Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04391 and MPMX19_04392 are separated by 32 nucleotides MPMX19_04392 and MPMX19_04393 are separated by 75 nucleotides MPMX19_04393 and MPMX19_04394 are separated by 265 nucleotides MPMX19_04394 and MPMX19_04395 are separated by 4 nucleotides
MPMX19_04391: MPMX19_04391 - Homoserine O-acetyltransferase, at 756,740 to 757,957
_04391
MPMX19_04392: MPMX19_04392 - Bifunctional methionine biosynthesis protein MetXA/MetW, at 757,990 to 758,598
_04392
MPMX19_04393: MPMX19_04393 - hypothetical protein, at 758,674 to 758,943
_04393
MPMX19_04394: MPMX19_04394 - hypothetical protein, at 759,209 to 759,781
_04394
MPMX19_04395: MPMX19_04395 - Riboflavin transporter RibZ, at 759,786 to 761,216
_04395
Position (kb) 758
759 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 757.965 kb on + strand at 757.965 kb on + strand at 757.965 kb on + strand at 757.966 kb on - strand at 758.213 kb on - strand, within MPMX19_04392 at 758.233 kb on + strand, within MPMX19_04392 at 758.233 kb on + strand, within MPMX19_04392 at 758.233 kb on + strand, within MPMX19_04392 at 758.233 kb on + strand, within MPMX19_04392 at 758.234 kb on - strand, within MPMX19_04392 at 758.234 kb on - strand, within MPMX19_04392 at 758.234 kb on - strand, within MPMX19_04392 at 758.255 kb on + strand, within MPMX19_04392 at 758.255 kb on + strand, within MPMX19_04392 at 758.440 kb on - strand, within MPMX19_04392 at 758.647 kb on + strand at 758.647 kb on + strand at 758.647 kb on + strand at 758.648 kb on - strand at 758.648 kb on - strand at 758.666 kb on + strand at 758.666 kb on + strand at 758.666 kb on + strand at 758.667 kb on - strand at 758.667 kb on - strand at 758.667 kb on - strand at 758.667 kb on - strand at 758.772 kb on + strand, within MPMX19_04393 at 758.773 kb on - strand, within MPMX19_04393 at 758.830 kb on + strand, within MPMX19_04393 at 758.830 kb on + strand, within MPMX19_04393 at 758.830 kb on + strand, within MPMX19_04393 at 758.830 kb on + strand, within MPMX19_04393 at 758.831 kb on - strand, within MPMX19_04393 at 758.945 kb on + strand at 758.945 kb on + strand at 758.946 kb on - strand at 758.946 kb on - strand at 759.125 kb on + strand at 759.125 kb on + strand at 759.125 kb on + strand at 759.125 kb on + strand at 759.125 kb on + strand at 759.125 kb on + strand at 759.125 kb on + strand at 759.125 kb on + strand at 759.125 kb on + strand at 759.126 kb on - strand at 759.126 kb on - strand at 759.126 kb on - strand at 759.126 kb on - strand at 759.126 kb on - strand at 759.126 kb on - strand at 759.126 kb on - strand at 759.126 kb on - strand at 759.126 kb on - strand at 759.126 kb on - strand at 759.126 kb on - strand at 759.126 kb on - strand at 759.126 kb on - strand at 759.168 kb on + strand at 759.169 kb on - strand at 759.169 kb on - strand at 759.169 kb on - strand at 759.725 kb on + strand at 759.725 kb on + strand at 759.725 kb on + strand at 759.725 kb on + strand at 759.725 kb on + strand at 759.726 kb on - strand at 759.779 kb on + strand at 759.779 kb on + strand at 759.779 kb on + strand at 759.779 kb on + strand at 759.779 kb on + strand at 759.779 kb on + strand at 759.780 kb on - strand at 759.780 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 757,965 + +0.0 757,965 + -1.2 757,965 + -0.5 757,966 - +2.6 758,213 - MPMX19_04392 0.37 +1.2 758,233 + MPMX19_04392 0.40 -0.8 758,233 + MPMX19_04392 0.40 -0.3 758,233 + MPMX19_04392 0.40 +1.1 758,233 + MPMX19_04392 0.40 +0.5 758,234 - MPMX19_04392 0.40 +0.5 758,234 - MPMX19_04392 0.40 +0.5 758,234 - MPMX19_04392 0.40 +3.3 758,255 + MPMX19_04392 0.44 +0.5 758,255 + MPMX19_04392 0.44 +0.8 758,440 - MPMX19_04392 0.74 +3.5 758,647 + -1.7 758,647 + -1.1 758,647 + -0.2 758,648 - -1.3 758,648 - -2.6 758,666 + -0.7 758,666 + -1.1 758,666 + +0.5 758,667 - -1.3 758,667 - -1.5 758,667 - -0.5 758,667 - +0.3 758,772 + MPMX19_04393 0.36 -0.7 758,773 - MPMX19_04393 0.37 -1.7 758,830 + MPMX19_04393 0.58 +0.7 758,830 + MPMX19_04393 0.58 -0.8 758,830 + MPMX19_04393 0.58 +0.1 758,830 + MPMX19_04393 0.58 -0.5 758,831 - MPMX19_04393 0.58 +0.8 758,945 + +0.1 758,945 + +0.9 758,946 - +0.8 758,946 - -1.7 759,125 + -0.5 759,125 + -1.1 759,125 + -2.1 759,125 + -0.5 759,125 + +0.2 759,125 + -1.1 759,125 + -1.3 759,125 + -1.8 759,125 + -1.1 759,126 - -1.8 759,126 - -1.5 759,126 - -0.4 759,126 - -1.5 759,126 - -0.6 759,126 - +0.5 759,126 - +0.5 759,126 - +0.5 759,126 - -1.7 759,126 - +0.2 759,126 - +0.2 759,126 - -0.8 759,126 - -1.3 759,168 + -0.8 759,169 - -0.5 759,169 - +0.3 759,169 - -0.9 759,725 + -1.3 759,725 + +0.2 759,725 + -0.5 759,725 + -2.1 759,725 + +1.5 759,726 - -0.8 759,779 + -0.7 759,779 + -0.3 759,779 + -2.0 759,779 + +0.6 759,779 + -1.8 759,779 + -0.5 759,780 - -0.8 759,780 - +0.5
Or see this region's nucleotide sequence