Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04966

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04965 and MPMX19_04966 are separated by 183 nucleotidesMPMX19_04966 and MPMX19_04967 overlap by 4 nucleotides MPMX19_04965: MPMX19_04965 - Lipopolysaccharide assembly protein B, at 429,004 to 431,145 _04965 MPMX19_04966: MPMX19_04966 - hypothetical protein, at 431,329 to 432,492 _04966 MPMX19_04967: MPMX19_04967 - ADP-heptose--LPS heptosyltransferase 2, at 432,489 to 433,499 _04967 Position (kb) 431 432 433Strain fitness (log2 ratio) -2 -1 0 1 2at 430.374 kb on - strand, within MPMX19_04965at 430.679 kb on + strand, within MPMX19_04965at 430.679 kb on + strand, within MPMX19_04965at 430.679 kb on + strand, within MPMX19_04965at 430.752 kb on - strand, within MPMX19_04965at 430.838 kb on + strand, within MPMX19_04965at 430.838 kb on + strand, within MPMX19_04965at 430.839 kb on - strand, within MPMX19_04965at 430.839 kb on - strand, within MPMX19_04965at 430.839 kb on - strand, within MPMX19_04965at 430.839 kb on - strand, within MPMX19_04965at 430.946 kb on + strandat 430.946 kb on + strandat 430.947 kb on - strandat 431.087 kb on + strandat 431.087 kb on + strandat 431.087 kb on + strandat 431.087 kb on + strandat 431.087 kb on + strandat 431.087 kb on + strandat 431.087 kb on + strandat 431.087 kb on + strandat 431.088 kb on - strandat 431.088 kb on - strandat 431.088 kb on - strandat 431.088 kb on - strandat 431.088 kb on - strandat 431.088 kb on - strandat 431.088 kb on - strandat 431.088 kb on - strandat 431.307 kb on + strandat 431.307 kb on + strandat 431.307 kb on + strandat 431.307 kb on + strandat 431.307 kb on + strandat 431.307 kb on + strandat 431.307 kb on + strandat 431.307 kb on + strandat 431.307 kb on + strandat 433.436 kb on + strandat 433.483 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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430,374 - MPMX19_04965 0.64 -0.1
430,679 + MPMX19_04965 0.78 +0.7
430,679 + MPMX19_04965 0.78 -0.3
430,679 + MPMX19_04965 0.78 -0.3
430,752 - MPMX19_04965 0.82 -0.9
430,838 + MPMX19_04965 0.86 -0.3
430,838 + MPMX19_04965 0.86 -0.1
430,839 - MPMX19_04965 0.86 -0.8
430,839 - MPMX19_04965 0.86 -0.7
430,839 - MPMX19_04965 0.86 -0.9
430,839 - MPMX19_04965 0.86 +0.1
430,946 + -0.3
430,946 + -1.6
430,947 - -0.3
431,087 + +2.2
431,087 + -1.3
431,087 + +0.5
431,087 + -0.3
431,087 + +0.1
431,087 + -1.2
431,087 + -2.2
431,087 + -0.7
431,088 - -0.7
431,088 - -0.3
431,088 - -1.2
431,088 - +0.1
431,088 - -1.7
431,088 - -0.8
431,088 - -0.1
431,088 - +0.1
431,307 + +0.7
431,307 + +0.8
431,307 + +1.1
431,307 + -1.2
431,307 + +0.2
431,307 + -1.3
431,307 + -0.9
431,307 + -0.1
431,307 + +0.7
433,436 + +0.1
433,483 + +0.7

Or see this region's nucleotide sequence