Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04687

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04685 and MPMX19_04686 are separated by 37 nucleotidesMPMX19_04686 and MPMX19_04687 are separated by 42 nucleotidesMPMX19_04687 and MPMX19_04688 overlap by 4 nucleotidesMPMX19_04688 and MPMX19_04689 are separated by 4 nucleotides MPMX19_04685: MPMX19_04685 - D-hydantoinase, at 70,766 to 72,202 _04685 MPMX19_04686: MPMX19_04686 - Maleate isomerase, at 72,240 to 72,986 _04686 MPMX19_04687: MPMX19_04687 - Atrazine chlorohydrolase, at 73,029 to 74,363 _04687 MPMX19_04688: MPMX19_04688 - Bicarbonate transport ATP-binding protein CmpD, at 74,360 to 75,178 _04688 MPMX19_04689: MPMX19_04689 - Putative aliphatic sulfonates transport permease protein SsuC, at 75,183 to 76,004 _04689 Position (kb) 73 74 75Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 72.343 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.550 kb on + strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.551 kb on - strand, within MPMX19_04686at 72.586 kb on + strand, within MPMX19_04686at 72.586 kb on + strand, within MPMX19_04686at 72.586 kb on + strand, within MPMX19_04686at 72.586 kb on + strand, within MPMX19_04686at 72.587 kb on - strand, within MPMX19_04686at 72.997 kb on + strandat 72.997 kb on + strandat 72.998 kb on - strandat 73.030 kb on + strandat 73.030 kb on + strandat 73.030 kb on + strandat 73.030 kb on + strandat 73.031 kb on - strandat 73.031 kb on - strandat 73.031 kb on - strandat 73.564 kb on + strand, within MPMX19_04687at 73.565 kb on - strand, within MPMX19_04687at 73.565 kb on - strand, within MPMX19_04687at 73.565 kb on - strand, within MPMX19_04687at 73.565 kb on - strand, within MPMX19_04687at 74.095 kb on + strand, within MPMX19_04687at 74.096 kb on - strand, within MPMX19_04687at 74.096 kb on - strand, within MPMX19_04687at 74.820 kb on + strand, within MPMX19_04688at 74.820 kb on + strand, within MPMX19_04688at 74.820 kb on + strand, within MPMX19_04688at 74.821 kb on - strand, within MPMX19_04688at 74.821 kb on - strand, within MPMX19_04688at 74.821 kb on - strand, within MPMX19_04688at 74.821 kb on - strand, within MPMX19_04688at 74.821 kb on - strand, within MPMX19_04688at 74.821 kb on - strand, within MPMX19_04688at 74.821 kb on - strand, within MPMX19_04688at 74.821 kb on - strand, within MPMX19_04688at 75.268 kb on + strand, within MPMX19_04689at 75.268 kb on + strand, within MPMX19_04689at 75.325 kb on + strand, within MPMX19_04689at 75.325 kb on + strand, within MPMX19_04689at 75.325 kb on + strand, within MPMX19_04689at 75.326 kb on - strand, within MPMX19_04689at 75.326 kb on - strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.328 kb on + strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.329 kb on - strand, within MPMX19_04689at 75.346 kb on + strand, within MPMX19_04689at 75.346 kb on + strand, within MPMX19_04689at 75.346 kb on + strand, within MPMX19_04689at 75.347 kb on - strand, within MPMX19_04689

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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72,343 + MPMX19_04686 0.14 -1.4
72,550 + MPMX19_04686 0.41 -1.2
72,550 + MPMX19_04686 0.41 +0.6
72,550 + MPMX19_04686 0.41 +0.6
72,550 + MPMX19_04686 0.41 -0.2
72,550 + MPMX19_04686 0.41 +0.1
72,550 + MPMX19_04686 0.41 +1.1
72,550 + MPMX19_04686 0.41 -1.7
72,550 + MPMX19_04686 0.41 -1.5
72,551 - MPMX19_04686 0.42 -1.2
72,551 - MPMX19_04686 0.42 -0.8
72,551 - MPMX19_04686 0.42 -1.3
72,551 - MPMX19_04686 0.42 -0.5
72,551 - MPMX19_04686 0.42 -0.4
72,551 - MPMX19_04686 0.42 -1.8
72,551 - MPMX19_04686 0.42 -1.8
72,551 - MPMX19_04686 0.42 -0.7
72,551 - MPMX19_04686 0.42 +0.9
72,586 + MPMX19_04686 0.46 -0.2
72,586 + MPMX19_04686 0.46 +0.1
72,586 + MPMX19_04686 0.46 -0.2
72,586 + MPMX19_04686 0.46 -2.3
72,587 - MPMX19_04686 0.46 -1.6
72,997 + +0.1
72,997 + -1.1
72,998 - -0.9
73,030 + -2.1
73,030 + -1.7
73,030 + -2.0
73,030 + -1.2
73,031 - +0.4
73,031 - +0.3
73,031 - -0.4
73,564 + MPMX19_04687 0.40 -0.4
73,565 - MPMX19_04687 0.40 -2.4
73,565 - MPMX19_04687 0.40 -0.4
73,565 - MPMX19_04687 0.40 -0.2
73,565 - MPMX19_04687 0.40 -2.2
74,095 + MPMX19_04687 0.80 -1.7
74,096 - MPMX19_04687 0.80 -0.5
74,096 - MPMX19_04687 0.80 +0.9
74,820 + MPMX19_04688 0.56 -1.4
74,820 + MPMX19_04688 0.56 +1.1
74,820 + MPMX19_04688 0.56 +1.4
74,821 - MPMX19_04688 0.56 +0.3
74,821 - MPMX19_04688 0.56 +1.1
74,821 - MPMX19_04688 0.56 +0.9
74,821 - MPMX19_04688 0.56 -0.7
74,821 - MPMX19_04688 0.56 -0.5
74,821 - MPMX19_04688 0.56 +0.1
74,821 - MPMX19_04688 0.56 -0.7
74,821 - MPMX19_04688 0.56 -3.3
75,268 + MPMX19_04689 0.10 +0.8
75,268 + MPMX19_04689 0.10 -0.4
75,325 + MPMX19_04689 0.17 -0.8
75,325 + MPMX19_04689 0.17 -1.2
75,325 + MPMX19_04689 0.17 -0.4
75,326 - MPMX19_04689 0.17 -1.7
75,326 - MPMX19_04689 0.17 -0.4
75,328 + MPMX19_04689 0.18 -0.2
75,328 + MPMX19_04689 0.18 -1.7
75,328 + MPMX19_04689 0.18 -0.9
75,328 + MPMX19_04689 0.18 -0.5
75,328 + MPMX19_04689 0.18 +1.1
75,328 + MPMX19_04689 0.18 +0.8
75,328 + MPMX19_04689 0.18 -0.7
75,328 + MPMX19_04689 0.18 +0.6
75,328 + MPMX19_04689 0.18 -0.5
75,328 + MPMX19_04689 0.18 +0.1
75,328 + MPMX19_04689 0.18 -0.4
75,328 + MPMX19_04689 0.18 +1.9
75,328 + MPMX19_04689 0.18 -0.7
75,328 + MPMX19_04689 0.18 +0.6
75,328 + MPMX19_04689 0.18 -0.6
75,328 + MPMX19_04689 0.18 -0.9
75,328 + MPMX19_04689 0.18 +0.1
75,328 + MPMX19_04689 0.18 -0.2
75,328 + MPMX19_04689 0.18 -0.9
75,328 + MPMX19_04689 0.18 -0.1
75,328 + MPMX19_04689 0.18 -2.1
75,328 + MPMX19_04689 0.18 +1.2
75,328 + MPMX19_04689 0.18 -0.5
75,328 + MPMX19_04689 0.18 -2.1
75,328 + MPMX19_04689 0.18 +0.1
75,328 + MPMX19_04689 0.18 -1.7
75,328 + MPMX19_04689 0.18 -0.8
75,329 - MPMX19_04689 0.18 -0.8
75,329 - MPMX19_04689 0.18 -0.2
75,329 - MPMX19_04689 0.18 +0.1
75,329 - MPMX19_04689 0.18 -0.7
75,329 - MPMX19_04689 0.18 -0.9
75,329 - MPMX19_04689 0.18 -1.0
75,329 - MPMX19_04689 0.18 -1.7
75,329 - MPMX19_04689 0.18 -0.5
75,329 - MPMX19_04689 0.18 +0.5
75,329 - MPMX19_04689 0.18 +0.8
75,329 - MPMX19_04689 0.18 +1.1
75,329 - MPMX19_04689 0.18 +0.4
75,329 - MPMX19_04689 0.18 -0.2
75,329 - MPMX19_04689 0.18 -0.4
75,329 - MPMX19_04689 0.18 -0.4
75,329 - MPMX19_04689 0.18 +0.4
75,329 - MPMX19_04689 0.18 -1.5
75,346 + MPMX19_04689 0.20 -0.9
75,346 + MPMX19_04689 0.20 -0.4
75,346 + MPMX19_04689 0.20 -0.4
75,347 - MPMX19_04689 0.20 +1.2

Or see this region's nucleotide sequence