb on - strand at 445.766 kb on - strand at 445.766 kb on - strand at 445.795 kb on + strand at 445.946 kb on - strand, within MPMX19_05727 at 445.946 kb on - strand, within MPMX19_05727
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 442,821 + MPMX19_05724 0.45 -0.5 443,011 + MPMX19_05724 0.72 +0.2 443,012 + MPMX19_05724 0.72 -1.9 443,012 + MPMX19_05724 0.72 -0.8 443,012 + MPMX19_05724 0.72 +1.9 443,012 + MPMX19_05724 0.72 -0.8 443,012 + MPMX19_05724 0.72 -0.9 443,012 + MPMX19_05724 0.72 -2.5 443,012 + MPMX19_05724 0.72 -0.3 443,012 + MPMX19_05724 0.72 +0.1 443,012 + MPMX19_05724 0.72 -1.6 443,012 + MPMX19_05724 0.72 -1.1 443,012 + MPMX19_05724 0.72 -0.8 443,012 + MPMX19_05724 0.72 -0.1 443,012 + MPMX19_05724 0.72 -0.6 443,013 - MPMX19_05724 0.72 -1.8 443,013 - MPMX19_05724 0.72 -0.9 443,013 - MPMX19_05724 0.72 -0.8 443,013 - MPMX19_05724 0.72 +2.3 443,013 - MPMX19_05724 0.72 -2.5 443,013 - MPMX19_05724 0.72 -1.1 443,013 - MPMX19_05724 0.72 -1.1 443,013 - MPMX19_05724 0.72 +0.8 443,013 - MPMX19_05724 0.72 -0.2 443,013 - MPMX19_05724 0.72 -1.6 443,013 - MPMX19_05724 0.72 -1.3 443,013 - MPMX19_05724 0.72 -0.9 443,013 - MPMX19_05724 0.72 -0.1 443,013 - MPMX19_05724 0.72 -0.1 443,013 - MPMX19_05724 0.72 -1.3 443,013 - MPMX19_05724 0.72 -1.6 443,013 - MPMX19_05724 0.72 -0.5 443,015 + MPMX19_05724 0.72 -0.8 443,015 + MPMX19_05724 0.72 -0.1 443,015 + MPMX19_05724 0.72 -0.1 443,015 + MPMX19_05724 0.72 -1.1 443,015 + MPMX19_05724 0.72 -0.9 443,015 + MPMX19_05724 0.72 +0.5 443,015 + MPMX19_05724 0.72 -1.9 443,015 + MPMX19_05724 0.72 -0.5 443,016 - MPMX19_05724 0.72 +0.9 443,016 - MPMX19_05724 0.72 -1.2 443,016 - MPMX19_05724 0.72 -0.8 443,016 - MPMX19_05724 0.72 -0.8 443,016 - MPMX19_05724 0.72 +0.8 443,016 - MPMX19_05724 0.72 +0.9 443,016 - MPMX19_05724 0.72 -0.8 443,016 - MPMX19_05724 0.72 -0.0 443,016 - MPMX19_05724 0.72 -0.8 443,016 - MPMX19_05724 0.72 -1.5 443,016 - MPMX19_05724 0.72 +0.9 443,016 - MPMX19_05724 0.72 -1.3 443,036 + MPMX19_05724 0.75 +0.9 443,036 + MPMX19_05724 0.75 -0.5 443,036 + MPMX19_05724 0.75 +0.5 443,036 + MPMX19_05724 0.75 -0.5 443,036 + MPMX19_05724 0.75 +0.5 443,036 + MPMX19_05724 0.75 -3.1 443,036 + MPMX19_05724 0.75 -1.3 443,036 + MPMX19_05724 0.75 +0.5 443,036 + MPMX19_05724 0.75 -0.6 443,036 + MPMX19_05724 0.75 -0.5 443,036 + MPMX19_05724 0.75 -1.6 443,036 + MPMX19_05724 0.75 -0.6 443,037 - MPMX19_05724 0.75 -0.5 443,037 - MPMX19_05724 0.75 -1.3 443,037 - MPMX19_05724 0.75 -1.1 443,037 - MPMX19_05724 0.75 -0.7 443,037 - MPMX19_05724 0.75 +0.4 443,037 - MPMX19_05724 0.75 -0.8 443,037 - MPMX19_05724 0.75 -0.5 443,099 + MPMX19_05724 0.84 +0.2 443,099 + MPMX19_05724 0.84 -0.3 443,100 - MPMX19_05724 0.84 +1.2 443,100 - MPMX19_05724 0.84 +1.5 443,129 + MPMX19_05724 0.88 -1.3 443,129 + MPMX19_05724 0.88 -0.3 443,129 + MPMX19_05724 0.88 +2.1 443,129 + MPMX19_05724 0.88 +1.5 443,129 + MPMX19_05724 0.88 +2.1 443,129 + MPMX19_05724 0.88 +0.2 443,129 + MPMX19_05724 0.88 -1.7 443,129 + MPMX19_05724 0.88 -0.1 443,129 + MPMX19_05724 0.88 -1.6 443,129 + MPMX19_05724 0.88 +1.2 443,129 + MPMX19_05724 0.88 -2.6 443,129 + MPMX19_05724 0.88 +1.5 443,129 + MPMX19_05724 0.88 +0.2 443,129 + MPMX19_05724 0.88 +0.4 443,129 + MPMX19_05724 0.88 -0.8 443,130 - MPMX19_05724 0.88 +0.2 443,130 - MPMX19_05724 0.88 +0.5 443,130 - MPMX19_05724 0.88 -1.3 443,130 - MPMX19_05724 0.88 -0.1 443,130 - MPMX19_05724 0.88 +0.5 443,130 - MPMX19_05724 0.88 -0.1 443,130 - MPMX19_05724 0.88 -1.2 443,130 - MPMX19_05724 0.88 -0.6 443,130 - MPMX19_05724 0.88 -0.5 443,130 - MPMX19_05724 0.88 -0.2 443,130 - MPMX19_05724 0.88 -0.8 443,130 - MPMX19_05724 0.88 -1.1 443,130 - MPMX19_05724 0.88 -1.3 443,210 + +0.2 443,210 + -0.7 443,211 - -0.7 443,211 - +0.8 443,211 - -1.1 443,334 + -1.1 443,334 + +0.5 443,334 + +0.3 443,334 + -0.1 443,334 + -1.5 443,334 + +0.3 443,334 + +0.8 443,334 + -0.1 443,334 + +0.9 443,334 + -0.6 443,334 + -0.1 443,334 + -1.3 443,334 + -1.1 443,334 + -0.5 443,334 + -1.1 443,334 + +0.6 443,334 + +0.1 443,334 + +0.2 443,334 + -1.5 443,334 + +0.1 443,334 + +0.5 443,334 + +0.1 443,335 - -0.3 443,335 - -1.5 443,335 - -1.1 443,335 - -0.5 443,335 - +0.2 443,335 - -1.3 443,335 - +0.2 443,335 - -1.1 443,335 - -0.5 443,335 - -0.1 443,335 - +2.3 443,335 - -0.1 443,335 - -0.8 443,335 - -1.5 443,335 - +0.8 443,335 - -0.9 443,335 - -0.8 443,335 - -1.8 443,335 - +0.5 443,335 - -0.7 443,335 - +1.5 443,335 - -1.1 443,335 - +0.5 443,335 - -0.1 443,335 - +1.3 443,335 - -0.7 443,335 - -1.5 443,335 - +0.7 443,434 + +1.9 443,434 + -1.3 443,434 + -0.1 443,435 - -1.6 443,435 - -0.8 443,435 - +0.9 443,435 - +0.8 443,435 - +1.1 443,435 - -0.6 443,435 - +1.9 443,435 - -2.4 443,463 + -0.6 443,463 + -1.3 443,463 + -1.5 443,463 + -1.5 443,463 + +0.8 443,463 + +0.5 443,463 + +0.2 443,463 + -0.3 443,463 + -0.5 443,463 + -0.1 443,463 + +1.8 443,463 + -1.3 443,463 + +0.5 443,463 + +1.9 443,463 + +0.5 443,463 + -1.1 443,463 + +0.0 443,464 - -1.6 443,464 - -0.8 443,464 - -2.2 443,465 + +1.5 443,465 + -0.1 443,465 + -0.1 443,465 + -1.3 443,465 + -0.5 443,465 + -0.5 443,465 + -0.8 443,465 + -0.1 443,465 + -0.4 443,465 + -0.1 443,465 + -0.5 443,466 - -1.6 443,466 - -0.1 443,466 - -2.2 443,466 - -0.3 443,466 - +0.5 443,466 - -0.5 443,633 - -0.5 443,687 + MPMX19_05725 0.12 -1.3 443,687 + MPMX19_05725 0.12 -1.1 443,687 + MPMX19_05725 0.12 -0.8 443,687 + MPMX19_05725 0.12 -1.1 443,688 - MPMX19_05725 0.12 -0.5 443,688 - MPMX19_05725 0.12 -0.8 443,688 - MPMX19_05725 0.12 -0.8 443,688 - MPMX19_05725 0.12 -1.1 443,871 - MPMX19_05725 0.24 -1.1 443,903 + MPMX19_05725 0.27 -1.3 444,242 + MPMX19_05725 0.50 -1.6 444,242 + MPMX19_05725 0.50 +0.5 444,242 + MPMX19_05725 0.50 -0.1 444,603 - MPMX19_05725 0.76 -0.5 444,674 + MPMX19_05725 0.81 -1.3 444,675 - MPMX19_05725 0.81 +0.1 444,678 - MPMX19_05725 0.81 -1.1 444,952 + -0.8 444,952 + -0.5 444,952 + -0.3 444,952 + +1.3 444,952 + +0.2 444,952 + -0.5 444,952 + +1.1 444,952 + +0.5 444,952 + -1.9 444,952 + -0.5 444,953 - -0.5 444,953 - +0.5 444,953 - +1.8 444,953 - -0.3 444,953 - -0.5 444,953 - -0.5 444,953 - -1.5 445,457 - MPMX19_05726 0.64 +0.1 445,457 - MPMX19_05726 0.64 +0.4 445,457 - MPMX19_05726 0.64 -0.9 445,678 + -0.3 445,678 + -1.1 445,678 + +0.5 445,678 + +0.3 445,678 + +1.4 445,678 + +0.2 445,678 + +0.5 445,678 + +0.3 445,678 + -1.6 445,678 + +1.5 445,678 + -1.1 445,678 + -0.6 445,678 + +0.1 445,679 - -1.7 445,679 - -1.8 445,679 - -1.1 445,679 - -0.3 445,679 - -1.9 445,679 - -0.5 445,679 - -1.1 445,679 - -0.1 445,679 - -1.2 445,679 - -0.5 445,679 - -1.6 445,679 - -0.5 445,679 - -1.1 445,760 + -0.1 445,760 + -0.8 445,761 - +0.7 445,761 - +0.5 445,761 - -0.8 445,761 - +0.5 445,765 + -0.8 445,765 + -0.1 445,765 + -1.3 445,765 + -1.5 445,765 + -1.3 445,765 + +0.5 445,766 - +3.1 445,766 - +0.1 445,766 - +0.5 445,795 + +0.9 445,946 - MPMX19_05727 0.10 +1.5 445,946 - MPMX19_05727 0.10 +0.5
Or see this region's nucleotide sequence