Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05555

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05554 and MPMX19_05555 are separated by 7 nucleotidesMPMX19_05555 and MPMX19_05556 are separated by 11 nucleotidesMPMX19_05556 and MPMX19_05557 overlap by 4 nucleotides MPMX19_05554: MPMX19_05554 - hypothetical protein, at 262,394 to 264,079 _05554 MPMX19_05555: MPMX19_05555 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 264,087 to 265,223 _05555 MPMX19_05556: MPMX19_05556 - hypothetical protein, at 265,235 to 265,858 _05556 MPMX19_05557: MPMX19_05557 - Chemotaxis protein methyltransferase Cher2, at 265,855 to 266,742 _05557 Position (kb) 264 265 266Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 263.600 kb on + strand, within MPMX19_05554at 263.600 kb on + strand, within MPMX19_05554at 263.600 kb on + strand, within MPMX19_05554at 263.601 kb on - strand, within MPMX19_05554at 263.601 kb on - strand, within MPMX19_05554at 263.601 kb on - strand, within MPMX19_05554at 263.601 kb on - strand, within MPMX19_05554at 263.601 kb on - strand, within MPMX19_05554at 263.601 kb on - strand, within MPMX19_05554at 263.601 kb on - strand, within MPMX19_05554at 263.601 kb on - strand, within MPMX19_05554at 263.601 kb on - strand, within MPMX19_05554at 263.974 kb on + strandat 263.975 kb on - strandat 264.422 kb on + strand, within MPMX19_05555at 264.719 kb on + strand, within MPMX19_05555at 264.719 kb on + strand, within MPMX19_05555at 264.719 kb on + strand, within MPMX19_05555at 264.719 kb on + strand, within MPMX19_05555at 264.719 kb on + strand, within MPMX19_05555at 264.719 kb on + strand, within MPMX19_05555at 264.719 kb on + strand, within MPMX19_05555at 264.719 kb on + strand, within MPMX19_05555at 264.719 kb on + strand, within MPMX19_05555at 264.719 kb on + strand, within MPMX19_05555at 264.719 kb on + strand, within MPMX19_05555at 264.719 kb on + strand, within MPMX19_05555at 264.719 kb on + strand, within MPMX19_05555at 264.720 kb on - strand, within MPMX19_05555at 264.720 kb on - strand, within MPMX19_05555at 264.720 kb on - strand, within MPMX19_05555at 264.720 kb on - strand, within MPMX19_05555at 264.720 kb on - strand, within MPMX19_05555at 264.720 kb on - strand, within MPMX19_05555at 264.720 kb on - strand, within MPMX19_05555at 264.720 kb on - strand, within MPMX19_05555at 264.720 kb on - strand, within MPMX19_05555at 264.720 kb on - strand, within MPMX19_05555at 265.222 kb on - strandat 265.222 kb on - strandat 265.222 kb on - strandat 265.632 kb on + strand, within MPMX19_05556at 265.633 kb on - strand, within MPMX19_05556at 265.903 kb on + strandat 265.903 kb on + strandat 265.903 kb on + strandat 265.903 kb on + strandat 265.903 kb on + strandat 265.903 kb on + strandat 265.903 kb on + strandat 265.903 kb on + strandat 265.903 kb on + strandat 265.903 kb on + strandat 265.904 kb on - strandat 265.904 kb on - strandat 265.904 kb on - strandat 265.904 kb on - strandat 265.904 kb on - strandat 265.904 kb on - strandat 265.904 kb on - strandat 265.904 kb on - strandat 265.904 kb on - strandat 265.966 kb on + strand, within MPMX19_05557at 265.966 kb on + strand, within MPMX19_05557at 265.966 kb on + strand, within MPMX19_05557at 265.967 kb on - strand, within MPMX19_05557at 265.967 kb on - strand, within MPMX19_05557at 265.967 kb on - strand, within MPMX19_05557at 265.969 kb on + strand, within MPMX19_05557at 265.969 kb on + strand, within MPMX19_05557at 265.969 kb on + strand, within MPMX19_05557at 265.969 kb on + strand, within MPMX19_05557at 265.969 kb on + strand, within MPMX19_05557at 265.969 kb on + strand, within MPMX19_05557at 265.969 kb on + strand, within MPMX19_05557at 265.969 kb on + strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 265.970 kb on - strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.029 kb on + strand, within MPMX19_05557at 266.030 kb on - strand, within MPMX19_05557at 266.030 kb on - strand, within MPMX19_05557at 266.030 kb on - strand, within MPMX19_05557at 266.030 kb on - strand, within MPMX19_05557at 266.030 kb on - strand, within MPMX19_05557at 266.030 kb on - strand, within MPMX19_05557at 266.030 kb on - strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.107 kb on + strand, within MPMX19_05557at 266.108 kb on - strand, within MPMX19_05557at 266.108 kb on - strand, within MPMX19_05557at 266.108 kb on - strand, within MPMX19_05557at 266.108 kb on - strand, within MPMX19_05557at 266.108 kb on - strand, within MPMX19_05557at 266.108 kb on - strand, within MPMX19_05557at 266.108 kb on - strand, within MPMX19_05557at 266.108 kb on - strand, within MPMX19_05557at 266.125 kb on + strand, within MPMX19_05557at 266.125 kb on + strand, within MPMX19_05557at 266.125 kb on + strand, within MPMX19_05557at 266.125 kb on + strand, within MPMX19_05557at 266.125 kb on + strand, within MPMX19_05557at 266.125 kb on + strand, within MPMX19_05557at 266.126 kb on - strand, within MPMX19_05557at 266.126 kb on - strand, within MPMX19_05557at 266.126 kb on - strand, within MPMX19_05557at 266.126 kb on - strand, within MPMX19_05557at 266.126 kb on - strand, within MPMX19_05557at 266.126 kb on - strand, within MPMX19_05557

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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263,600 + MPMX19_05554 0.72 -0.1
263,600 + MPMX19_05554 0.72 -2.5
263,600 + MPMX19_05554 0.72 +0.2
263,601 - MPMX19_05554 0.72 -1.1
263,601 - MPMX19_05554 0.72 +1.2
263,601 - MPMX19_05554 0.72 -1.3
263,601 - MPMX19_05554 0.72 -0.8
263,601 - MPMX19_05554 0.72 +1.2
263,601 - MPMX19_05554 0.72 -1.5
263,601 - MPMX19_05554 0.72 -0.3
263,601 - MPMX19_05554 0.72 -0.8
263,601 - MPMX19_05554 0.72 +0.2
263,974 + +2.8
263,975 - -0.4
264,422 + MPMX19_05555 0.29 -0.1
264,719 + MPMX19_05555 0.56 -1.8
264,719 + MPMX19_05555 0.56 +1.5
264,719 + MPMX19_05555 0.56 -2.1
264,719 + MPMX19_05555 0.56 -0.5
264,719 + MPMX19_05555 0.56 -2.2
264,719 + MPMX19_05555 0.56 -1.1
264,719 + MPMX19_05555 0.56 -0.8
264,719 + MPMX19_05555 0.56 -1.0
264,719 + MPMX19_05555 0.56 -1.3
264,719 + MPMX19_05555 0.56 -0.5
264,719 + MPMX19_05555 0.56 -0.8
264,719 + MPMX19_05555 0.56 -1.6
264,719 + MPMX19_05555 0.56 +0.8
264,720 - MPMX19_05555 0.56 -0.8
264,720 - MPMX19_05555 0.56 -1.5
264,720 - MPMX19_05555 0.56 +1.5
264,720 - MPMX19_05555 0.56 -0.3
264,720 - MPMX19_05555 0.56 +0.5
264,720 - MPMX19_05555 0.56 -0.8
264,720 - MPMX19_05555 0.56 -0.5
264,720 - MPMX19_05555 0.56 -1.3
264,720 - MPMX19_05555 0.56 -1.1
264,720 - MPMX19_05555 0.56 -1.1
265,222 - -0.8
265,222 - -1.6
265,222 - -1.3
265,632 + MPMX19_05556 0.64 +0.5
265,633 - MPMX19_05556 0.64 -0.8
265,903 + +0.5
265,903 + +1.1
265,903 + -0.1
265,903 + -1.1
265,903 + -1.3
265,903 + -0.1
265,903 + -0.8
265,903 + -0.1
265,903 + -1.8
265,903 + +0.2
265,904 - +1.5
265,904 - -0.2
265,904 - -1.2
265,904 - -0.8
265,904 - +0.5
265,904 - -0.3
265,904 - +0.5
265,904 - +0.5
265,904 - -1.1
265,966 + MPMX19_05557 0.12 -1.1
265,966 + MPMX19_05557 0.12 +0.5
265,966 + MPMX19_05557 0.12 -1.0
265,967 - MPMX19_05557 0.13 -2.0
265,967 - MPMX19_05557 0.13 -1.1
265,967 - MPMX19_05557 0.13 -0.1
265,969 + MPMX19_05557 0.13 -0.3
265,969 + MPMX19_05557 0.13 +3.1
265,969 + MPMX19_05557 0.13 +0.5
265,969 + MPMX19_05557 0.13 -1.1
265,969 + MPMX19_05557 0.13 -1.3
265,969 + MPMX19_05557 0.13 -1.2
265,969 + MPMX19_05557 0.13 -1.1
265,969 + MPMX19_05557 0.13 -0.6
265,970 - MPMX19_05557 0.13 -1.8
265,970 - MPMX19_05557 0.13 -0.3
265,970 - MPMX19_05557 0.13 +1.8
265,970 - MPMX19_05557 0.13 +0.6
265,970 - MPMX19_05557 0.13 +0.3
265,970 - MPMX19_05557 0.13 -0.5
265,970 - MPMX19_05557 0.13 -0.8
265,970 - MPMX19_05557 0.13 -0.2
265,970 - MPMX19_05557 0.13 -1.5
265,970 - MPMX19_05557 0.13 -2.8
266,029 + MPMX19_05557 0.20 -0.6
266,029 + MPMX19_05557 0.20 -1.1
266,029 + MPMX19_05557 0.20 -0.8
266,029 + MPMX19_05557 0.20 -1.2
266,029 + MPMX19_05557 0.20 +0.3
266,029 + MPMX19_05557 0.20 +0.5
266,029 + MPMX19_05557 0.20 -0.1
266,029 + MPMX19_05557 0.20 -2.3
266,029 + MPMX19_05557 0.20 -0.2
266,029 + MPMX19_05557 0.20 -0.1
266,029 + MPMX19_05557 0.20 -0.8
266,030 - MPMX19_05557 0.20 -0.5
266,030 - MPMX19_05557 0.20 -0.4
266,030 - MPMX19_05557 0.20 -0.1
266,030 - MPMX19_05557 0.20 -1.3
266,030 - MPMX19_05557 0.20 -0.2
266,030 - MPMX19_05557 0.20 -1.3
266,030 - MPMX19_05557 0.20 -0.5
266,107 + MPMX19_05557 0.28 -1.2
266,107 + MPMX19_05557 0.28 -0.5
266,107 + MPMX19_05557 0.28 +1.1
266,107 + MPMX19_05557 0.28 +1.9
266,107 + MPMX19_05557 0.28 -1.0
266,107 + MPMX19_05557 0.28 +0.3
266,107 + MPMX19_05557 0.28 -0.8
266,107 + MPMX19_05557 0.28 +0.5
266,107 + MPMX19_05557 0.28 -0.9
266,107 + MPMX19_05557 0.28 +1.9
266,108 - MPMX19_05557 0.28 -2.0
266,108 - MPMX19_05557 0.28 -0.1
266,108 - MPMX19_05557 0.28 +0.2
266,108 - MPMX19_05557 0.28 -0.1
266,108 - MPMX19_05557 0.28 +1.5
266,108 - MPMX19_05557 0.28 -1.7
266,108 - MPMX19_05557 0.28 -1.3
266,108 - MPMX19_05557 0.28 -0.5
266,125 + MPMX19_05557 0.30 +1.5
266,125 + MPMX19_05557 0.30 +1.5
266,125 + MPMX19_05557 0.30 -0.2
266,125 + MPMX19_05557 0.30 -2.0
266,125 + MPMX19_05557 0.30 +0.6
266,125 + MPMX19_05557 0.30 -0.7
266,126 - MPMX19_05557 0.31 +0.5
266,126 - MPMX19_05557 0.31 -0.6
266,126 - MPMX19_05557 0.31 +1.1
266,126 - MPMX19_05557 0.31 -0.6
266,126 - MPMX19_05557 0.31 +0.2
266,126 - MPMX19_05557 0.31 +0.8

Or see this region's nucleotide sequence