Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04490

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04489 and MPMX19_04490 are separated by 187 nucleotidesMPMX19_04490 and MPMX19_04491 are separated by 16 nucleotides MPMX19_04489: MPMX19_04489 - D-threonine aldolase, at 855,271 to 856,557 _04489 MPMX19_04490: MPMX19_04490 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 856,745 to 857,542 _04490 MPMX19_04491: MPMX19_04491 - Sensor histidine kinase RcsC, at 857,559 to 860,075 _04491 Position (kb) 856 857 858Strain fitness (log2 ratio) -2 -1 0 1 2at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.932 kb on + strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 855.933 kb on - strand, within MPMX19_04489at 856.361 kb on + strand, within MPMX19_04489at 856.362 kb on - strand, within MPMX19_04489at 856.362 kb on - strand, within MPMX19_04489at 856.362 kb on - strand, within MPMX19_04489at 856.362 kb on - strand, within MPMX19_04489at 856.621 kb on + strandat 856.710 kb on + strandat 856.710 kb on + strandat 856.710 kb on + strandat 856.710 kb on + strandat 856.711 kb on - strandat 856.711 kb on - strandat 856.711 kb on - strandat 856.711 kb on - strandat 856.711 kb on - strandat 856.796 kb on + strandat 856.796 kb on + strandat 856.796 kb on + strandat 856.796 kb on + strandat 856.796 kb on + strandat 856.797 kb on - strandat 856.797 kb on - strandat 856.797 kb on - strandat 856.797 kb on - strandat 856.797 kb on - strandat 856.797 kb on - strandat 856.797 kb on - strandat 856.797 kb on - strandat 856.923 kb on - strand, within MPMX19_04490at 857.249 kb on + strand, within MPMX19_04490at 857.249 kb on + strand, within MPMX19_04490at 857.249 kb on + strand, within MPMX19_04490at 857.249 kb on + strand, within MPMX19_04490at 857.249 kb on + strand, within MPMX19_04490at 857.249 kb on + strand, within MPMX19_04490at 857.249 kb on + strand, within MPMX19_04490at 857.249 kb on + strand, within MPMX19_04490at 857.249 kb on + strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.250 kb on - strand, within MPMX19_04490at 857.435 kb on + strand, within MPMX19_04490at 857.435 kb on + strand, within MPMX19_04490at 857.435 kb on + strand, within MPMX19_04490at 857.435 kb on + strand, within MPMX19_04490at 857.436 kb on - strand, within MPMX19_04490at 857.436 kb on - strand, within MPMX19_04490at 857.436 kb on - strand, within MPMX19_04490at 857.546 kb on + strandat 857.546 kb on + strandat 857.546 kb on + strandat 857.546 kb on + strandat 857.547 kb on - strandat 857.560 kb on + strandat 857.561 kb on - strandat 857.671 kb on + strandat 857.672 kb on - strandat 857.672 kb on - strandat 857.672 kb on - strandat 858.064 kb on + strand, within MPMX19_04491at 858.064 kb on + strand, within MPMX19_04491at 858.065 kb on - strand, within MPMX19_04491

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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855,932 + MPMX19_04489 0.51 +0.1
855,932 + MPMX19_04489 0.51 -0.9
855,932 + MPMX19_04489 0.51 -0.9
855,932 + MPMX19_04489 0.51 +0.9
855,932 + MPMX19_04489 0.51 -1.3
855,932 + MPMX19_04489 0.51 -0.6
855,932 + MPMX19_04489 0.51 -0.6
855,932 + MPMX19_04489 0.51 +0.8
855,932 + MPMX19_04489 0.51 +1.1
855,932 + MPMX19_04489 0.51 -1.8
855,932 + MPMX19_04489 0.51 -1.8
855,932 + MPMX19_04489 0.51 -0.1
855,932 + MPMX19_04489 0.51 +2.0
855,932 + MPMX19_04489 0.51 -0.6
855,932 + MPMX19_04489 0.51 -2.4
855,932 + MPMX19_04489 0.51 -0.1
855,933 - MPMX19_04489 0.51 -0.1
855,933 - MPMX19_04489 0.51 +0.4
855,933 - MPMX19_04489 0.51 +0.8
855,933 - MPMX19_04489 0.51 -0.6
855,933 - MPMX19_04489 0.51 +0.1
855,933 - MPMX19_04489 0.51 -1.8
855,933 - MPMX19_04489 0.51 +0.4
855,933 - MPMX19_04489 0.51 -1.1
855,933 - MPMX19_04489 0.51 -0.6
855,933 - MPMX19_04489 0.51 +0.7
856,361 + MPMX19_04489 0.85 -0.9
856,362 - MPMX19_04489 0.85 -0.4
856,362 - MPMX19_04489 0.85 -1.1
856,362 - MPMX19_04489 0.85 -0.4
856,362 - MPMX19_04489 0.85 -0.8
856,621 + -0.3
856,710 + -2.2
856,710 + -1.6
856,710 + +0.3
856,710 + +0.9
856,711 - -0.9
856,711 - +0.7
856,711 - -2.5
856,711 - -1.2
856,711 - -1.4
856,796 + +0.0
856,796 + -1.4
856,796 + -1.0
856,796 + -0.9
856,796 + -1.1
856,797 - -1.2
856,797 - -1.4
856,797 - +1.0
856,797 - -0.8
856,797 - +0.9
856,797 - +0.2
856,797 - +0.3
856,797 - +0.3
856,923 - MPMX19_04490 0.22 +0.4
857,249 + MPMX19_04490 0.63 +0.1
857,249 + MPMX19_04490 0.63 -2.4
857,249 + MPMX19_04490 0.63 -1.7
857,249 + MPMX19_04490 0.63 -1.6
857,249 + MPMX19_04490 0.63 +1.7
857,249 + MPMX19_04490 0.63 -1.1
857,249 + MPMX19_04490 0.63 +2.2
857,249 + MPMX19_04490 0.63 +0.4
857,249 + MPMX19_04490 0.63 -2.1
857,250 - MPMX19_04490 0.63 -1.4
857,250 - MPMX19_04490 0.63 -0.1
857,250 - MPMX19_04490 0.63 -1.6
857,250 - MPMX19_04490 0.63 -1.7
857,250 - MPMX19_04490 0.63 -0.1
857,250 - MPMX19_04490 0.63 -0.7
857,250 - MPMX19_04490 0.63 -0.6
857,250 - MPMX19_04490 0.63 -1.1
857,250 - MPMX19_04490 0.63 -1.0
857,250 - MPMX19_04490 0.63 -1.7
857,250 - MPMX19_04490 0.63 -1.4
857,435 + MPMX19_04490 0.86 -0.6
857,435 + MPMX19_04490 0.86 +0.4
857,435 + MPMX19_04490 0.86 -1.1
857,435 + MPMX19_04490 0.86 -0.7
857,436 - MPMX19_04490 0.87 +0.1
857,436 - MPMX19_04490 0.87 -2.6
857,436 - MPMX19_04490 0.87 -1.9
857,546 + -1.1
857,546 + -1.6
857,546 + -0.9
857,546 + +0.3
857,547 - +1.0
857,560 + +0.6
857,561 - -0.1
857,671 + -0.5
857,672 - +0.4
857,672 - -0.1
857,672 - -0.4
858,064 + MPMX19_04491 0.20 -0.3
858,064 + MPMX19_04491 0.20 -0.9
858,065 - MPMX19_04491 0.20 +0.0

Or see this region's nucleotide sequence