Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04519

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04518 and MPMX19_04519 are separated by 431 nucleotidesMPMX19_04519 and MPMX19_04520 are separated by 10 nucleotidesMPMX19_04520 and MPMX19_04521 overlap by 4 nucleotidesMPMX19_04521 and MPMX19_04522 overlap by 4 nucleotides MPMX19_04518: MPMX19_04518 - Acetyl-CoA:oxalate CoA-transferase, at 890,939 to 892,141 _04518 MPMX19_04519: MPMX19_04519 - hypothetical protein, at 892,573 to 893,742 _04519 MPMX19_04520: MPMX19_04520 - hypothetical protein, at 893,753 to 894,184 _04520 MPMX19_04521: MPMX19_04521 - Bifunctional protein PaaZ, at 894,181 to 894,642 _04521 MPMX19_04522: MPMX19_04522 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 894,639 to 895,397 _04522 Position (kb) 892 893 894Strain fitness (log2 ratio) -2 -1 0 1 2 3at 891.723 kb on + strand, within MPMX19_04518at 891.759 kb on + strand, within MPMX19_04518at 891.759 kb on + strand, within MPMX19_04518at 891.759 kb on + strand, within MPMX19_04518at 891.759 kb on + strand, within MPMX19_04518at 891.759 kb on + strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.760 kb on - strand, within MPMX19_04518at 891.795 kb on + strand, within MPMX19_04518at 891.795 kb on + strand, within MPMX19_04518at 891.911 kb on - strand, within MPMX19_04518at 891.911 kb on - strand, within MPMX19_04518at 891.945 kb on + strand, within MPMX19_04518at 891.946 kb on - strand, within MPMX19_04518at 892.056 kb on + strandat 892.057 kb on - strandat 892.274 kb on + strandat 892.386 kb on - strandat 892.428 kb on + strandat 892.428 kb on + strandat 892.429 kb on - strandat 892.612 kb on + strandat 892.612 kb on + strandat 892.613 kb on - strandat 892.789 kb on + strand, within MPMX19_04519at 892.789 kb on + strand, within MPMX19_04519at 892.789 kb on + strand, within MPMX19_04519at 892.789 kb on + strand, within MPMX19_04519at 892.789 kb on + strand, within MPMX19_04519at 892.790 kb on - strand, within MPMX19_04519at 892.790 kb on - strand, within MPMX19_04519at 892.791 kb on + strand, within MPMX19_04519at 892.791 kb on + strand, within MPMX19_04519at 892.792 kb on - strand, within MPMX19_04519at 892.792 kb on - strand, within MPMX19_04519at 892.792 kb on - strand, within MPMX19_04519at 892.792 kb on - strand, within MPMX19_04519at 892.792 kb on - strand, within MPMX19_04519at 892.792 kb on - strand, within MPMX19_04519at 892.810 kb on + strand, within MPMX19_04519at 892.810 kb on + strand, within MPMX19_04519at 892.810 kb on + strand, within MPMX19_04519at 892.810 kb on + strand, within MPMX19_04519at 892.810 kb on + strand, within MPMX19_04519at 892.810 kb on + strand, within MPMX19_04519at 892.810 kb on + strand, within MPMX19_04519at 892.811 kb on - strand, within MPMX19_04519at 892.811 kb on - strand, within MPMX19_04519at 892.811 kb on - strand, within MPMX19_04519at 892.811 kb on - strand, within MPMX19_04519at 892.811 kb on - strand, within MPMX19_04519at 892.811 kb on - strand, within MPMX19_04519at 892.811 kb on - strand, within MPMX19_04519at 892.843 kb on + strand, within MPMX19_04519at 892.843 kb on + strand, within MPMX19_04519at 892.843 kb on + strand, within MPMX19_04519at 892.843 kb on + strand, within MPMX19_04519at 892.843 kb on + strand, within MPMX19_04519at 892.843 kb on + strand, within MPMX19_04519at 892.843 kb on + strand, within MPMX19_04519at 892.843 kb on + strand, within MPMX19_04519at 892.843 kb on + strand, within MPMX19_04519at 892.844 kb on - strand, within MPMX19_04519at 892.844 kb on - strand, within MPMX19_04519at 892.844 kb on - strand, within MPMX19_04519at 892.844 kb on - strand, within MPMX19_04519at 892.844 kb on - strand, within MPMX19_04519at 892.844 kb on - strand, within MPMX19_04519at 892.844 kb on - strand, within MPMX19_04519at 892.844 kb on - strand, within MPMX19_04519at 892.844 kb on - strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.912 kb on + strand, within MPMX19_04519at 892.913 kb on - strand, within MPMX19_04519at 892.913 kb on - strand, within MPMX19_04519at 892.913 kb on - strand, within MPMX19_04519at 892.913 kb on - strand, within MPMX19_04519at 892.990 kb on + strand, within MPMX19_04519at 892.990 kb on + strand, within MPMX19_04519at 892.990 kb on + strand, within MPMX19_04519at 892.990 kb on + strand, within MPMX19_04519at 892.990 kb on + strand, within MPMX19_04519at 892.991 kb on - strand, within MPMX19_04519at 892.991 kb on - strand, within MPMX19_04519at 892.991 kb on - strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.026 kb on + strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.027 kb on - strand, within MPMX19_04519at 893.049 kb on + strand, within MPMX19_04519at 893.050 kb on - strand, within MPMX19_04519at 893.050 kb on - strand, within MPMX19_04519at 893.050 kb on - strand, within MPMX19_04519at 893.050 kb on - strand, within MPMX19_04519at 893.050 kb on - strand, within MPMX19_04519at 893.059 kb on + strand, within MPMX19_04519at 893.059 kb on + strand, within MPMX19_04519at 893.290 kb on + strand, within MPMX19_04519at 893.290 kb on + strand, within MPMX19_04519at 893.291 kb on - strand, within MPMX19_04519at 893.291 kb on - strand, within MPMX19_04519at 893.434 kb on + strand, within MPMX19_04519at 893.434 kb on + strand, within MPMX19_04519at 893.435 kb on - strand, within MPMX19_04519at 893.435 kb on - strand, within MPMX19_04519at 893.740 kb on + strandat 893.740 kb on + strandat 893.740 kb on + strandat 893.740 kb on + strandat 893.740 kb on + strandat 893.741 kb on - strandat 893.741 kb on - strandat 893.741 kb on - strandat 893.741 kb on - strandat 893.741 kb on - strandat 893.741 kb on - strandat 893.741 kb on - strandat 893.876 kb on + strand, within MPMX19_04520at 893.877 kb on - strand, within MPMX19_04520at 893.877 kb on - strand, within MPMX19_04520at 893.877 kb on - strand, within MPMX19_04520at 893.885 kb on + strand, within MPMX19_04520at 893.885 kb on + strand, within MPMX19_04520at 893.886 kb on - strand, within MPMX19_04520at 893.966 kb on + strand, within MPMX19_04520at 893.967 kb on - strand, within MPMX19_04520at 893.967 kb on - strand, within MPMX19_04520at 893.967 kb on - strand, within MPMX19_04520at 893.967 kb on - strand, within MPMX19_04520at 894.005 kb on + strand, within MPMX19_04520at 894.006 kb on - strand, within MPMX19_04520at 894.006 kb on - strand, within MPMX19_04520at 894.006 kb on - strand, within MPMX19_04520at 894.006 kb on - strand, within MPMX19_04520at 894.006 kb on - strand, within MPMX19_04520at 894.306 kb on + strand, within MPMX19_04521at 894.306 kb on + strand, within MPMX19_04521at 894.306 kb on + strand, within MPMX19_04521at 894.306 kb on + strand, within MPMX19_04521at 894.306 kb on + strand, within MPMX19_04521at 894.306 kb on + strand, within MPMX19_04521at 894.306 kb on + strand, within MPMX19_04521at 894.306 kb on + strand, within MPMX19_04521at 894.306 kb on + strand, within MPMX19_04521at 894.306 kb on + strand, within MPMX19_04521at 894.307 kb on - strand, within MPMX19_04521at 894.345 kb on + strand, within MPMX19_04521at 894.345 kb on + strand, within MPMX19_04521at 894.346 kb on - strand, within MPMX19_04521at 894.481 kb on + strand, within MPMX19_04521at 894.481 kb on + strand, within MPMX19_04521at 894.482 kb on - strand, within MPMX19_04521at 894.482 kb on - strand, within MPMX19_04521at 894.482 kb on - strand, within MPMX19_04521

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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891,723 + MPMX19_04518 0.65 -1.1
891,759 + MPMX19_04518 0.68 +1.7
891,759 + MPMX19_04518 0.68 -1.1
891,759 + MPMX19_04518 0.68 -0.4
891,759 + MPMX19_04518 0.68 -1.6
891,759 + MPMX19_04518 0.68 -1.1
891,760 - MPMX19_04518 0.68 +1.1
891,760 - MPMX19_04518 0.68 +0.8
891,760 - MPMX19_04518 0.68 -0.9
891,760 - MPMX19_04518 0.68 -0.4
891,760 - MPMX19_04518 0.68 -0.6
891,760 - MPMX19_04518 0.68 -0.4
891,760 - MPMX19_04518 0.68 -0.3
891,795 + MPMX19_04518 0.71 -1.9
891,795 + MPMX19_04518 0.71 -0.9
891,911 - MPMX19_04518 0.81 -0.1
891,911 - MPMX19_04518 0.81 +0.2
891,945 + MPMX19_04518 0.84 -0.6
891,946 - MPMX19_04518 0.84 +0.2
892,056 + +1.4
892,057 - -0.6
892,274 + -1.0
892,386 - -0.1
892,428 + +0.3
892,428 + -0.9
892,429 - +0.2
892,612 + -0.9
892,612 + -0.9
892,613 - -0.1
892,789 + MPMX19_04519 0.18 +0.3
892,789 + MPMX19_04519 0.18 +0.1
892,789 + MPMX19_04519 0.18 +0.1
892,789 + MPMX19_04519 0.18 -1.0
892,789 + MPMX19_04519 0.18 -0.9
892,790 - MPMX19_04519 0.19 -0.4
892,790 - MPMX19_04519 0.19 +0.9
892,791 + MPMX19_04519 0.19 -0.9
892,791 + MPMX19_04519 0.19 -0.1
892,792 - MPMX19_04519 0.19 -1.4
892,792 - MPMX19_04519 0.19 -0.4
892,792 - MPMX19_04519 0.19 -1.5
892,792 - MPMX19_04519 0.19 -0.0
892,792 - MPMX19_04519 0.19 -1.7
892,792 - MPMX19_04519 0.19 -1.7
892,810 + MPMX19_04519 0.20 -2.0
892,810 + MPMX19_04519 0.20 -2.1
892,810 + MPMX19_04519 0.20 -2.0
892,810 + MPMX19_04519 0.20 -1.6
892,810 + MPMX19_04519 0.20 +0.4
892,810 + MPMX19_04519 0.20 -1.0
892,810 + MPMX19_04519 0.20 +0.1
892,811 - MPMX19_04519 0.20 -1.1
892,811 - MPMX19_04519 0.20 -1.1
892,811 - MPMX19_04519 0.20 -1.1
892,811 - MPMX19_04519 0.20 +0.9
892,811 - MPMX19_04519 0.20 -1.4
892,811 - MPMX19_04519 0.20 -0.4
892,811 - MPMX19_04519 0.20 +0.5
892,843 + MPMX19_04519 0.23 -1.1
892,843 + MPMX19_04519 0.23 -1.0
892,843 + MPMX19_04519 0.23 +0.4
892,843 + MPMX19_04519 0.23 +1.4
892,843 + MPMX19_04519 0.23 -0.9
892,843 + MPMX19_04519 0.23 +0.4
892,843 + MPMX19_04519 0.23 +0.4
892,843 + MPMX19_04519 0.23 -0.9
892,843 + MPMX19_04519 0.23 +1.1
892,844 - MPMX19_04519 0.23 -0.6
892,844 - MPMX19_04519 0.23 +2.0
892,844 - MPMX19_04519 0.23 +0.7
892,844 - MPMX19_04519 0.23 -0.9
892,844 - MPMX19_04519 0.23 +0.9
892,844 - MPMX19_04519 0.23 -1.1
892,844 - MPMX19_04519 0.23 -1.4
892,844 - MPMX19_04519 0.23 +0.7
892,844 - MPMX19_04519 0.23 -0.1
892,912 + MPMX19_04519 0.29 +0.0
892,912 + MPMX19_04519 0.29 -1.6
892,912 + MPMX19_04519 0.29 +0.1
892,912 + MPMX19_04519 0.29 -0.1
892,912 + MPMX19_04519 0.29 +0.4
892,912 + MPMX19_04519 0.29 -1.4
892,912 + MPMX19_04519 0.29 -0.2
892,912 + MPMX19_04519 0.29 -0.3
892,912 + MPMX19_04519 0.29 +0.2
892,912 + MPMX19_04519 0.29 -0.3
892,912 + MPMX19_04519 0.29 -1.1
892,913 - MPMX19_04519 0.29 +0.4
892,913 - MPMX19_04519 0.29 -1.8
892,913 - MPMX19_04519 0.29 -1.1
892,913 - MPMX19_04519 0.29 -0.4
892,990 + MPMX19_04519 0.36 -2.5
892,990 + MPMX19_04519 0.36 -0.9
892,990 + MPMX19_04519 0.36 +0.6
892,990 + MPMX19_04519 0.36 +0.4
892,990 + MPMX19_04519 0.36 -1.9
892,991 - MPMX19_04519 0.36 +1.4
892,991 - MPMX19_04519 0.36 -0.6
892,991 - MPMX19_04519 0.36 -1.4
893,026 + MPMX19_04519 0.39 -0.6
893,026 + MPMX19_04519 0.39 +0.2
893,026 + MPMX19_04519 0.39 +0.1
893,026 + MPMX19_04519 0.39 +0.4
893,026 + MPMX19_04519 0.39 -0.4
893,026 + MPMX19_04519 0.39 -1.1
893,026 + MPMX19_04519 0.39 -1.1
893,026 + MPMX19_04519 0.39 +0.1
893,026 + MPMX19_04519 0.39 -0.6
893,026 + MPMX19_04519 0.39 -2.1
893,026 + MPMX19_04519 0.39 -1.6
893,027 - MPMX19_04519 0.39 -0.4
893,027 - MPMX19_04519 0.39 -0.6
893,027 - MPMX19_04519 0.39 +0.6
893,027 - MPMX19_04519 0.39 +1.4
893,027 - MPMX19_04519 0.39 -1.4
893,027 - MPMX19_04519 0.39 +0.8
893,027 - MPMX19_04519 0.39 -0.6
893,027 - MPMX19_04519 0.39 -0.3
893,027 - MPMX19_04519 0.39 -1.4
893,027 - MPMX19_04519 0.39 -1.4
893,027 - MPMX19_04519 0.39 -1.4
893,049 + MPMX19_04519 0.41 -0.1
893,050 - MPMX19_04519 0.41 -0.3
893,050 - MPMX19_04519 0.41 -0.9
893,050 - MPMX19_04519 0.41 -1.6
893,050 - MPMX19_04519 0.41 -1.1
893,050 - MPMX19_04519 0.41 +0.1
893,059 + MPMX19_04519 0.42 +0.4
893,059 + MPMX19_04519 0.42 -0.4
893,290 + MPMX19_04519 0.61 -1.6
893,290 + MPMX19_04519 0.61 -0.6
893,291 - MPMX19_04519 0.61 -2.7
893,291 - MPMX19_04519 0.61 -0.2
893,434 + MPMX19_04519 0.74 -1.7
893,434 + MPMX19_04519 0.74 -0.7
893,435 - MPMX19_04519 0.74 -0.6
893,435 - MPMX19_04519 0.74 -0.6
893,740 + -0.4
893,740 + -0.4
893,740 + -1.9
893,740 + -0.4
893,740 + +0.4
893,741 - +0.4
893,741 - +0.4
893,741 - +3.0
893,741 - -0.6
893,741 - -0.3
893,741 - +1.4
893,741 - -0.1
893,876 + MPMX19_04520 0.28 -1.7
893,877 - MPMX19_04520 0.29 -0.1
893,877 - MPMX19_04520 0.29 -0.1
893,877 - MPMX19_04520 0.29 -1.1
893,885 + MPMX19_04520 0.31 -1.7
893,885 + MPMX19_04520 0.31 -0.6
893,886 - MPMX19_04520 0.31 +0.8
893,966 + MPMX19_04520 0.49 -1.9
893,967 - MPMX19_04520 0.50 -1.4
893,967 - MPMX19_04520 0.50 -1.1
893,967 - MPMX19_04520 0.50 -2.6
893,967 - MPMX19_04520 0.50 -0.7
894,005 + MPMX19_04520 0.58 +0.0
894,006 - MPMX19_04520 0.59 -0.6
894,006 - MPMX19_04520 0.59 +0.9
894,006 - MPMX19_04520 0.59 -0.7
894,006 - MPMX19_04520 0.59 -0.6
894,006 - MPMX19_04520 0.59 -2.3
894,306 + MPMX19_04521 0.27 -1.7
894,306 + MPMX19_04521 0.27 -0.9
894,306 + MPMX19_04521 0.27 -1.8
894,306 + MPMX19_04521 0.27 -0.1
894,306 + MPMX19_04521 0.27 -1.1
894,306 + MPMX19_04521 0.27 -0.7
894,306 + MPMX19_04521 0.27 +0.4
894,306 + MPMX19_04521 0.27 -0.1
894,306 + MPMX19_04521 0.27 -1.1
894,306 + MPMX19_04521 0.27 -0.1
894,307 - MPMX19_04521 0.27 -2.0
894,345 + MPMX19_04521 0.35 -0.3
894,345 + MPMX19_04521 0.35 +0.4
894,346 - MPMX19_04521 0.36 +1.4
894,481 + MPMX19_04521 0.65 +0.9
894,481 + MPMX19_04521 0.65 -1.7
894,482 - MPMX19_04521 0.65 -2.4
894,482 - MPMX19_04521 0.65 +1.1
894,482 - MPMX19_04521 0.65 +0.1

Or see this region's nucleotide sequence