Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04272 and MPMX19_04273 are separated by 412 nucleotides MPMX19_04273 and MPMX19_04274 are separated by 466 nucleotides
MPMX19_04272: MPMX19_04272 - Phytochrome-like protein cph1, at 630,891 to 633,107
_04272
MPMX19_04273: MPMX19_04273 - NADH:quinone reductase, at 633,520 to 634,494
_04273
MPMX19_04274: MPMX19_04274 - RNA polymerase sigma-H factor, at 634,961 to 635,497
_04274
MPMX19_04275: MPMX19_04275 - hypothetical protein, at 635,494 to 635,922
_04275
Position (kb) 633
634
635 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 632.548 kb on + strand, within MPMX19_04272 at 632.548 kb on + strand, within MPMX19_04272 at 632.548 kb on + strand, within MPMX19_04272 at 632.614 kb on + strand, within MPMX19_04272 at 632.614 kb on + strand, within MPMX19_04272 at 632.615 kb on - strand, within MPMX19_04272 at 632.731 kb on + strand, within MPMX19_04272 at 632.731 kb on + strand, within MPMX19_04272 at 632.732 kb on - strand, within MPMX19_04272 at 633.339 kb on + strand at 633.339 kb on + strand at 633.340 kb on - strand at 633.340 kb on - strand at 633.340 kb on - strand at 633.340 kb on - strand at 633.340 kb on - strand at 633.340 kb on - strand at 633.340 kb on - strand at 633.340 kb on - strand at 633.341 kb on + strand at 633.341 kb on + strand at 633.341 kb on + strand at 633.341 kb on + strand at 633.342 kb on - strand at 633.342 kb on - strand at 633.342 kb on - strand at 633.342 kb on - strand at 633.342 kb on - strand at 633.342 kb on - strand at 633.342 kb on - strand at 633.350 kb on - strand at 633.350 kb on - strand at 633.350 kb on - strand at 633.350 kb on - strand at 633.350 kb on - strand at 633.350 kb on - strand at 633.354 kb on + strand at 633.354 kb on + strand at 633.354 kb on + strand at 633.354 kb on + strand at 633.354 kb on + strand at 633.355 kb on - strand at 633.355 kb on - strand at 633.355 kb on - strand at 633.355 kb on - strand at 633.359 kb on + strand at 633.359 kb on + strand at 633.359 kb on + strand at 633.359 kb on + strand at 633.360 kb on - strand at 633.360 kb on - strand at 633.366 kb on + strand at 633.366 kb on + strand at 633.367 kb on - strand at 633.422 kb on + strand at 633.449 kb on + strand at 633.449 kb on + strand at 633.449 kb on + strand at 633.449 kb on + strand at 633.449 kb on + strand at 633.449 kb on + strand at 633.450 kb on - strand at 633.450 kb on - strand at 633.450 kb on - strand at 633.450 kb on - strand at 633.451 kb on + strand at 633.451 kb on + strand at 633.451 kb on + strand at 633.451 kb on + strand at 633.452 kb on - strand at 633.452 kb on - strand at 633.452 kb on - strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.459 kb on + strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.460 kb on - strand at 633.533 kb on + strand at 633.534 kb on - strand at 633.763 kb on + strand, within MPMX19_04273 at 633.763 kb on + strand, within MPMX19_04273 at 633.763 kb on + strand, within MPMX19_04273 at 633.763 kb on + strand, within MPMX19_04273 at 633.772 kb on + strand, within MPMX19_04273 at 633.772 kb on + strand, within MPMX19_04273 at 633.772 kb on + strand, within MPMX19_04273 at 633.773 kb on - strand, within MPMX19_04273 at 633.773 kb on - strand, within MPMX19_04273 at 633.773 kb on - strand, within MPMX19_04273 at 633.773 kb on - strand, within MPMX19_04273 at 634.492 kb on + strand at 634.492 kb on + strand at 634.492 kb on + strand at 634.492 kb on + strand at 634.492 kb on + strand at 634.492 kb on + strand at 634.492 kb on + strand at 634.492 kb on + strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.493 kb on - strand at 634.688 kb on + strand at 634.785 kb on + strand at 634.794 kb on + strand at 634.795 kb on - strand at 634.832 kb on + strand at 634.833 kb on - strand at 634.881 kb on + strand at 634.881 kb on + strand at 634.881 kb on + strand at 634.881 kb on + strand at 634.882 kb on - strand at 634.882 kb on - strand at 634.883 kb on + strand at 634.883 kb on + strand at 634.883 kb on + strand at 634.883 kb on + strand at 634.883 kb on + strand at 634.883 kb on + strand at 634.884 kb on - strand at 634.884 kb on - strand at 634.884 kb on - strand at 634.884 kb on - strand at 634.884 kb on - strand at 634.884 kb on - strand at 634.884 kb on - strand at 634.884 kb on - strand at 634.930 kb on + strand at 634.931 kb on - strand at 635.159 kb on + strand, within MPMX19_04274 at 635.159 kb on + strand, within MPMX19_04274 at 635.159 kb on + strand, within MPMX19_04274 at 635.159 kb on + strand, within MPMX19_04274 at 635.160 kb on - strand, within MPMX19_04274 at 635.160 kb on - strand, within MPMX19_04274 at 635.160 kb on - strand, within MPMX19_04274 at 635.189 kb on + strand, within MPMX19_04274 at 635.189 kb on + strand, within MPMX19_04274 at 635.189 kb on + strand, within MPMX19_04274 at 635.189 kb on + strand, within MPMX19_04274 at 635.189 kb on + strand, within MPMX19_04274 at 635.189 kb on + strand, within MPMX19_04274 at 635.189 kb on + strand, within MPMX19_04274 at 635.189 kb on + strand, within MPMX19_04274 at 635.189 kb on + strand, within MPMX19_04274 at 635.190 kb on - strand, within MPMX19_04274 at 635.190 kb on - strand, within MPMX19_04274 at 635.190 kb on - strand, within MPMX19_04274 at 635.190 kb on - strand, within MPMX19_04274 at 635.190 kb on - strand, within MPMX19_04274 at 635.190 kb on - strand, within MPMX19_04274 at 635.351 kb on + strand, within MPMX19_04274 at 635.351 kb on + strand, within MPMX19_04274 at 635.351 kb on + strand, within MPMX19_04274 at 635.351 kb on + strand, within MPMX19_04274 at 635.351 kb on + strand, within MPMX19_04274 at 635.351 kb on + strand, within MPMX19_04274 at 635.352 kb on - strand, within MPMX19_04274 at 635.352 kb on - strand, within MPMX19_04274 at 635.352 kb on - strand, within MPMX19_04274 at 635.352 kb on - strand, within MPMX19_04274 at 635.352 kb on - strand, within MPMX19_04274 at 635.352 kb on - strand, within MPMX19_04274 at 635.352 kb on - strand, within MPMX19_04274 at 635.352 kb on - strand, within MPMX19_04274 at 635.388 kb on + strand, within MPMX19_04274
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 632,548 + MPMX19_04272 0.75 -1.3 632,548 + MPMX19_04272 0.75 -1.1 632,548 + MPMX19_04272 0.75 +0.5 632,614 + MPMX19_04272 0.78 -0.8 632,614 + MPMX19_04272 0.78 -1.1 632,615 - MPMX19_04272 0.78 +0.5 632,731 + MPMX19_04272 0.83 -1.1 632,731 + MPMX19_04272 0.83 +2.5 632,732 - MPMX19_04272 0.83 +0.9 633,339 + +0.1 633,339 + +0.7 633,340 - +0.3 633,340 - -0.1 633,340 - -0.7 633,340 - -1.1 633,340 - -0.7 633,340 - -1.3 633,340 - -0.1 633,340 - -1.4 633,341 + -1.1 633,341 + -1.3 633,341 + -2.2 633,341 + -0.8 633,342 - -1.3 633,342 - -0.1 633,342 - -1.7 633,342 - +0.9 633,342 - -0.4 633,342 - -1.1 633,342 - -1.3 633,350 - -1.1 633,350 - -0.1 633,350 - -2.7 633,350 - -1.1 633,350 - -0.1 633,350 - -0.7 633,354 + -1.5 633,354 + -1.9 633,354 + -1.7 633,354 + -0.8 633,354 + -0.3 633,355 - -0.1 633,355 - -1.0 633,355 - +0.2 633,355 - -0.5 633,359 + +0.7 633,359 + -0.5 633,359 + -0.1 633,359 + -1.9 633,360 - -0.1 633,360 - -0.8 633,366 + +0.5 633,366 + -1.1 633,367 - -0.9 633,422 + +0.8 633,449 + +0.1 633,449 + -1.6 633,449 + -0.4 633,449 + -0.1 633,449 + +0.5 633,449 + -2.4 633,450 - -0.7 633,450 - +0.5 633,450 - +0.1 633,450 - +1.5 633,451 + -1.8 633,451 + -0.1 633,451 + +0.2 633,451 + +0.3 633,452 - +0.9 633,452 - -1.1 633,452 - -1.2 633,459 + -0.1 633,459 + -0.6 633,459 + -1.8 633,459 + -1.5 633,459 + +0.3 633,459 + -0.7 633,459 + -1.3 633,459 + -1.5 633,459 + -0.6 633,459 + +1.5 633,459 + +0.5 633,459 + -0.3 633,460 - -0.8 633,460 - -0.2 633,460 - -0.0 633,460 - -1.4 633,460 - -0.3 633,460 - -0.1 633,460 - +0.5 633,460 - +0.3 633,460 - -0.1 633,460 - -1.1 633,460 - -0.3 633,533 + +1.1 633,534 - +2.3 633,763 + MPMX19_04273 0.25 +1.5 633,763 + MPMX19_04273 0.25 -1.7 633,763 + MPMX19_04273 0.25 -1.0 633,763 + MPMX19_04273 0.25 -2.2 633,772 + MPMX19_04273 0.26 -1.1 633,772 + MPMX19_04273 0.26 -1.3 633,772 + MPMX19_04273 0.26 +0.3 633,773 - MPMX19_04273 0.26 -1.9 633,773 - MPMX19_04273 0.26 -1.2 633,773 - MPMX19_04273 0.26 -1.7 633,773 - MPMX19_04273 0.26 -0.8 634,492 + -0.8 634,492 + +0.3 634,492 + -2.3 634,492 + -2.0 634,492 + -0.8 634,492 + -0.5 634,492 + +0.9 634,492 + -0.3 634,493 - -1.2 634,493 - +0.2 634,493 - -0.5 634,493 - +0.5 634,493 - -1.1 634,493 - -0.9 634,493 - -1.1 634,493 - -0.8 634,493 - -0.5 634,493 - -0.7 634,493 - +0.5 634,493 - -0.7 634,688 + -0.8 634,785 + -0.5 634,794 + +1.1 634,795 - +1.5 634,832 + +2.8 634,833 - -1.8 634,881 + -1.7 634,881 + -0.8 634,881 + -0.9 634,881 + -2.1 634,882 - -0.8 634,882 - +0.9 634,883 + -0.2 634,883 + -1.1 634,883 + -0.8 634,883 + -2.6 634,883 + -0.5 634,883 + -1.1 634,884 - +1.5 634,884 - -1.1 634,884 - -0.1 634,884 - -0.8 634,884 - +0.4 634,884 - +0.2 634,884 - +2.1 634,884 - -0.4 634,930 + -1.1 634,931 - -0.4 635,159 + MPMX19_04274 0.37 -1.4 635,159 + MPMX19_04274 0.37 +0.9 635,159 + MPMX19_04274 0.37 +0.8 635,159 + MPMX19_04274 0.37 -0.5 635,160 - MPMX19_04274 0.37 -1.2 635,160 - MPMX19_04274 0.37 -0.1 635,160 - MPMX19_04274 0.37 -1.7 635,189 + MPMX19_04274 0.42 -0.1 635,189 + MPMX19_04274 0.42 +0.5 635,189 + MPMX19_04274 0.42 -1.3 635,189 + MPMX19_04274 0.42 -1.5 635,189 + MPMX19_04274 0.42 -0.5 635,189 + MPMX19_04274 0.42 -1.2 635,189 + MPMX19_04274 0.42 -0.1 635,189 + MPMX19_04274 0.42 +0.1 635,189 + MPMX19_04274 0.42 -1.3 635,190 - MPMX19_04274 0.43 +0.8 635,190 - MPMX19_04274 0.43 +0.4 635,190 - MPMX19_04274 0.43 +0.7 635,190 - MPMX19_04274 0.43 -0.8 635,190 - MPMX19_04274 0.43 -0.2 635,190 - MPMX19_04274 0.43 -0.4 635,351 + MPMX19_04274 0.73 -0.2 635,351 + MPMX19_04274 0.73 -0.8 635,351 + MPMX19_04274 0.73 -0.3 635,351 + MPMX19_04274 0.73 -1.1 635,351 + MPMX19_04274 0.73 -2.1 635,351 + MPMX19_04274 0.73 -0.5 635,352 - MPMX19_04274 0.73 -0.9 635,352 - MPMX19_04274 0.73 +0.2 635,352 - MPMX19_04274 0.73 -0.8 635,352 - MPMX19_04274 0.73 -0.5 635,352 - MPMX19_04274 0.73 -1.7 635,352 - MPMX19_04274 0.73 -0.1 635,352 - MPMX19_04274 0.73 -2.2 635,352 - MPMX19_04274 0.73 -0.1 635,388 + MPMX19_04274 0.80 +1.5
Or see this region's nucleotide sequence