Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04798 and MPMX19_04799 are separated by 279 nucleotides MPMX19_04799 and MPMX19_04800 are separated by 3 nucleotides MPMX19_04800 and MPMX19_04801 are separated by 325 nucleotides
MPMX19_04798: MPMX19_04798 - hypothetical protein, at 198,389 to 199,729
_04798
MPMX19_04799: MPMX19_04799 - D-inositol-3-phosphate glycosyltransferase, at 200,009 to 201,121
_04799
MPMX19_04800: MPMX19_04800 - hypothetical protein, at 201,125 to 201,718
_04800
MPMX19_04801: MPMX19_04801 - D-inositol-3-phosphate glycosyltransferase, at 202,044 to 203,219
_04801
Position (kb) 200
201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 199.065 kb on + strand, within MPMX19_04798 at 199.098 kb on + strand, within MPMX19_04798 at 199.098 kb on + strand, within MPMX19_04798 at 199.098 kb on + strand, within MPMX19_04798 at 199.098 kb on + strand, within MPMX19_04798 at 199.098 kb on + strand, within MPMX19_04798 at 199.098 kb on + strand, within MPMX19_04798 at 199.098 kb on + strand, within MPMX19_04798 at 199.099 kb on - strand, within MPMX19_04798 at 199.099 kb on - strand, within MPMX19_04798 at 199.099 kb on - strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on + strand, within MPMX19_04798 at 199.143 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.144 kb on - strand, within MPMX19_04798 at 199.203 kb on + strand, within MPMX19_04798 at 199.203 kb on + strand, within MPMX19_04798 at 199.203 kb on + strand, within MPMX19_04798 at 199.203 kb on + strand, within MPMX19_04798 at 199.203 kb on + strand, within MPMX19_04798 at 199.203 kb on + strand, within MPMX19_04798 at 199.203 kb on + strand, within MPMX19_04798 at 199.203 kb on + strand, within MPMX19_04798 at 199.204 kb on - strand, within MPMX19_04798 at 199.204 kb on - strand, within MPMX19_04798 at 199.204 kb on - strand, within MPMX19_04798 at 199.204 kb on - strand, within MPMX19_04798 at 199.258 kb on - strand, within MPMX19_04798 at 199.276 kb on + strand, within MPMX19_04798 at 199.276 kb on + strand, within MPMX19_04798 at 199.276 kb on + strand, within MPMX19_04798 at 199.277 kb on - strand, within MPMX19_04798 at 199.277 kb on - strand, within MPMX19_04798 at 199.277 kb on - strand, within MPMX19_04798 at 199.277 kb on - strand, within MPMX19_04798 at 199.435 kb on - strand, within MPMX19_04798 at 199.435 kb on - strand, within MPMX19_04798 at 199.438 kb on + strand, within MPMX19_04798 at 199.439 kb on - strand, within MPMX19_04798 at 199.439 kb on - strand, within MPMX19_04798 at 199.451 kb on + strand, within MPMX19_04798 at 199.515 kb on + strand, within MPMX19_04798 at 199.515 kb on + strand, within MPMX19_04798 at 199.516 kb on - strand, within MPMX19_04798 at 199.516 kb on - strand, within MPMX19_04798 at 199.725 kb on + strand at 199.725 kb on + strand at 199.725 kb on + strand at 199.725 kb on + strand at 199.726 kb on - strand at 199.726 kb on - strand at 199.726 kb on - strand at 199.726 kb on - strand at 199.726 kb on - strand at 199.726 kb on - strand at 199.733 kb on - strand at 199.763 kb on + strand at 199.795 kb on - strand at 200.031 kb on + strand at 200.031 kb on + strand at 200.032 kb on - strand at 200.043 kb on + strand at 200.043 kb on + strand at 200.043 kb on + strand at 200.043 kb on + strand at 200.043 kb on + strand at 200.044 kb on - strand at 200.077 kb on + strand at 200.077 kb on + strand at 200.077 kb on + strand at 200.077 kb on + strand at 200.078 kb on - strand at 200.508 kb on + strand, within MPMX19_04799 at 200.508 kb on + strand, within MPMX19_04799 at 200.508 kb on + strand, within MPMX19_04799 at 200.508 kb on + strand, within MPMX19_04799 at 200.509 kb on - strand, within MPMX19_04799 at 200.509 kb on - strand, within MPMX19_04799 at 200.509 kb on - strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.838 kb on + strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.839 kb on - strand, within MPMX19_04799 at 200.920 kb on - strand, within MPMX19_04799 at 200.920 kb on - strand, within MPMX19_04799 at 200.972 kb on + strand, within MPMX19_04799 at 200.972 kb on + strand, within MPMX19_04799 at 200.973 kb on - strand, within MPMX19_04799 at 201.027 kb on + strand at 201.028 kb on - strand at 201.129 kb on + strand at 201.129 kb on + strand at 201.130 kb on - strand at 201.130 kb on - strand at 201.130 kb on - strand at 201.143 kb on + strand at 201.144 kb on - strand at 201.144 kb on - strand at 201.192 kb on + strand, within MPMX19_04800 at 201.192 kb on + strand, within MPMX19_04800 at 201.252 kb on + strand, within MPMX19_04800 at 201.253 kb on - strand, within MPMX19_04800 at 201.258 kb on + strand, within MPMX19_04800 at 201.304 kb on + strand, within MPMX19_04800 at 201.304 kb on + strand, within MPMX19_04800 at 201.304 kb on + strand, within MPMX19_04800 at 201.305 kb on - strand, within MPMX19_04800 at 201.305 kb on - strand, within MPMX19_04800 at 201.305 kb on - strand, within MPMX19_04800 at 201.305 kb on - strand, within MPMX19_04800 at 201.306 kb on + strand, within MPMX19_04800 at 201.307 kb on - strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.345 kb on + strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.346 kb on - strand, within MPMX19_04800 at 201.431 kb on - strand, within MPMX19_04800 at 201.704 kb on + strand at 201.704 kb on + strand at 201.705 kb on - strand at 201.757 kb on - strand at 201.757 kb on - strand at 201.757 kb on - strand at 201.809 kb on + strand at 201.810 kb on - strand at 201.810 kb on - strand at 201.872 kb on + strand at 201.872 kb on + strand at 201.872 kb on + strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.873 kb on - strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.876 kb on + strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.877 kb on - strand at 201.900 kb on - strand at 201.931 kb on + strand at 201.931 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 199,065 + MPMX19_04798 0.50 +0.4 199,098 + MPMX19_04798 0.53 -0.2 199,098 + MPMX19_04798 0.53 +0.8 199,098 + MPMX19_04798 0.53 -0.4 199,098 + MPMX19_04798 0.53 +1.6 199,098 + MPMX19_04798 0.53 -0.1 199,098 + MPMX19_04798 0.53 -1.0 199,098 + MPMX19_04798 0.53 +0.2 199,099 - MPMX19_04798 0.53 -1.7 199,099 - MPMX19_04798 0.53 -0.7 199,099 - MPMX19_04798 0.53 -1.0 199,143 + MPMX19_04798 0.56 +1.6 199,143 + MPMX19_04798 0.56 -1.2 199,143 + MPMX19_04798 0.56 -0.7 199,143 + MPMX19_04798 0.56 +1.0 199,143 + MPMX19_04798 0.56 -0.2 199,143 + MPMX19_04798 0.56 -0.5 199,143 + MPMX19_04798 0.56 -1.2 199,143 + MPMX19_04798 0.56 -1.5 199,143 + MPMX19_04798 0.56 -0.1 199,143 + MPMX19_04798 0.56 +2.0 199,143 + MPMX19_04798 0.56 -0.4 199,143 + MPMX19_04798 0.56 -0.7 199,143 + MPMX19_04798 0.56 +0.0 199,143 + MPMX19_04798 0.56 +0.0 199,143 - MPMX19_04798 0.56 +0.6 199,144 - MPMX19_04798 0.56 +0.3 199,144 - MPMX19_04798 0.56 -0.9 199,144 - MPMX19_04798 0.56 -0.2 199,144 - MPMX19_04798 0.56 +0.0 199,144 - MPMX19_04798 0.56 -1.2 199,144 - MPMX19_04798 0.56 +0.6 199,144 - MPMX19_04798 0.56 -0.7 199,144 - MPMX19_04798 0.56 -0.7 199,144 - MPMX19_04798 0.56 -0.4 199,144 - MPMX19_04798 0.56 -0.5 199,144 - MPMX19_04798 0.56 +0.2 199,144 - MPMX19_04798 0.56 +0.2 199,144 - MPMX19_04798 0.56 -0.5 199,144 - MPMX19_04798 0.56 -1.5 199,144 - MPMX19_04798 0.56 +0.0 199,144 - MPMX19_04798 0.56 -0.4 199,144 - MPMX19_04798 0.56 +0.8 199,203 + MPMX19_04798 0.61 +0.6 199,203 + MPMX19_04798 0.61 -0.7 199,203 + MPMX19_04798 0.61 +0.0 199,203 + MPMX19_04798 0.61 +1.3 199,203 + MPMX19_04798 0.61 -1.0 199,203 + MPMX19_04798 0.61 -0.2 199,203 + MPMX19_04798 0.61 -0.2 199,203 + MPMX19_04798 0.61 -1.5 199,204 - MPMX19_04798 0.61 -0.6 199,204 - MPMX19_04798 0.61 -1.6 199,204 - MPMX19_04798 0.61 +1.2 199,204 - MPMX19_04798 0.61 +2.0 199,258 - MPMX19_04798 0.65 -1.5 199,276 + MPMX19_04798 0.66 -0.5 199,276 + MPMX19_04798 0.66 +0.8 199,276 + MPMX19_04798 0.66 +0.5 199,277 - MPMX19_04798 0.66 -2.0 199,277 - MPMX19_04798 0.66 +0.4 199,277 - MPMX19_04798 0.66 +2.2 199,277 - MPMX19_04798 0.66 -2.8 199,435 - MPMX19_04798 0.78 -0.7 199,435 - MPMX19_04798 0.78 +0.3 199,438 + MPMX19_04798 0.78 +1.6 199,439 - MPMX19_04798 0.78 +0.6 199,439 - MPMX19_04798 0.78 +0.4 199,451 + MPMX19_04798 0.79 +0.5 199,515 + MPMX19_04798 0.84 +0.5 199,515 + MPMX19_04798 0.84 +1.1 199,516 - MPMX19_04798 0.84 -0.4 199,516 - MPMX19_04798 0.84 -0.7 199,725 + -1.2 199,725 + +0.3 199,725 + +1.4 199,725 + -0.7 199,726 - +0.2 199,726 - +1.0 199,726 - +0.2 199,726 - -0.5 199,726 - +0.4 199,726 - -1.3 199,733 - -0.7 199,763 + +0.3 199,795 - +1.4 200,031 + -1.2 200,031 + +0.0 200,032 - +3.6 200,043 + -1.0 200,043 + -1.2 200,043 + +0.9 200,043 + -0.7 200,043 + +0.2 200,044 - +0.9 200,077 + -1.0 200,077 + -0.2 200,077 + +0.3 200,077 + -0.7 200,078 - +0.5 200,508 + MPMX19_04799 0.45 -1.2 200,508 + MPMX19_04799 0.45 +0.0 200,508 + MPMX19_04799 0.45 -1.1 200,508 + MPMX19_04799 0.45 -0.2 200,509 - MPMX19_04799 0.45 -1.0 200,509 - MPMX19_04799 0.45 -0.8 200,509 - MPMX19_04799 0.45 -0.7 200,838 + MPMX19_04799 0.74 -1.2 200,838 + MPMX19_04799 0.74 -0.4 200,838 + MPMX19_04799 0.74 -1.0 200,838 + MPMX19_04799 0.74 +0.3 200,838 + MPMX19_04799 0.74 +0.0 200,838 + MPMX19_04799 0.74 -0.5 200,838 + MPMX19_04799 0.74 -0.2 200,839 - MPMX19_04799 0.75 +0.0 200,839 - MPMX19_04799 0.75 -1.2 200,839 - MPMX19_04799 0.75 +0.6 200,839 - MPMX19_04799 0.75 -2.0 200,839 - MPMX19_04799 0.75 -0.7 200,839 - MPMX19_04799 0.75 -0.5 200,839 - MPMX19_04799 0.75 -0.4 200,920 - MPMX19_04799 0.82 -1.4 200,920 - MPMX19_04799 0.82 -2.2 200,972 + MPMX19_04799 0.87 +0.3 200,972 + MPMX19_04799 0.87 -0.1 200,973 - MPMX19_04799 0.87 -1.4 201,027 + -0.4 201,028 - -1.7 201,129 + +1.2 201,129 + -0.7 201,130 - -1.2 201,130 - -1.7 201,130 - +0.6 201,143 + -0.5 201,144 - -0.7 201,144 - -0.7 201,192 + MPMX19_04800 0.11 -1.0 201,192 + MPMX19_04800 0.11 -1.9 201,252 + MPMX19_04800 0.21 -1.4 201,253 - MPMX19_04800 0.22 -1.4 201,258 + MPMX19_04800 0.22 -1.0 201,304 + MPMX19_04800 0.30 +0.7 201,304 + MPMX19_04800 0.30 +0.3 201,304 + MPMX19_04800 0.30 +0.8 201,305 - MPMX19_04800 0.30 -0.4 201,305 - MPMX19_04800 0.30 -2.0 201,305 - MPMX19_04800 0.30 -0.5 201,305 - MPMX19_04800 0.30 +0.3 201,306 + MPMX19_04800 0.30 -0.8 201,307 - MPMX19_04800 0.31 -1.2 201,345 + MPMX19_04800 0.37 +0.0 201,345 + MPMX19_04800 0.37 +0.1 201,345 + MPMX19_04800 0.37 +1.0 201,345 + MPMX19_04800 0.37 -0.1 201,345 + MPMX19_04800 0.37 +0.3 201,345 + MPMX19_04800 0.37 -1.0 201,345 + MPMX19_04800 0.37 -0.7 201,345 + MPMX19_04800 0.37 -2.5 201,345 + MPMX19_04800 0.37 -1.4 201,346 - MPMX19_04800 0.37 +0.1 201,346 - MPMX19_04800 0.37 -2.4 201,346 - MPMX19_04800 0.37 +0.8 201,346 - MPMX19_04800 0.37 -1.2 201,346 - MPMX19_04800 0.37 +0.0 201,346 - MPMX19_04800 0.37 +1.2 201,346 - MPMX19_04800 0.37 -0.7 201,346 - MPMX19_04800 0.37 -0.7 201,346 - MPMX19_04800 0.37 -0.6 201,346 - MPMX19_04800 0.37 +0.0 201,346 - MPMX19_04800 0.37 -1.2 201,346 - MPMX19_04800 0.37 -0.5 201,346 - MPMX19_04800 0.37 -0.4 201,431 - MPMX19_04800 0.52 -0.7 201,704 + +0.3 201,704 + -1.4 201,705 - -0.5 201,757 - -2.8 201,757 - +0.1 201,757 - -1.7 201,809 + -0.9 201,810 - -2.9 201,810 - +0.6 201,872 + +0.6 201,872 + +1.0 201,872 + -0.9 201,873 - -1.0 201,873 - -1.5 201,873 - -1.2 201,873 - +1.0 201,873 - -0.7 201,873 - -2.2 201,873 - -2.8 201,873 - +0.3 201,873 - -0.7 201,876 + -0.7 201,876 + +1.6 201,876 + -1.5 201,876 + -0.4 201,876 + -0.8 201,876 + +0.5 201,876 + -0.7 201,876 + -1.5 201,876 + +0.1 201,876 + +0.2 201,876 + -1.2 201,876 + +0.2 201,876 + -0.9 201,876 + +0.6 201,876 + -0.3 201,876 + -0.1 201,876 + -0.5 201,877 - -0.3 201,877 - -1.4 201,877 - +0.3 201,877 - -1.4 201,877 - -2.7 201,877 - -1.0 201,877 - -0.4 201,877 - -0.4 201,877 - +1.3 201,877 - -0.7 201,900 - +0.3 201,931 + +0.6 201,931 + -1.0
Or see this region's nucleotide sequence