Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04319 and MPMX19_04320 are separated by 170 nucleotides MPMX19_04320 and MPMX19_04321 are separated by 15 nucleotides MPMX19_04321 and MPMX19_04322 are separated by 73 nucleotides MPMX19_04322 and MPMX19_04323 are separated by 161 nucleotides
MPMX19_04319: MPMX19_04319 - Alanine--tRNA ligase, at 682,977 to 685,646
_04319
MPMX19_04320: MPMX19_04320 - Sec-independent protein translocase protein TatC, at 685,817 to 686,605
_04320
MPMX19_04321: MPMX19_04321 - Sec-independent protein translocase protein TatB, at 686,621 to 687,157
_04321
MPMX19_04322: MPMX19_04322 - Sec-independent protein translocase protein TatA, at 687,231 to 687,470
_04322
MPMX19_04323: MPMX19_04323 - Segregation and condensation protein B, at 687,632 to 688,249
_04323
Position (kb) 686
687
688 Strain fitness (log2 ratio) -2
-1
0
1
2 at 685.703 kb on - strand at 685.739 kb on + strand at 685.739 kb on + strand at 685.739 kb on + strand at 685.740 kb on - strand at 685.740 kb on - strand at 685.740 kb on - strand at 685.740 kb on - strand at 685.740 kb on - strand at 685.740 kb on - strand at 685.743 kb on - strand at 685.743 kb on - strand at 685.743 kb on - strand at 685.743 kb on - strand at 685.747 kb on + strand at 685.747 kb on + strand at 685.747 kb on + strand at 685.747 kb on + strand at 685.747 kb on + strand at 685.748 kb on - strand at 685.748 kb on - strand at 685.748 kb on - strand at 685.748 kb on - strand at 687.480 kb on - strand at 687.480 kb on - strand at 687.480 kb on - strand at 687.516 kb on - strand at 687.516 kb on - strand at 687.516 kb on - strand at 687.516 kb on - strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.633 kb on + strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.634 kb on - strand at 687.936 kb on + strand, within MPMX19_04323 at 687.936 kb on + strand, within MPMX19_04323 at 687.936 kb on + strand, within MPMX19_04323 at 687.936 kb on + strand, within MPMX19_04323 at 687.936 kb on + strand, within MPMX19_04323 at 687.937 kb on - strand, within MPMX19_04323 at 687.937 kb on - strand, within MPMX19_04323 at 687.937 kb on - strand, within MPMX19_04323 at 688.083 kb on + strand, within MPMX19_04323 at 688.083 kb on + strand, within MPMX19_04323 at 688.083 kb on + strand, within MPMX19_04323 at 688.083 kb on + strand, within MPMX19_04323 at 688.083 kb on + strand, within MPMX19_04323 at 688.083 kb on + strand, within MPMX19_04323
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 685,703 - -1.3 685,739 + -0.8 685,739 + +1.1 685,739 + +1.1 685,740 - +0.5 685,740 - -2.5 685,740 - -1.7 685,740 - -1.5 685,740 - +1.8 685,740 - +0.1 685,743 - -1.9 685,743 - -1.1 685,743 - +1.2 685,743 - -1.9 685,747 + -1.5 685,747 + -0.8 685,747 + -0.1 685,747 + -0.3 685,747 + -0.5 685,748 - -0.1 685,748 - -0.8 685,748 - -0.2 685,748 - -0.8 687,480 - +0.3 687,480 - -1.1 687,480 - -0.8 687,516 - -0.5 687,516 - -0.5 687,516 - -0.1 687,516 - -1.1 687,633 + +0.3 687,633 + +0.1 687,633 + +0.1 687,633 + +0.3 687,633 + -1.3 687,633 + -0.4 687,633 + -0.4 687,633 + +0.3 687,633 + -1.1 687,633 + -1.9 687,633 + -0.1 687,633 + -1.3 687,633 + +0.5 687,633 + +0.5 687,633 + +0.8 687,633 + -0.5 687,633 + -2.6 687,633 + -1.1 687,633 + +0.1 687,634 - -0.7 687,634 - -0.7 687,634 - -0.5 687,634 - -0.3 687,634 - -0.7 687,634 - -0.2 687,634 - -0.1 687,634 - +0.2 687,634 - -0.8 687,634 - +1.3 687,634 - -0.5 687,634 - +0.5 687,634 - -1.9 687,634 - -1.1 687,634 - -1.1 687,634 - +1.5 687,936 + MPMX19_04323 0.49 +0.2 687,936 + MPMX19_04323 0.49 -1.7 687,936 + MPMX19_04323 0.49 -0.5 687,936 + MPMX19_04323 0.49 -0.1 687,936 + MPMX19_04323 0.49 +0.9 687,937 - MPMX19_04323 0.49 -1.1 687,937 - MPMX19_04323 0.49 -0.7 687,937 - MPMX19_04323 0.49 -0.3 688,083 + MPMX19_04323 0.73 -0.5 688,083 + MPMX19_04323 0.73 +0.5 688,083 + MPMX19_04323 0.73 -0.1 688,083 + MPMX19_04323 0.73 -1.1 688,083 + MPMX19_04323 0.73 -0.7 688,083 + MPMX19_04323 0.73 -2.1
Or see this region's nucleotide sequence