Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05200 and MPMX19_05201 are separated by 48 nucleotides MPMX19_05201 and MPMX19_05202 overlap by 4 nucleotides
MPMX19_05200: MPMX19_05200 - Hydroxypyruvate reductase, at 704,203 to 705,213
_05200
MPMX19_05201: MPMX19_05201 - Hydroxycarboxylate dehydrogenase B, at 705,262 to 706,326
_05201
MPMX19_05202: MPMX19_05202 - Tryptophan synthase beta chain, at 706,323 to 707,603
_05202
Position (kb) 705
706
707 Strain fitness (log2 ratio) -2
-1
0
1 at 704.606 kb on - strand, within MPMX19_05200 at 704.606 kb on - strand, within MPMX19_05200 at 704.606 kb on - strand, within MPMX19_05200 at 705.617 kb on + strand, within MPMX19_05201 at 705.618 kb on - strand, within MPMX19_05201 at 705.911 kb on + strand, within MPMX19_05201 at 705.911 kb on + strand, within MPMX19_05201 at 705.911 kb on + strand, within MPMX19_05201 at 705.911 kb on + strand, within MPMX19_05201 at 705.911 kb on + strand, within MPMX19_05201 at 705.912 kb on - strand, within MPMX19_05201 at 705.912 kb on - strand, within MPMX19_05201 at 705.912 kb on - strand, within MPMX19_05201 at 705.951 kb on - strand, within MPMX19_05201 at 705.969 kb on + strand, within MPMX19_05201 at 706.164 kb on - strand, within MPMX19_05201 at 706.164 kb on - strand, within MPMX19_05201 at 706.164 kb on - strand, within MPMX19_05201 at 706.351 kb on + strand at 706.351 kb on + strand at 706.351 kb on + strand at 706.352 kb on - strand at 706.352 kb on - strand at 706.402 kb on + strand at 706.402 kb on + strand at 706.478 kb on + strand, within MPMX19_05202 at 706.478 kb on + strand, within MPMX19_05202 at 706.478 kb on + strand, within MPMX19_05202 at 706.479 kb on - strand, within MPMX19_05202 at 706.481 kb on - strand, within MPMX19_05202 at 706.489 kb on + strand, within MPMX19_05202 at 706.489 kb on + strand, within MPMX19_05202 at 706.489 kb on + strand, within MPMX19_05202 at 706.489 kb on + strand, within MPMX19_05202 at 706.490 kb on - strand, within MPMX19_05202 at 706.490 kb on - strand, within MPMX19_05202
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 704,606 - MPMX19_05200 0.40 +0.3 704,606 - MPMX19_05200 0.40 -0.7 704,606 - MPMX19_05200 0.40 -0.7 705,617 + MPMX19_05201 0.33 +0.2 705,618 - MPMX19_05201 0.33 -1.1 705,911 + MPMX19_05201 0.61 -0.8 705,911 + MPMX19_05201 0.61 -1.8 705,911 + MPMX19_05201 0.61 +0.7 705,911 + MPMX19_05201 0.61 -1.3 705,911 + MPMX19_05201 0.61 -1.3 705,912 - MPMX19_05201 0.61 -2.3 705,912 - MPMX19_05201 0.61 -0.9 705,912 - MPMX19_05201 0.61 -1.3 705,951 - MPMX19_05201 0.65 +0.7 705,969 + MPMX19_05201 0.66 -0.9 706,164 - MPMX19_05201 0.85 -1.2 706,164 - MPMX19_05201 0.85 -0.9 706,164 - MPMX19_05201 0.85 -0.9 706,351 + -0.1 706,351 + +0.1 706,351 + +0.1 706,352 - +0.7 706,352 - -2.0 706,402 + +0.1 706,402 + -0.5 706,478 + MPMX19_05202 0.12 -0.2 706,478 + MPMX19_05202 0.12 -0.7 706,478 + MPMX19_05202 0.12 +1.4 706,479 - MPMX19_05202 0.12 +0.7 706,481 - MPMX19_05202 0.12 +0.1 706,489 + MPMX19_05202 0.13 -1.4 706,489 + MPMX19_05202 0.13 +0.1 706,489 + MPMX19_05202 0.13 -0.9 706,489 + MPMX19_05202 0.13 +1.4 706,490 - MPMX19_05202 0.13 +0.9 706,490 - MPMX19_05202 0.13 -0.8
Or see this region's nucleotide sequence