Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05186 and MPMX19_05187 are separated by 15 nucleotides MPMX19_05187 and MPMX19_05188 are separated by 12 nucleotides MPMX19_05188 and MPMX19_05189 overlap by 7 nucleotides
MPMX19_05186: MPMX19_05186 - Thiosulfate sulfurtransferase GlpE, at 689,322 to 690,953
_05186
MPMX19_05187: MPMX19_05187 - 3-mercaptopropionate dioxygenase, at 690,969 to 691,607
_05187
MPMX19_05188: MPMX19_05188 - Aliphatic sulfonates import ATP-binding protein SsuB, at 691,620 to 692,414
_05188
MPMX19_05189: MPMX19_05189 - hypothetical protein, at 692,408 to 693,460
_05189
Position (kb) 691
692
693 Strain fitness (log2 ratio) -2
-1
0
1
2 at 690.677 kb on - strand, within MPMX19_05186 at 690.716 kb on - strand, within MPMX19_05186 at 690.716 kb on - strand, within MPMX19_05186 at 690.734 kb on - strand, within MPMX19_05186 at 690.734 kb on - strand, within MPMX19_05186 at 690.734 kb on - strand, within MPMX19_05186 at 690.734 kb on - strand, within MPMX19_05186 at 690.734 kb on - strand, within MPMX19_05186 at 690.734 kb on - strand, within MPMX19_05186 at 690.772 kb on + strand, within MPMX19_05186 at 690.772 kb on + strand, within MPMX19_05186 at 690.773 kb on - strand, within MPMX19_05186 at 690.773 kb on - strand, within MPMX19_05186 at 690.835 kb on + strand at 690.835 kb on + strand at 690.836 kb on - strand at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.108 kb on + strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.109 kb on - strand, within MPMX19_05187 at 691.258 kb on + strand, within MPMX19_05187 at 691.258 kb on + strand, within MPMX19_05187 at 691.258 kb on + strand, within MPMX19_05187 at 691.259 kb on - strand, within MPMX19_05187 at 691.376 kb on - strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.429 kb on + strand, within MPMX19_05187 at 691.984 kb on + strand, within MPMX19_05188 at 691.984 kb on + strand, within MPMX19_05188 at 691.984 kb on + strand, within MPMX19_05188 at 691.985 kb on - strand, within MPMX19_05188 at 692.110 kb on + strand, within MPMX19_05188 at 692.110 kb on + strand, within MPMX19_05188 at 692.111 kb on - strand, within MPMX19_05188 at 692.410 kb on - strand at 692.557 kb on - strand, within MPMX19_05189 at 692.557 kb on - strand, within MPMX19_05189 at 692.905 kb on - strand, within MPMX19_05189 at 692.970 kb on + strand, within MPMX19_05189 at 692.970 kb on + strand, within MPMX19_05189 at 692.971 kb on - strand, within MPMX19_05189
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 690,677 - MPMX19_05186 0.83 -0.5 690,716 - MPMX19_05186 0.85 -0.3 690,716 - MPMX19_05186 0.85 +1.7 690,734 - MPMX19_05186 0.87 -0.3 690,734 - MPMX19_05186 0.87 +0.7 690,734 - MPMX19_05186 0.87 -1.5 690,734 - MPMX19_05186 0.87 -0.0 690,734 - MPMX19_05186 0.87 +1.8 690,734 - MPMX19_05186 0.87 -0.3 690,772 + MPMX19_05186 0.89 -0.2 690,772 + MPMX19_05186 0.89 -0.7 690,773 - MPMX19_05186 0.89 -0.2 690,773 - MPMX19_05186 0.89 -2.2 690,835 + -0.7 690,835 + -0.9 690,836 - -0.9 691,108 + MPMX19_05187 0.22 +1.7 691,108 + MPMX19_05187 0.22 -0.7 691,108 + MPMX19_05187 0.22 -0.9 691,108 + MPMX19_05187 0.22 -0.9 691,108 + MPMX19_05187 0.22 -1.4 691,108 + MPMX19_05187 0.22 +0.9 691,108 + MPMX19_05187 0.22 -2.4 691,108 + MPMX19_05187 0.22 -0.8 691,109 - MPMX19_05187 0.22 -0.3 691,109 - MPMX19_05187 0.22 +1.1 691,109 - MPMX19_05187 0.22 -0.9 691,109 - MPMX19_05187 0.22 +0.3 691,109 - MPMX19_05187 0.22 -1.2 691,109 - MPMX19_05187 0.22 -0.9 691,109 - MPMX19_05187 0.22 -0.9 691,109 - MPMX19_05187 0.22 -1.8 691,109 - MPMX19_05187 0.22 -2.5 691,258 + MPMX19_05187 0.45 -0.9 691,258 + MPMX19_05187 0.45 -0.2 691,258 + MPMX19_05187 0.45 +0.7 691,259 - MPMX19_05187 0.45 +1.2 691,376 - MPMX19_05187 0.64 -0.5 691,429 + MPMX19_05187 0.72 +0.2 691,429 + MPMX19_05187 0.72 -1.6 691,429 + MPMX19_05187 0.72 -0.1 691,429 + MPMX19_05187 0.72 +2.7 691,429 + MPMX19_05187 0.72 +1.1 691,429 + MPMX19_05187 0.72 +1.1 691,429 + MPMX19_05187 0.72 +0.5 691,429 + MPMX19_05187 0.72 -1.2 691,984 + MPMX19_05188 0.46 -0.3 691,984 + MPMX19_05188 0.46 -2.2 691,984 + MPMX19_05188 0.46 -0.3 691,985 - MPMX19_05188 0.46 -1.5 692,110 + MPMX19_05188 0.62 -0.7 692,110 + MPMX19_05188 0.62 +1.1 692,111 - MPMX19_05188 0.62 -0.9 692,410 - -0.8 692,557 - MPMX19_05189 0.14 +0.7 692,557 - MPMX19_05189 0.14 -0.1 692,905 - MPMX19_05189 0.47 -0.3 692,970 + MPMX19_05189 0.53 +0.7 692,970 + MPMX19_05189 0.53 +0.3 692,971 - MPMX19_05189 0.53 -0.3
Or see this region's nucleotide sequence