Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05174 and MPMX19_05175 are separated by 30 nucleotides MPMX19_05175 and MPMX19_05176 are separated by 38 nucleotides MPMX19_05176 and MPMX19_05177 are separated by 27 nucleotides
MPMX19_05174: MPMX19_05174 - Putative acyl-CoA dehydrogenase YdbM, at 677,272 to 678,477
_05174
MPMX19_05175: MPMX19_05175 - hypothetical protein, at 678,508 to 679,524
_05175
MPMX19_05176: MPMX19_05176 - 4-hydroxy-3-prenylphenylpyruvate oxygenase/4-hydroxy-3-prenylbenzoate synthase, at 679,563 to 680,348
_05176
MPMX19_05177: MPMX19_05177 - Glyoxylate/hydroxypyruvate reductase A, at 680,376 to 681,335
_05177
Position (kb)
678
679
680 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 677.678 kb on + strand, within MPMX19_05174 at 677.972 kb on + strand, within MPMX19_05174 at 677.972 kb on + strand, within MPMX19_05174 at 677.973 kb on - strand, within MPMX19_05174 at 678.176 kb on + strand, within MPMX19_05174 at 678.176 kb on + strand, within MPMX19_05174 at 678.176 kb on + strand, within MPMX19_05174 at 678.176 kb on + strand, within MPMX19_05174 at 678.176 kb on + strand, within MPMX19_05174 at 678.176 kb on + strand, within MPMX19_05174 at 678.176 kb on + strand, within MPMX19_05174 at 678.176 kb on + strand, within MPMX19_05174 at 678.176 kb on + strand, within MPMX19_05174 at 678.176 kb on + strand, within MPMX19_05174 at 678.176 kb on + strand, within MPMX19_05174 at 678.176 kb on + strand, within MPMX19_05174 at 678.176 kb on + strand, within MPMX19_05174 at 678.176 kb on + strand, within MPMX19_05174 at 678.176 kb on + strand, within MPMX19_05174 at 678.176 kb on + strand, within MPMX19_05174 at 678.176 kb on + strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.177 kb on - strand, within MPMX19_05174 at 678.596 kb on + strand at 678.596 kb on + strand at 678.596 kb on + strand at 678.596 kb on + strand at 678.707 kb on + strand, within MPMX19_05175 at 678.707 kb on + strand, within MPMX19_05175 at 678.707 kb on + strand, within MPMX19_05175 at 678.707 kb on + strand, within MPMX19_05175 at 678.707 kb on + strand, within MPMX19_05175 at 678.708 kb on - strand, within MPMX19_05175 at 678.708 kb on - strand, within MPMX19_05175 at 678.708 kb on - strand, within MPMX19_05175 at 678.708 kb on - strand, within MPMX19_05175 at 678.708 kb on - strand, within MPMX19_05175 at 678.708 kb on - strand, within MPMX19_05175 at 678.737 kb on + strand, within MPMX19_05175 at 678.738 kb on - strand, within MPMX19_05175 at 679.622 kb on - strand at 679.906 kb on + strand, within MPMX19_05176 at 679.906 kb on + strand, within MPMX19_05176 at 679.906 kb on + strand, within MPMX19_05176 at 679.907 kb on - strand, within MPMX19_05176 at 679.907 kb on - strand, within MPMX19_05176 at 679.907 kb on - strand, within MPMX19_05176 at 679.907 kb on - strand, within MPMX19_05176 at 680.291 kb on - strand at 680.291 kb on - strand at 680.291 kb on - strand at 680.291 kb on - strand at 680.291 kb on - strand at 680.381 kb on - strand at 680.429 kb on - strand at 680.429 kb on - strand at 680.429 kb on - strand at 680.429 kb on - strand at 680.429 kb on - strand at 680.429 kb on - strand at 680.429 kb on - strand at 680.429 kb on - strand at 680.429 kb on - strand at 680.429 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 677,678 + MPMX19_05174 0.34 -1.2 677,972 + MPMX19_05174 0.58 +0.1 677,972 + MPMX19_05174 0.58 +1.7 677,973 - MPMX19_05174 0.58 -0.9 678,176 + MPMX19_05174 0.75 +0.1 678,176 + MPMX19_05174 0.75 +0.7 678,176 + MPMX19_05174 0.75 -2.0 678,176 + MPMX19_05174 0.75 -0.8 678,176 + MPMX19_05174 0.75 +0.7 678,176 + MPMX19_05174 0.75 -0.9 678,176 + MPMX19_05174 0.75 -1.2 678,176 + MPMX19_05174 0.75 +0.4 678,176 + MPMX19_05174 0.75 -0.8 678,176 + MPMX19_05174 0.75 +0.2 678,176 + MPMX19_05174 0.75 +0.2 678,176 + MPMX19_05174 0.75 -0.3 678,176 + MPMX19_05174 0.75 +0.0 678,176 + MPMX19_05174 0.75 -1.3 678,176 + MPMX19_05174 0.75 -0.7 678,176 + MPMX19_05174 0.75 -2.0 678,176 + MPMX19_05174 0.75 -0.3 678,177 - MPMX19_05174 0.75 -0.9 678,177 - MPMX19_05174 0.75 -0.2 678,177 - MPMX19_05174 0.75 -0.3 678,177 - MPMX19_05174 0.75 -1.7 678,177 - MPMX19_05174 0.75 +0.7 678,177 - MPMX19_05174 0.75 +0.2 678,177 - MPMX19_05174 0.75 -0.9 678,177 - MPMX19_05174 0.75 -0.3 678,177 - MPMX19_05174 0.75 +0.2 678,177 - MPMX19_05174 0.75 -0.9 678,177 - MPMX19_05174 0.75 -0.7 678,177 - MPMX19_05174 0.75 +0.7 678,177 - MPMX19_05174 0.75 -1.9 678,177 - MPMX19_05174 0.75 -0.3 678,177 - MPMX19_05174 0.75 -0.1 678,177 - MPMX19_05174 0.75 -0.9 678,177 - MPMX19_05174 0.75 +0.7 678,177 - MPMX19_05174 0.75 -0.7 678,177 - MPMX19_05174 0.75 -0.7 678,177 - MPMX19_05174 0.75 -1.7 678,177 - MPMX19_05174 0.75 +0.1 678,177 - MPMX19_05174 0.75 -0.9 678,177 - MPMX19_05174 0.75 -2.0 678,177 - MPMX19_05174 0.75 -0.7 678,177 - MPMX19_05174 0.75 +0.1 678,596 + +0.1 678,596 + +0.3 678,596 + +0.7 678,596 + +0.1 678,707 + MPMX19_05175 0.20 -0.3 678,707 + MPMX19_05175 0.20 +1.7 678,707 + MPMX19_05175 0.20 -0.8 678,707 + MPMX19_05175 0.20 -1.1 678,707 + MPMX19_05175 0.20 -0.9 678,708 - MPMX19_05175 0.20 -0.7 678,708 - MPMX19_05175 0.20 -2.0 678,708 - MPMX19_05175 0.20 -1.7 678,708 - MPMX19_05175 0.20 -1.0 678,708 - MPMX19_05175 0.20 -1.3 678,708 - MPMX19_05175 0.20 +0.7 678,737 + MPMX19_05175 0.23 -0.7 678,738 - MPMX19_05175 0.23 -1.4 679,622 - +0.3 679,906 + MPMX19_05176 0.44 +0.3 679,906 + MPMX19_05176 0.44 +0.9 679,906 + MPMX19_05176 0.44 -0.7 679,907 - MPMX19_05176 0.44 +0.3 679,907 - MPMX19_05176 0.44 -1.1 679,907 - MPMX19_05176 0.44 -1.7 679,907 - MPMX19_05176 0.44 +0.1 680,291 - -0.1 680,291 - -0.0 680,291 - -3.0 680,291 - +1.7 680,291 - -1.4 680,381 - -1.7 680,429 - -0.9 680,429 - -0.1 680,429 - +0.7 680,429 - -0.7 680,429 - +0.1 680,429 - +0.1 680,429 - +2.1 680,429 - +0.1 680,429 - -0.3 680,429 - +1.7
Or see this region's nucleotide sequence