Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05670

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05668 and MPMX19_05669 are separated by 128 nucleotidesMPMX19_05669 and MPMX19_05670 are separated by 170 nucleotidesMPMX19_05670 and MPMX19_05671 are separated by 181 nucleotides MPMX19_05668: MPMX19_05668 - Chaperone protein TorD, at 386,907 to 387,515 _05668 MPMX19_05669: MPMX19_05669 - hypothetical protein, at 387,644 to 387,850 _05669 MPMX19_05670: MPMX19_05670 - Quinolinate synthase A, at 388,021 to 389,031 _05670 MPMX19_05671: MPMX19_05671 - L-aspartate oxidase, at 389,213 to 390,862 _05671 Position (kb) 388 389 390Strain fitness (log2 ratio) -2 -1 0 1 2 3at 387.250 kb on + strand, within MPMX19_05668at 387.250 kb on + strand, within MPMX19_05668at 387.251 kb on - strand, within MPMX19_05668at 387.251 kb on - strand, within MPMX19_05668at 387.251 kb on - strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.253 kb on + strand, within MPMX19_05668at 387.254 kb on - strand, within MPMX19_05668at 387.254 kb on - strand, within MPMX19_05668at 387.254 kb on - strand, within MPMX19_05668at 387.254 kb on - strand, within MPMX19_05668at 387.254 kb on - strand, within MPMX19_05668at 387.254 kb on - strand, within MPMX19_05668at 387.254 kb on - strand, within MPMX19_05668at 387.254 kb on - strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.262 kb on + strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.263 kb on - strand, within MPMX19_05668at 387.463 kb on + strandat 387.464 kb on - strandat 387.562 kb on - strandat 387.562 kb on - strandat 387.562 kb on - strandat 387.873 kb on + strandat 387.873 kb on + strandat 387.874 kb on - strandat 387.874 kb on - strandat 387.964 kb on - strandat 387.980 kb on + strandat 388.045 kb on + strandat 388.045 kb on + strandat 388.045 kb on + strandat 388.045 kb on + strandat 388.045 kb on + strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.046 kb on - strandat 388.195 kb on + strand, within MPMX19_05670at 388.195 kb on + strand, within MPMX19_05670at 388.195 kb on + strand, within MPMX19_05670at 388.195 kb on + strand, within MPMX19_05670at 388.195 kb on + strand, within MPMX19_05670at 388.195 kb on + strand, within MPMX19_05670at 388.195 kb on + strand, within MPMX19_05670at 388.196 kb on - strand, within MPMX19_05670at 388.196 kb on - strand, within MPMX19_05670at 388.196 kb on - strand, within MPMX19_05670at 388.196 kb on - strand, within MPMX19_05670at 388.196 kb on - strand, within MPMX19_05670at 388.196 kb on - strand, within MPMX19_05670at 388.456 kb on + strand, within MPMX19_05670at 388.456 kb on + strand, within MPMX19_05670at 388.456 kb on + strand, within MPMX19_05670at 388.456 kb on + strand, within MPMX19_05670at 388.456 kb on + strand, within MPMX19_05670at 388.456 kb on + strand, within MPMX19_05670at 388.456 kb on + strand, within MPMX19_05670at 388.456 kb on + strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.457 kb on - strand, within MPMX19_05670at 388.573 kb on + strand, within MPMX19_05670at 388.574 kb on - strand, within MPMX19_05670at 388.574 kb on - strand, within MPMX19_05670at 388.574 kb on - strand, within MPMX19_05670at 388.585 kb on + strand, within MPMX19_05670at 388.585 kb on + strand, within MPMX19_05670at 388.585 kb on + strand, within MPMX19_05670at 388.585 kb on + strand, within MPMX19_05670at 388.585 kb on + strand, within MPMX19_05670at 388.585 kb on + strand, within MPMX19_05670at 388.585 kb on + strand, within MPMX19_05670at 388.585 kb on + strand, within MPMX19_05670at 388.585 kb on + strand, within MPMX19_05670at 388.585 kb on + strand, within MPMX19_05670at 388.585 kb on + strand, within MPMX19_05670at 388.585 kb on + strand, within MPMX19_05670at 388.585 kb on + strand, within MPMX19_05670at 388.585 kb on + strand, within MPMX19_05670at 388.585 kb on + strand, within MPMX19_05670at 388.585 kb on + strand, within MPMX19_05670at 388.585 kb on + strand, within MPMX19_05670at 388.585 kb on + strand, within MPMX19_05670at 388.585 kb on + strand, within MPMX19_05670at 388.586 kb on - strand, within MPMX19_05670at 388.586 kb on - strand, within MPMX19_05670at 388.586 kb on - strand, within MPMX19_05670at 388.586 kb on - strand, within MPMX19_05670at 388.586 kb on - strand, within MPMX19_05670at 388.586 kb on - strand, within MPMX19_05670at 388.586 kb on - strand, within MPMX19_05670at 388.586 kb on - strand, within MPMX19_05670at 388.586 kb on - strand, within MPMX19_05670at 388.586 kb on - strand, within MPMX19_05670at 388.586 kb on - strand, within MPMX19_05670at 388.586 kb on - strand, within MPMX19_05670at 388.586 kb on - strand, within MPMX19_05670at 388.586 kb on - strand, within MPMX19_05670at 388.586 kb on - strand, within MPMX19_05670at 388.586 kb on - strand, within MPMX19_05670at 389.212 kb on + strandat 389.212 kb on + strandat 389.212 kb on + strandat 389.212 kb on + strandat 389.212 kb on + strandat 389.213 kb on - strandat 389.213 kb on - strandat 389.213 kb on - strandat 389.231 kb on + strandat 389.231 kb on + strandat 389.231 kb on + strandat 389.231 kb on + strandat 389.231 kb on + strandat 389.231 kb on + strandat 389.231 kb on + strandat 389.231 kb on + strandat 389.231 kb on + strandat 389.231 kb on + strandat 389.232 kb on - strandat 389.232 kb on - strandat 389.232 kb on - strandat 389.232 kb on - strandat 389.232 kb on - strandat 389.232 kb on - strandat 389.232 kb on - strandat 389.232 kb on - strandat 389.363 kb on + strandat 389.363 kb on + strandat 389.364 kb on - strandat 389.364 kb on - strandat 389.364 kb on - strandat 389.364 kb on - strandat 389.364 kb on - strandat 389.364 kb on - strandat 389.364 kb on - strandat 389.454 kb on + strand, within MPMX19_05671at 389.454 kb on + strand, within MPMX19_05671at 389.454 kb on + strand, within MPMX19_05671at 389.454 kb on + strand, within MPMX19_05671at 389.454 kb on + strand, within MPMX19_05671at 389.454 kb on + strand, within MPMX19_05671at 389.454 kb on + strand, within MPMX19_05671at 389.454 kb on + strand, within MPMX19_05671at 389.454 kb on + strand, within MPMX19_05671at 389.454 kb on + strand, within MPMX19_05671at 389.454 kb on + strand, within MPMX19_05671at 389.454 kb on + strand, within MPMX19_05671at 389.454 kb on + strand, within MPMX19_05671at 389.455 kb on - strand, within MPMX19_05671at 389.455 kb on - strand, within MPMX19_05671at 389.455 kb on - strand, within MPMX19_05671at 389.455 kb on - strand, within MPMX19_05671at 389.455 kb on - strand, within MPMX19_05671at 389.455 kb on - strand, within MPMX19_05671at 389.455 kb on - strand, within MPMX19_05671at 389.455 kb on - strand, within MPMX19_05671at 389.455 kb on - strand, within MPMX19_05671at 389.455 kb on - strand, within MPMX19_05671

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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387,250 + MPMX19_05668 0.56 -1.6
387,250 + MPMX19_05668 0.56 -0.3
387,251 - MPMX19_05668 0.56 -0.8
387,251 - MPMX19_05668 0.56 +0.5
387,251 - MPMX19_05668 0.56 -0.5
387,253 + MPMX19_05668 0.57 +0.1
387,253 + MPMX19_05668 0.57 -0.8
387,253 + MPMX19_05668 0.57 -0.5
387,253 + MPMX19_05668 0.57 +0.9
387,253 + MPMX19_05668 0.57 -1.5
387,253 + MPMX19_05668 0.57 -1.5
387,253 + MPMX19_05668 0.57 -0.6
387,253 + MPMX19_05668 0.57 -0.5
387,253 + MPMX19_05668 0.57 +0.5
387,253 + MPMX19_05668 0.57 -1.9
387,253 + MPMX19_05668 0.57 +2.5
387,254 - MPMX19_05668 0.57 -0.5
387,254 - MPMX19_05668 0.57 -1.8
387,254 - MPMX19_05668 0.57 -1.1
387,254 - MPMX19_05668 0.57 +1.9
387,254 - MPMX19_05668 0.57 -0.1
387,254 - MPMX19_05668 0.57 +1.5
387,254 - MPMX19_05668 0.57 -1.8
387,254 - MPMX19_05668 0.57 -0.5
387,262 + MPMX19_05668 0.58 -0.8
387,262 + MPMX19_05668 0.58 -0.5
387,262 + MPMX19_05668 0.58 -0.5
387,262 + MPMX19_05668 0.58 -0.3
387,262 + MPMX19_05668 0.58 -0.8
387,262 + MPMX19_05668 0.58 +1.8
387,262 + MPMX19_05668 0.58 -0.2
387,262 + MPMX19_05668 0.58 -0.5
387,262 + MPMX19_05668 0.58 -1.8
387,262 + MPMX19_05668 0.58 -0.3
387,262 + MPMX19_05668 0.58 -0.5
387,262 + MPMX19_05668 0.58 -0.2
387,262 + MPMX19_05668 0.58 -0.1
387,262 + MPMX19_05668 0.58 -0.8
387,263 - MPMX19_05668 0.58 -0.8
387,263 - MPMX19_05668 0.58 -1.3
387,263 - MPMX19_05668 0.58 +0.9
387,263 - MPMX19_05668 0.58 -1.2
387,263 - MPMX19_05668 0.58 +0.2
387,263 - MPMX19_05668 0.58 -0.2
387,263 - MPMX19_05668 0.58 -0.3
387,263 - MPMX19_05668 0.58 -0.7
387,263 - MPMX19_05668 0.58 +1.2
387,263 - MPMX19_05668 0.58 +1.5
387,263 - MPMX19_05668 0.58 -0.8
387,263 - MPMX19_05668 0.58 -0.5
387,263 - MPMX19_05668 0.58 +0.1
387,263 - MPMX19_05668 0.58 -1.1
387,463 + -2.5
387,464 - +0.8
387,562 - -1.5
387,562 - +0.4
387,562 - +0.3
387,873 + -1.6
387,873 + +0.8
387,874 - +0.1
387,874 - -1.1
387,964 - -1.1
387,980 + -2.2
388,045 + -0.3
388,045 + -0.5
388,045 + -1.1
388,045 + +0.9
388,045 + +0.5
388,046 - -0.8
388,046 - +0.1
388,046 - -0.2
388,046 - -1.3
388,046 - -1.2
388,046 - +0.3
388,046 - +0.5
388,046 - +1.5
388,046 - +0.5
388,046 - -0.1
388,046 - -0.8
388,195 + MPMX19_05670 0.17 +0.9
388,195 + MPMX19_05670 0.17 +0.7
388,195 + MPMX19_05670 0.17 -1.5
388,195 + MPMX19_05670 0.17 -1.5
388,195 + MPMX19_05670 0.17 -0.8
388,195 + MPMX19_05670 0.17 -0.6
388,195 + MPMX19_05670 0.17 -1.1
388,196 - MPMX19_05670 0.17 -1.1
388,196 - MPMX19_05670 0.17 +0.1
388,196 - MPMX19_05670 0.17 -0.1
388,196 - MPMX19_05670 0.17 +0.9
388,196 - MPMX19_05670 0.17 +0.1
388,196 - MPMX19_05670 0.17 +0.1
388,456 + MPMX19_05670 0.43 -1.3
388,456 + MPMX19_05670 0.43 +0.2
388,456 + MPMX19_05670 0.43 +0.7
388,456 + MPMX19_05670 0.43 -0.6
388,456 + MPMX19_05670 0.43 +0.1
388,456 + MPMX19_05670 0.43 -0.3
388,456 + MPMX19_05670 0.43 -1.3
388,456 + MPMX19_05670 0.43 -1.4
388,457 - MPMX19_05670 0.43 +0.5
388,457 - MPMX19_05670 0.43 +0.0
388,457 - MPMX19_05670 0.43 +0.9
388,457 - MPMX19_05670 0.43 -0.8
388,457 - MPMX19_05670 0.43 -0.1
388,457 - MPMX19_05670 0.43 +2.1
388,457 - MPMX19_05670 0.43 +0.5
388,457 - MPMX19_05670 0.43 -0.5
388,457 - MPMX19_05670 0.43 +0.9
388,457 - MPMX19_05670 0.43 -0.4
388,457 - MPMX19_05670 0.43 -0.3
388,457 - MPMX19_05670 0.43 +0.4
388,457 - MPMX19_05670 0.43 +0.5
388,457 - MPMX19_05670 0.43 -0.2
388,457 - MPMX19_05670 0.43 +0.3
388,573 + MPMX19_05670 0.55 -0.8
388,574 - MPMX19_05670 0.55 -0.1
388,574 - MPMX19_05670 0.55 +0.3
388,574 - MPMX19_05670 0.55 +1.5
388,585 + MPMX19_05670 0.56 -0.1
388,585 + MPMX19_05670 0.56 -0.1
388,585 + MPMX19_05670 0.56 -0.1
388,585 + MPMX19_05670 0.56 +0.9
388,585 + MPMX19_05670 0.56 -0.5
388,585 + MPMX19_05670 0.56 -2.1
388,585 + MPMX19_05670 0.56 -2.2
388,585 + MPMX19_05670 0.56 -0.5
388,585 + MPMX19_05670 0.56 -0.1
388,585 + MPMX19_05670 0.56 +1.5
388,585 + MPMX19_05670 0.56 +0.8
388,585 + MPMX19_05670 0.56 -1.1
388,585 + MPMX19_05670 0.56 -0.5
388,585 + MPMX19_05670 0.56 -0.1
388,585 + MPMX19_05670 0.56 -1.1
388,585 + MPMX19_05670 0.56 -1.1
388,585 + MPMX19_05670 0.56 -1.8
388,585 + MPMX19_05670 0.56 -2.4
388,585 + MPMX19_05670 0.56 +0.2
388,586 - MPMX19_05670 0.56 -1.3
388,586 - MPMX19_05670 0.56 +1.5
388,586 - MPMX19_05670 0.56 -0.6
388,586 - MPMX19_05670 0.56 +0.2
388,586 - MPMX19_05670 0.56 +0.5
388,586 - MPMX19_05670 0.56 +0.5
388,586 - MPMX19_05670 0.56 +3.1
388,586 - MPMX19_05670 0.56 +0.2
388,586 - MPMX19_05670 0.56 -0.1
388,586 - MPMX19_05670 0.56 +0.5
388,586 - MPMX19_05670 0.56 -0.5
388,586 - MPMX19_05670 0.56 -0.3
388,586 - MPMX19_05670 0.56 -0.5
388,586 - MPMX19_05670 0.56 +0.2
388,586 - MPMX19_05670 0.56 -0.8
388,586 - MPMX19_05670 0.56 -0.6
389,212 + +0.9
389,212 + -0.8
389,212 + -1.3
389,212 + -0.1
389,212 + -2.5
389,213 - -0.1
389,213 - +0.5
389,213 - -0.8
389,231 + -0.6
389,231 + -0.5
389,231 + -1.2
389,231 + -1.9
389,231 + +1.5
389,231 + +0.8
389,231 + -0.9
389,231 + +0.3
389,231 + -1.6
389,231 + -0.1
389,232 - +0.5
389,232 - +0.5
389,232 - -1.7
389,232 - -0.1
389,232 - +0.2
389,232 - +1.2
389,232 - -0.8
389,232 - -0.7
389,363 + +0.2
389,363 + -0.0
389,364 - +0.9
389,364 - -0.5
389,364 - -1.1
389,364 - -0.9
389,364 - -2.1
389,364 - -0.8
389,364 - -0.5
389,454 + MPMX19_05671 0.15 -2.1
389,454 + MPMX19_05671 0.15 -0.5
389,454 + MPMX19_05671 0.15 +0.8
389,454 + MPMX19_05671 0.15 -0.8
389,454 + MPMX19_05671 0.15 +0.5
389,454 + MPMX19_05671 0.15 -0.5
389,454 + MPMX19_05671 0.15 +0.5
389,454 + MPMX19_05671 0.15 +0.1
389,454 + MPMX19_05671 0.15 -0.1
389,454 + MPMX19_05671 0.15 +2.1
389,454 + MPMX19_05671 0.15 -0.1
389,454 + MPMX19_05671 0.15 -1.4
389,454 + MPMX19_05671 0.15 +0.3
389,455 - MPMX19_05671 0.15 -1.1
389,455 - MPMX19_05671 0.15 -1.9
389,455 - MPMX19_05671 0.15 -2.4
389,455 - MPMX19_05671 0.15 +0.3
389,455 - MPMX19_05671 0.15 +0.5
389,455 - MPMX19_05671 0.15 -0.2
389,455 - MPMX19_05671 0.15 -0.8
389,455 - MPMX19_05671 0.15 -1.9
389,455 - MPMX19_05671 0.15 +0.1
389,455 - MPMX19_05671 0.15 -1.2

Or see this region's nucleotide sequence