Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04491 and MPMX19_04492 are separated by 233 nucleotides MPMX19_04492 and MPMX19_04493 are separated by 215 nucleotides MPMX19_04493 and MPMX19_04494 are separated by 245 nucleotides
MPMX19_04491: MPMX19_04491 - Sensor histidine kinase RcsC, at 857,559 to 860,075
_04491
MPMX19_04492: MPMX19_04492 - hypothetical protein, at 860,309 to 860,551
_04492
MPMX19_04493: MPMX19_04493 - PCP degradation transcriptional activation protein, at 860,767 to 861,780
_04493
MPMX19_04494: MPMX19_04494 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 862,026 to 862,979
_04494
Position (kb) 860
861
862 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 859.782 kb on + strand, within MPMX19_04491 at 859.782 kb on + strand, within MPMX19_04491 at 859.782 kb on + strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.783 kb on - strand, within MPMX19_04491 at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.903 kb on + strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.904 kb on - strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.915 kb on + strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 859.916 kb on - strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.196 kb on + strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.197 kb on - strand at 860.198 kb on + strand at 860.198 kb on + strand at 860.198 kb on + strand at 860.199 kb on - strand at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.349 kb on + strand, within MPMX19_04492 at 860.350 kb on - strand, within MPMX19_04492 at 860.350 kb on - strand, within MPMX19_04492 at 860.350 kb on - strand, within MPMX19_04492 at 860.528 kb on + strand at 860.528 kb on + strand at 860.529 kb on - strand at 860.529 kb on - strand at 860.529 kb on - strand at 860.558 kb on + strand at 860.558 kb on + strand at 860.558 kb on + strand at 860.558 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.610 kb on + strand at 860.611 kb on - strand at 860.611 kb on - strand at 860.676 kb on + strand at 860.676 kb on + strand at 860.676 kb on + strand at 860.677 kb on - strand at 861.097 kb on + strand, within MPMX19_04493 at 861.097 kb on + strand, within MPMX19_04493 at 861.097 kb on + strand, within MPMX19_04493 at 861.097 kb on + strand, within MPMX19_04493 at 861.097 kb on + strand, within MPMX19_04493 at 861.098 kb on - strand, within MPMX19_04493 at 861.098 kb on - strand, within MPMX19_04493 at 861.098 kb on - strand, within MPMX19_04493 at 861.434 kb on + strand, within MPMX19_04493 at 861.434 kb on + strand, within MPMX19_04493 at 861.434 kb on + strand, within MPMX19_04493 at 861.435 kb on - strand, within MPMX19_04493 at 861.526 kb on + strand, within MPMX19_04493 at 861.526 kb on + strand, within MPMX19_04493 at 861.526 kb on + strand, within MPMX19_04493 at 861.526 kb on + strand, within MPMX19_04493 at 861.526 kb on + strand, within MPMX19_04493 at 861.527 kb on - strand, within MPMX19_04493 at 861.527 kb on - strand, within MPMX19_04493 at 861.527 kb on - strand, within MPMX19_04493 at 861.527 kb on - strand, within MPMX19_04493 at 861.527 kb on - strand, within MPMX19_04493 at 861.637 kb on + strand, within MPMX19_04493 at 861.637 kb on + strand, within MPMX19_04493 at 861.637 kb on + strand, within MPMX19_04493 at 861.637 kb on + strand, within MPMX19_04493 at 861.637 kb on + strand, within MPMX19_04493 at 861.638 kb on - strand, within MPMX19_04493 at 861.638 kb on - strand, within MPMX19_04493 at 861.638 kb on - strand, within MPMX19_04493 at 861.638 kb on - strand, within MPMX19_04493 at 861.638 kb on - strand, within MPMX19_04493 at 861.779 kb on - strand at 861.812 kb on + strand at 861.812 kb on + strand at 861.813 kb on - strand at 861.813 kb on - strand at 861.817 kb on - strand at 861.817 kb on - strand at 861.817 kb on - strand at 861.817 kb on - strand at 861.857 kb on + strand at 861.857 kb on + strand at 861.857 kb on + strand at 861.858 kb on - strand at 861.858 kb on - strand at 861.858 kb on - strand at 861.858 kb on - strand at 861.912 kb on + strand at 861.913 kb on - strand at 861.913 kb on - strand at 861.913 kb on - strand at 861.926 kb on - strand at 861.926 kb on - strand at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.298 kb on + strand, within MPMX19_04494 at 862.299 kb on - strand, within MPMX19_04494 at 862.299 kb on - strand, within MPMX19_04494 at 862.368 kb on + strand, within MPMX19_04494 at 862.368 kb on + strand, within MPMX19_04494 at 862.368 kb on + strand, within MPMX19_04494 at 862.369 kb on - strand, within MPMX19_04494 at 862.369 kb on - strand, within MPMX19_04494 at 862.369 kb on - strand, within MPMX19_04494 at 862.369 kb on - strand, within MPMX19_04494 at 862.380 kb on + strand, within MPMX19_04494 at 862.380 kb on + strand, within MPMX19_04494 at 862.381 kb on - strand, within MPMX19_04494 at 862.381 kb on - strand, within MPMX19_04494 at 862.381 kb on - strand, within MPMX19_04494 at 862.381 kb on - strand, within MPMX19_04494 at 862.381 kb on - strand, within MPMX19_04494 at 862.381 kb on - strand, within MPMX19_04494
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 859,782 + MPMX19_04491 0.88 +0.1 859,782 + MPMX19_04491 0.88 -1.1 859,782 + MPMX19_04491 0.88 +0.0 859,783 - MPMX19_04491 0.88 -1.1 859,783 - MPMX19_04491 0.88 -1.3 859,783 - MPMX19_04491 0.88 -1.5 859,783 - MPMX19_04491 0.88 -0.7 859,903 + -0.6 859,903 + -1.9 859,903 + +0.3 859,903 + +0.9 859,903 + -0.6 859,903 + +0.9 859,903 + -1.1 859,904 - -1.4 859,904 - +0.7 859,904 - -0.9 859,904 - -0.1 859,904 - -0.7 859,904 - -1.3 859,904 - -0.7 859,915 + +0.4 859,915 + -0.9 859,915 + -2.1 859,915 + +1.4 859,915 + -0.6 859,916 - -1.4 859,916 - -0.6 859,916 - -1.1 859,916 - +0.4 859,916 - -1.5 859,916 - -1.1 860,196 + +0.1 860,196 + -0.4 860,196 + -0.1 860,196 + +0.6 860,196 + -0.7 860,197 - +0.6 860,197 - -0.4 860,197 - -0.1 860,197 - +0.4 860,197 - +0.4 860,197 - -0.9 860,198 + -1.1 860,198 + -2.1 860,198 + +1.0 860,199 - -0.1 860,349 + MPMX19_04492 0.16 -1.9 860,349 + MPMX19_04492 0.16 -0.4 860,349 + MPMX19_04492 0.16 -1.4 860,349 + MPMX19_04492 0.16 -1.7 860,349 + MPMX19_04492 0.16 -1.4 860,350 - MPMX19_04492 0.17 +0.1 860,350 - MPMX19_04492 0.17 -1.1 860,350 - MPMX19_04492 0.17 -0.8 860,528 + -0.1 860,528 + -0.1 860,529 - -0.3 860,529 - -0.1 860,529 - -1.1 860,558 + +0.4 860,558 + -0.1 860,558 + -0.1 860,558 + -0.3 860,610 + +1.4 860,610 + +0.3 860,610 + -0.9 860,610 + +1.7 860,610 + +0.1 860,610 + +0.9 860,610 + -1.1 860,611 - -0.9 860,611 - -1.6 860,676 + -1.4 860,676 + -1.7 860,676 + -1.3 860,677 - -1.0 861,097 + MPMX19_04493 0.33 -1.1 861,097 + MPMX19_04493 0.33 -1.4 861,097 + MPMX19_04493 0.33 +0.4 861,097 + MPMX19_04493 0.33 +2.2 861,097 + MPMX19_04493 0.33 -0.1 861,098 - MPMX19_04493 0.33 -2.1 861,098 - MPMX19_04493 0.33 +0.1 861,098 - MPMX19_04493 0.33 -0.4 861,434 + MPMX19_04493 0.66 -0.0 861,434 + MPMX19_04493 0.66 +0.4 861,434 + MPMX19_04493 0.66 -1.3 861,435 - MPMX19_04493 0.66 -0.1 861,526 + MPMX19_04493 0.75 -0.7 861,526 + MPMX19_04493 0.75 -1.5 861,526 + MPMX19_04493 0.75 -0.6 861,526 + MPMX19_04493 0.75 -0.9 861,526 + MPMX19_04493 0.75 -1.1 861,527 - MPMX19_04493 0.75 -2.7 861,527 - MPMX19_04493 0.75 +0.0 861,527 - MPMX19_04493 0.75 -2.9 861,527 - MPMX19_04493 0.75 -0.2 861,527 - MPMX19_04493 0.75 -1.4 861,637 + MPMX19_04493 0.86 +0.4 861,637 + MPMX19_04493 0.86 -1.4 861,637 + MPMX19_04493 0.86 -0.9 861,637 + MPMX19_04493 0.86 -1.9 861,637 + MPMX19_04493 0.86 -0.9 861,638 - MPMX19_04493 0.86 +0.8 861,638 - MPMX19_04493 0.86 +0.1 861,638 - MPMX19_04493 0.86 -2.0 861,638 - MPMX19_04493 0.86 +0.9 861,638 - MPMX19_04493 0.86 +0.4 861,779 - -0.4 861,812 + -1.4 861,812 + -1.7 861,813 - +0.2 861,813 - +1.4 861,817 - +0.9 861,817 - -0.4 861,817 - +0.2 861,817 - -1.1 861,857 + +0.7 861,857 + -1.1 861,857 + -0.8 861,858 - -0.5 861,858 - +0.4 861,858 - -0.1 861,858 - +0.6 861,912 + -0.7 861,913 - +0.5 861,913 - -0.4 861,913 - -0.8 861,926 - -0.8 861,926 - -2.0 862,298 + MPMX19_04494 0.29 +0.4 862,298 + MPMX19_04494 0.29 -0.1 862,298 + MPMX19_04494 0.29 +0.4 862,298 + MPMX19_04494 0.29 -0.1 862,298 + MPMX19_04494 0.29 -1.6 862,298 + MPMX19_04494 0.29 -1.6 862,298 + MPMX19_04494 0.29 -0.6 862,298 + MPMX19_04494 0.29 -1.9 862,298 + MPMX19_04494 0.29 -1.1 862,299 - MPMX19_04494 0.29 -0.1 862,299 - MPMX19_04494 0.29 -1.1 862,368 + MPMX19_04494 0.36 -0.9 862,368 + MPMX19_04494 0.36 +2.2 862,368 + MPMX19_04494 0.36 +0.3 862,369 - MPMX19_04494 0.36 -0.9 862,369 - MPMX19_04494 0.36 -1.9 862,369 - MPMX19_04494 0.36 -1.5 862,369 - MPMX19_04494 0.36 -0.4 862,380 + MPMX19_04494 0.37 -0.5 862,380 + MPMX19_04494 0.37 +0.8 862,381 - MPMX19_04494 0.37 -0.4 862,381 - MPMX19_04494 0.37 +1.0 862,381 - MPMX19_04494 0.37 +1.1 862,381 - MPMX19_04494 0.37 -1.4 862,381 - MPMX19_04494 0.37 +0.2 862,381 - MPMX19_04494 0.37 -1.1
Or see this region's nucleotide sequence