Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05245 and MPMX19_05246 are separated by 175 nucleotides MPMX19_05246 and MPMX19_05247 overlap by 35 nucleotides MPMX19_05247 and MPMX19_05248 are separated by 126 nucleotides MPMX19_05248 and MPMX19_05249 overlap by 4 nucleotides
MPMX19_05245: MPMX19_05245 - Trifunctional nucleotide phosphoesterase protein YfkN, at 774,709 to 776,223
_05245
MPMX19_05246: MPMX19_05246 - Carbamoyl-phosphate synthase small chain, at 776,399 to 777,097
_05246
MPMX19_05247: MPMX19_05247 - Molybdenum cofactor guanylyltransferase, at 777,063 to 778,721
_05247
MPMX19_05248: MPMX19_05248 - hypothetical protein, at 778,848 to 779,564
_05248
MPMX19_05249: MPMX19_05249 - hypothetical protein, at 779,561 to 779,890
_05249
Position (kb) 777
778
779 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 776.101 kb on + strand at 776.101 kb on + strand at 776.102 kb on - strand at 776.102 kb on - strand at 776.108 kb on + strand at 776.108 kb on + strand at 776.108 kb on + strand at 776.108 kb on + strand at 776.108 kb on + strand at 776.109 kb on - strand at 776.109 kb on - strand at 776.109 kb on - strand at 776.109 kb on - strand at 776.125 kb on + strand at 776.125 kb on + strand at 776.125 kb on + strand at 776.125 kb on + strand at 776.125 kb on + strand at 776.125 kb on + strand at 776.125 kb on + strand at 776.125 kb on + strand at 776.125 kb on + strand at 776.125 kb on + strand at 776.126 kb on - strand at 776.126 kb on - strand at 776.126 kb on - strand at 776.126 kb on - strand at 776.126 kb on - strand at 776.126 kb on - strand at 776.126 kb on - strand at 776.126 kb on - strand at 776.126 kb on - strand at 776.126 kb on - strand at 776.126 kb on - strand at 776.126 kb on - strand at 776.126 kb on - strand at 776.260 kb on + strand at 776.260 kb on + strand at 776.260 kb on + strand at 776.260 kb on + strand at 776.260 kb on + strand at 776.260 kb on + strand at 776.260 kb on + strand at 776.261 kb on - strand at 776.261 kb on - strand at 776.261 kb on - strand at 776.261 kb on - strand at 776.261 kb on - strand at 776.261 kb on - strand at 776.261 kb on - strand at 776.261 kb on - strand at 776.261 kb on - strand at 776.261 kb on - strand at 776.261 kb on - strand at 776.261 kb on - strand at 776.261 kb on - strand at 776.318 kb on + strand at 776.372 kb on + strand at 776.372 kb on + strand at 776.372 kb on + strand at 776.373 kb on - strand at 776.531 kb on + strand, within MPMX19_05246 at 776.532 kb on - strand, within MPMX19_05246 at 776.532 kb on - strand, within MPMX19_05246 at 776.687 kb on + strand, within MPMX19_05246 at 776.688 kb on - strand, within MPMX19_05246 at 776.702 kb on + strand, within MPMX19_05246 at 776.703 kb on - strand, within MPMX19_05246 at 776.816 kb on + strand, within MPMX19_05246 at 776.816 kb on + strand, within MPMX19_05246 at 776.816 kb on + strand, within MPMX19_05246 at 776.816 kb on + strand, within MPMX19_05246 at 776.817 kb on - strand, within MPMX19_05246 at 776.817 kb on - strand, within MPMX19_05246 at 776.817 kb on - strand, within MPMX19_05246 at 776.858 kb on + strand, within MPMX19_05246 at 776.858 kb on + strand, within MPMX19_05246 at 776.858 kb on + strand, within MPMX19_05246 at 776.859 kb on - strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.906 kb on + strand, within MPMX19_05246 at 776.907 kb on + strand, within MPMX19_05246 at 776.907 kb on - strand, within MPMX19_05246 at 776.907 kb on - strand, within MPMX19_05246 at 776.907 kb on - strand, within MPMX19_05246 at 776.907 kb on - strand, within MPMX19_05246 at 776.907 kb on - strand, within MPMX19_05246 at 776.907 kb on - strand, within MPMX19_05246 at 776.907 kb on - strand, within MPMX19_05246 at 776.907 kb on - strand, within MPMX19_05246 at 776.907 kb on - strand, within MPMX19_05246 at 776.907 kb on - strand, within MPMX19_05246 at 776.907 kb on - strand, within MPMX19_05246 at 776.907 kb on - strand, within MPMX19_05246 at 776.907 kb on - strand, within MPMX19_05246 at 776.907 kb on - strand, within MPMX19_05246 at 776.907 kb on - strand, within MPMX19_05246 at 776.907 kb on - strand, within MPMX19_05246 at 776.907 kb on - strand, within MPMX19_05246 at 776.907 kb on - strand, within MPMX19_05246 at 776.907 kb on - strand, within MPMX19_05246 at 777.028 kb on + strand at 777.029 kb on - strand at 777.029 kb on - strand at 777.029 kb on - strand at 777.029 kb on - strand at 777.064 kb on + strand at 777.064 kb on + strand at 777.064 kb on + strand at 777.064 kb on + strand at 777.064 kb on + strand at 777.064 kb on + strand at 777.065 kb on - strand at 777.065 kb on - strand at 777.157 kb on + strand at 777.157 kb on + strand at 777.157 kb on + strand at 777.157 kb on + strand at 777.158 kb on - strand at 777.158 kb on - strand at 777.158 kb on - strand at 777.346 kb on + strand, within MPMX19_05247 at 777.346 kb on + strand, within MPMX19_05247 at 777.346 kb on + strand, within MPMX19_05247 at 777.347 kb on - strand, within MPMX19_05247 at 777.461 kb on + strand, within MPMX19_05247 at 777.461 kb on + strand, within MPMX19_05247 at 777.461 kb on + strand, within MPMX19_05247 at 777.461 kb on + strand, within MPMX19_05247 at 777.462 kb on - strand, within MPMX19_05247 at 777.462 kb on - strand, within MPMX19_05247 at 777.462 kb on - strand, within MPMX19_05247 at 777.462 kb on - strand, within MPMX19_05247 at 777.462 kb on - strand, within MPMX19_05247 at 777.462 kb on - strand, within MPMX19_05247 at 777.462 kb on - strand, within MPMX19_05247 at 777.462 kb on - strand, within MPMX19_05247 at 778.762 kb on - strand at 778.762 kb on - strand at 778.820 kb on + strand at 778.820 kb on + strand at 778.821 kb on - strand at 778.821 kb on - strand at 779.047 kb on + strand, within MPMX19_05248 at 779.047 kb on + strand, within MPMX19_05248 at 779.047 kb on + strand, within MPMX19_05248 at 779.047 kb on + strand, within MPMX19_05248 at 779.047 kb on + strand, within MPMX19_05248 at 779.047 kb on + strand, within MPMX19_05248 at 779.047 kb on + strand, within MPMX19_05248 at 779.047 kb on + strand, within MPMX19_05248 at 779.047 kb on + strand, within MPMX19_05248 at 779.047 kb on + strand, within MPMX19_05248 at 779.047 kb on + strand, within MPMX19_05248 at 779.047 kb on + strand, within MPMX19_05248 at 779.047 kb on + strand, within MPMX19_05248 at 779.047 kb on + strand, within MPMX19_05248 at 779.048 kb on - strand, within MPMX19_05248 at 779.048 kb on - strand, within MPMX19_05248 at 779.048 kb on - strand, within MPMX19_05248 at 779.048 kb on - strand, within MPMX19_05248 at 779.048 kb on - strand, within MPMX19_05248 at 779.048 kb on - strand, within MPMX19_05248 at 779.048 kb on - strand, within MPMX19_05248 at 779.048 kb on - strand, within MPMX19_05248 at 779.048 kb on - strand, within MPMX19_05248 at 779.048 kb on - strand, within MPMX19_05248 at 779.048 kb on - strand, within MPMX19_05248 at 779.048 kb on - strand, within MPMX19_05248 at 779.048 kb on - strand, within MPMX19_05248 at 779.048 kb on - strand, within MPMX19_05248 at 779.048 kb on - strand, within MPMX19_05248 at 779.245 kb on + strand, within MPMX19_05248 at 779.245 kb on + strand, within MPMX19_05248 at 779.245 kb on + strand, within MPMX19_05248 at 779.245 kb on + strand, within MPMX19_05248 at 779.246 kb on - strand, within MPMX19_05248 at 779.489 kb on + strand, within MPMX19_05248 at 779.490 kb on - strand, within MPMX19_05248 at 779.490 kb on - strand, within MPMX19_05248 at 779.490 kb on - strand, within MPMX19_05248 at 779.490 kb on - strand, within MPMX19_05248 at 779.580 kb on + strand at 779.580 kb on + strand at 779.580 kb on + strand at 779.580 kb on + strand at 779.580 kb on + strand at 779.580 kb on + strand at 779.580 kb on + strand at 779.581 kb on - strand at 779.581 kb on - strand at 779.581 kb on - strand at 779.581 kb on - strand at 779.581 kb on - strand at 779.581 kb on - strand at 779.581 kb on - strand at 779.581 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 776,101 + -0.9 776,101 + +1.1 776,102 - +0.1 776,102 - -0.2 776,108 + -1.5 776,108 + +0.2 776,108 + -1.8 776,108 + +0.3 776,108 + +0.1 776,109 - -0.5 776,109 - -0.1 776,109 - +1.3 776,109 - -0.7 776,125 + -0.1 776,125 + -1.1 776,125 + +0.7 776,125 + -0.2 776,125 + -0.8 776,125 + -1.6 776,125 + +0.7 776,125 + -1.1 776,125 + -1.5 776,125 + -0.3 776,126 - -0.8 776,126 - -0.5 776,126 - -2.7 776,126 - +0.7 776,126 - -1.3 776,126 - +1.7 776,126 - -1.1 776,126 - -0.1 776,126 - -1.7 776,126 - -0.9 776,126 - -0.7 776,126 - -0.3 776,126 - +1.7 776,260 + -1.0 776,260 + +0.1 776,260 + -0.1 776,260 + -0.9 776,260 + -1.3 776,260 + -0.2 776,260 + -2.3 776,261 - +0.1 776,261 - -1.1 776,261 - -2.7 776,261 - -1.0 776,261 - +0.7 776,261 - -1.1 776,261 - +1.7 776,261 - -0.5 776,261 - -1.5 776,261 - -2.5 776,261 - -2.2 776,261 - -0.5 776,261 - +0.3 776,318 + -1.5 776,372 + -0.5 776,372 + -2.1 776,372 + +0.3 776,373 - -0.0 776,531 + MPMX19_05246 0.19 +0.1 776,532 - MPMX19_05246 0.19 -2.2 776,532 - MPMX19_05246 0.19 -1.3 776,687 + MPMX19_05246 0.41 -0.3 776,688 - MPMX19_05246 0.41 +0.7 776,702 + MPMX19_05246 0.43 +0.1 776,703 - MPMX19_05246 0.43 -0.3 776,816 + MPMX19_05246 0.60 -0.8 776,816 + MPMX19_05246 0.60 -0.7 776,816 + MPMX19_05246 0.60 -1.2 776,816 + MPMX19_05246 0.60 -1.2 776,817 - MPMX19_05246 0.60 -0.3 776,817 - MPMX19_05246 0.60 -2.9 776,817 - MPMX19_05246 0.60 -1.7 776,858 + MPMX19_05246 0.66 -1.9 776,858 + MPMX19_05246 0.66 +0.2 776,858 + MPMX19_05246 0.66 +0.3 776,859 - MPMX19_05246 0.66 -0.8 776,906 + MPMX19_05246 0.73 -0.3 776,906 + MPMX19_05246 0.73 -0.3 776,906 + MPMX19_05246 0.73 +0.9 776,906 + MPMX19_05246 0.73 +0.1 776,906 + MPMX19_05246 0.73 -1.1 776,906 + MPMX19_05246 0.73 +0.1 776,906 + MPMX19_05246 0.73 -0.5 776,906 + MPMX19_05246 0.73 -2.0 776,906 + MPMX19_05246 0.73 -0.1 776,906 + MPMX19_05246 0.73 -0.9 776,906 + MPMX19_05246 0.73 +0.3 776,906 + MPMX19_05246 0.73 +0.7 776,906 + MPMX19_05246 0.73 -1.3 776,906 + MPMX19_05246 0.73 +0.3 776,906 + MPMX19_05246 0.73 +0.1 776,906 + MPMX19_05246 0.73 -1.2 776,906 + MPMX19_05246 0.73 -0.3 776,906 + MPMX19_05246 0.73 -1.7 776,906 + MPMX19_05246 0.73 -0.9 776,906 + MPMX19_05246 0.73 -0.9 776,906 + MPMX19_05246 0.73 -0.7 776,907 + MPMX19_05246 0.73 +0.1 776,907 - MPMX19_05246 0.73 +1.2 776,907 - MPMX19_05246 0.73 -0.7 776,907 - MPMX19_05246 0.73 -0.9 776,907 - MPMX19_05246 0.73 -1.7 776,907 - MPMX19_05246 0.73 +0.1 776,907 - MPMX19_05246 0.73 -0.7 776,907 - MPMX19_05246 0.73 -1.7 776,907 - MPMX19_05246 0.73 -1.1 776,907 - MPMX19_05246 0.73 -0.3 776,907 - MPMX19_05246 0.73 +0.1 776,907 - MPMX19_05246 0.73 -0.3 776,907 - MPMX19_05246 0.73 -0.8 776,907 - MPMX19_05246 0.73 -0.3 776,907 - MPMX19_05246 0.73 +0.3 776,907 - MPMX19_05246 0.73 -1.6 776,907 - MPMX19_05246 0.73 +1.1 776,907 - MPMX19_05246 0.73 +0.2 776,907 - MPMX19_05246 0.73 -1.5 776,907 - MPMX19_05246 0.73 +2.1 777,028 + +0.2 777,029 - -0.0 777,029 - -0.9 777,029 - +2.1 777,029 - -0.9 777,064 + -0.1 777,064 + -1.1 777,064 + -0.8 777,064 + -1.5 777,064 + -1.9 777,064 + -0.3 777,065 - -0.7 777,065 - +0.1 777,157 + +1.7 777,157 + -0.3 777,157 + -0.9 777,157 + -2.7 777,158 - -0.8 777,158 - -0.7 777,158 - -0.5 777,346 + MPMX19_05247 0.17 +0.7 777,346 + MPMX19_05247 0.17 -1.8 777,346 + MPMX19_05247 0.17 -0.3 777,347 - MPMX19_05247 0.17 +0.1 777,461 + MPMX19_05247 0.24 -2.7 777,461 + MPMX19_05247 0.24 -0.5 777,461 + MPMX19_05247 0.24 -0.5 777,461 + MPMX19_05247 0.24 -0.3 777,462 - MPMX19_05247 0.24 -3.1 777,462 - MPMX19_05247 0.24 -0.3 777,462 - MPMX19_05247 0.24 -0.9 777,462 - MPMX19_05247 0.24 -0.8 777,462 - MPMX19_05247 0.24 -1.1 777,462 - MPMX19_05247 0.24 +0.7 777,462 - MPMX19_05247 0.24 -0.1 777,462 - MPMX19_05247 0.24 -0.7 778,762 - -0.3 778,762 - -0.3 778,820 + -1.1 778,820 + +0.9 778,821 - +0.1 778,821 - -1.7 779,047 + MPMX19_05248 0.28 -0.4 779,047 + MPMX19_05248 0.28 -1.5 779,047 + MPMX19_05248 0.28 +1.7 779,047 + MPMX19_05248 0.28 +1.7 779,047 + MPMX19_05248 0.28 +0.1 779,047 + MPMX19_05248 0.28 -1.9 779,047 + MPMX19_05248 0.28 -0.4 779,047 + MPMX19_05248 0.28 +0.1 779,047 + MPMX19_05248 0.28 +0.1 779,047 + MPMX19_05248 0.28 +0.8 779,047 + MPMX19_05248 0.28 +0.1 779,047 + MPMX19_05248 0.28 -0.5 779,047 + MPMX19_05248 0.28 +1.1 779,047 + MPMX19_05248 0.28 -0.3 779,048 - MPMX19_05248 0.28 +1.2 779,048 - MPMX19_05248 0.28 +0.3 779,048 - MPMX19_05248 0.28 +0.5 779,048 - MPMX19_05248 0.28 -0.9 779,048 - MPMX19_05248 0.28 -0.3 779,048 - MPMX19_05248 0.28 -0.9 779,048 - MPMX19_05248 0.28 +0.7 779,048 - MPMX19_05248 0.28 -0.3 779,048 - MPMX19_05248 0.28 +1.4 779,048 - MPMX19_05248 0.28 +0.1 779,048 - MPMX19_05248 0.28 +1.3 779,048 - MPMX19_05248 0.28 -0.9 779,048 - MPMX19_05248 0.28 +0.7 779,048 - MPMX19_05248 0.28 +2.7 779,048 - MPMX19_05248 0.28 -0.3 779,245 + MPMX19_05248 0.55 +1.1 779,245 + MPMX19_05248 0.55 -1.8 779,245 + MPMX19_05248 0.55 +0.7 779,245 + MPMX19_05248 0.55 +1.1 779,246 - MPMX19_05248 0.56 +0.7 779,489 + MPMX19_05248 0.89 +1.3 779,490 - MPMX19_05248 0.90 -0.3 779,490 - MPMX19_05248 0.90 -1.1 779,490 - MPMX19_05248 0.90 +0.2 779,490 - MPMX19_05248 0.90 +1.2 779,580 + -0.3 779,580 + +0.3 779,580 + +0.2 779,580 + -1.8 779,580 + -0.3 779,580 + +0.3 779,580 + -0.9 779,581 - +0.3 779,581 - -0.2 779,581 - -0.0 779,581 - -0.3 779,581 - -0.3 779,581 - -0.3 779,581 - +0.7 779,581 - -0.5
Or see this region's nucleotide sequence