Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04393

Experiment: NF_with10percent_fullN

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04391 and MPMX19_04392 are separated by 32 nucleotidesMPMX19_04392 and MPMX19_04393 are separated by 75 nucleotidesMPMX19_04393 and MPMX19_04394 are separated by 265 nucleotidesMPMX19_04394 and MPMX19_04395 are separated by 4 nucleotides MPMX19_04391: MPMX19_04391 - Homoserine O-acetyltransferase, at 756,740 to 757,957 _04391 MPMX19_04392: MPMX19_04392 - Bifunctional methionine biosynthesis protein MetXA/MetW, at 757,990 to 758,598 _04392 MPMX19_04393: MPMX19_04393 - hypothetical protein, at 758,674 to 758,943 _04393 MPMX19_04394: MPMX19_04394 - hypothetical protein, at 759,209 to 759,781 _04394 MPMX19_04395: MPMX19_04395 - Riboflavin transporter RibZ, at 759,786 to 761,216 _04395 Position (kb) 758 759Strain fitness (log2 ratio) -2 -1 0 1 2 3at 757.965 kb on + strandat 757.965 kb on + strandat 757.965 kb on + strandat 757.966 kb on - strandat 758.213 kb on - strand, within MPMX19_04392at 758.233 kb on + strand, within MPMX19_04392at 758.233 kb on + strand, within MPMX19_04392at 758.233 kb on + strand, within MPMX19_04392at 758.233 kb on + strand, within MPMX19_04392at 758.234 kb on - strand, within MPMX19_04392at 758.234 kb on - strand, within MPMX19_04392at 758.234 kb on - strand, within MPMX19_04392at 758.255 kb on + strand, within MPMX19_04392at 758.255 kb on + strand, within MPMX19_04392at 758.440 kb on - strand, within MPMX19_04392at 758.647 kb on + strandat 758.647 kb on + strandat 758.647 kb on + strandat 758.648 kb on - strandat 758.648 kb on - strandat 758.666 kb on + strandat 758.666 kb on + strandat 758.666 kb on + strandat 758.667 kb on - strandat 758.667 kb on - strandat 758.667 kb on - strandat 758.667 kb on - strandat 758.772 kb on + strand, within MPMX19_04393at 758.773 kb on - strand, within MPMX19_04393at 758.830 kb on + strand, within MPMX19_04393at 758.830 kb on + strand, within MPMX19_04393at 758.830 kb on + strand, within MPMX19_04393at 758.830 kb on + strand, within MPMX19_04393at 758.831 kb on - strand, within MPMX19_04393at 758.945 kb on + strandat 758.945 kb on + strandat 758.946 kb on - strandat 758.946 kb on - strandat 759.125 kb on + strandat 759.125 kb on + strandat 759.125 kb on + strandat 759.125 kb on + strandat 759.125 kb on + strandat 759.125 kb on + strandat 759.125 kb on + strandat 759.125 kb on + strandat 759.125 kb on + strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.126 kb on - strandat 759.168 kb on + strandat 759.169 kb on - strandat 759.169 kb on - strandat 759.169 kb on - strandat 759.725 kb on + strandat 759.725 kb on + strandat 759.725 kb on + strandat 759.725 kb on + strandat 759.725 kb on + strandat 759.726 kb on - strandat 759.779 kb on + strandat 759.779 kb on + strandat 759.779 kb on + strandat 759.779 kb on + strandat 759.779 kb on + strandat 759.779 kb on + strandat 759.780 kb on - strandat 759.780 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF_with10percent_fullN
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757,965 + +0.0
757,965 + -1.2
757,965 + -0.5
757,966 - +2.6
758,213 - MPMX19_04392 0.37 +1.2
758,233 + MPMX19_04392 0.40 -0.8
758,233 + MPMX19_04392 0.40 -0.3
758,233 + MPMX19_04392 0.40 +1.1
758,233 + MPMX19_04392 0.40 +0.5
758,234 - MPMX19_04392 0.40 +0.5
758,234 - MPMX19_04392 0.40 +0.5
758,234 - MPMX19_04392 0.40 +3.3
758,255 + MPMX19_04392 0.44 +0.5
758,255 + MPMX19_04392 0.44 +0.8
758,440 - MPMX19_04392 0.74 +3.5
758,647 + -1.7
758,647 + -1.1
758,647 + -0.2
758,648 - -1.3
758,648 - -2.6
758,666 + -0.7
758,666 + -1.1
758,666 + +0.5
758,667 - -1.3
758,667 - -1.5
758,667 - -0.5
758,667 - +0.3
758,772 + MPMX19_04393 0.36 -0.7
758,773 - MPMX19_04393 0.37 -1.7
758,830 + MPMX19_04393 0.58 +0.7
758,830 + MPMX19_04393 0.58 -0.8
758,830 + MPMX19_04393 0.58 +0.1
758,830 + MPMX19_04393 0.58 -0.5
758,831 - MPMX19_04393 0.58 +0.8
758,945 + +0.1
758,945 + +0.9
758,946 - +0.8
758,946 - -1.7
759,125 + -0.5
759,125 + -1.1
759,125 + -2.1
759,125 + -0.5
759,125 + +0.2
759,125 + -1.1
759,125 + -1.3
759,125 + -1.8
759,125 + -1.1
759,126 - -1.8
759,126 - -1.5
759,126 - -0.4
759,126 - -1.5
759,126 - -0.6
759,126 - +0.5
759,126 - +0.5
759,126 - +0.5
759,126 - -1.7
759,126 - +0.2
759,126 - +0.2
759,126 - -0.8
759,126 - -1.3
759,168 + -0.8
759,169 - -0.5
759,169 - +0.3
759,169 - -0.9
759,725 + -1.3
759,725 + +0.2
759,725 + -0.5
759,725 + -2.1
759,725 + +1.5
759,726 - -0.8
759,779 + -0.7
759,779 + -0.3
759,779 + -2.0
759,779 + +0.6
759,779 + -1.8
759,779 + -0.5
759,780 - -0.8
759,780 - +0.5

Or see this region's nucleotide sequence