Experiment: NF_with10percent_fullN
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04243 and MPMX19_04244 are separated by 28 nucleotides MPMX19_04244 and MPMX19_04245 are separated by 228 nucleotides MPMX19_04245 and MPMX19_04246 are separated by 190 nucleotides MPMX19_04246 and MPMX19_04247 are separated by 69 nucleotides
MPMX19_04243: MPMX19_04243 - 2,3-dehydroadipyl-CoA hydratase, at 590,438 to 591,217
_04243
MPMX19_04244: MPMX19_04244 - hypothetical protein, at 591,246 to 591,464
_04244
MPMX19_04245: MPMX19_04245 - hypothetical protein, at 591,693 to 592,139
_04245
MPMX19_04246: MPMX19_04246 - hypothetical protein, at 592,330 to 592,758
_04246
MPMX19_04247: MPMX19_04247 - hypothetical protein, at 592,828 to 595,608
_04247
Position (kb) 591
592
593 Strain fitness (log2 ratio) -2
-1
0
1 at 590.840 kb on + strand, within MPMX19_04243 at 590.840 kb on + strand, within MPMX19_04243 at 590.840 kb on + strand, within MPMX19_04243 at 590.840 kb on + strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 590.841 kb on - strand, within MPMX19_04243 at 591.070 kb on + strand, within MPMX19_04243 at 591.071 kb on - strand, within MPMX19_04243 at 591.206 kb on + strand at 591.206 kb on + strand at 591.206 kb on + strand at 591.206 kb on + strand at 591.207 kb on - strand at 591.207 kb on - strand at 591.207 kb on - strand at 591.207 kb on - strand at 591.207 kb on - strand at 591.241 kb on + strand at 591.241 kb on + strand at 591.241 kb on + strand at 591.242 kb on - strand at 591.242 kb on - strand at 591.267 kb on - strand at 591.267 kb on - strand at 591.361 kb on + strand, within MPMX19_04244 at 591.361 kb on + strand, within MPMX19_04244 at 591.361 kb on + strand, within MPMX19_04244 at 591.362 kb on - strand, within MPMX19_04244 at 591.362 kb on - strand, within MPMX19_04244 at 591.362 kb on - strand, within MPMX19_04244 at 591.362 kb on - strand, within MPMX19_04244 at 591.397 kb on + strand, within MPMX19_04244 at 591.398 kb on - strand, within MPMX19_04244 at 591.398 kb on - strand, within MPMX19_04244 at 591.440 kb on + strand, within MPMX19_04244 at 591.440 kb on + strand, within MPMX19_04244 at 591.440 kb on + strand, within MPMX19_04244 at 591.441 kb on - strand, within MPMX19_04244 at 591.441 kb on - strand, within MPMX19_04244 at 591.441 kb on - strand, within MPMX19_04244 at 591.441 kb on - strand, within MPMX19_04244 at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.471 kb on + strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.472 kb on - strand at 591.491 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.511 kb on + strand at 591.512 kb on - strand at 591.512 kb on - strand at 591.512 kb on - strand at 591.512 kb on - strand at 591.512 kb on - strand at 591.512 kb on - strand at 591.656 kb on + strand at 591.656 kb on + strand at 591.656 kb on + strand at 591.656 kb on + strand at 591.656 kb on + strand at 591.656 kb on + strand at 591.657 kb on - strand at 591.657 kb on - strand at 591.657 kb on - strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.658 kb on + strand at 591.659 kb on - strand at 591.659 kb on - strand at 591.659 kb on - strand at 591.659 kb on - strand at 591.659 kb on - strand at 591.659 kb on - strand at 591.659 kb on - strand at 591.765 kb on + strand, within MPMX19_04245 at 591.765 kb on + strand, within MPMX19_04245 at 591.765 kb on + strand, within MPMX19_04245 at 591.765 kb on + strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.766 kb on - strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.767 kb on + strand, within MPMX19_04245 at 591.768 kb on - strand, within MPMX19_04245 at 591.768 kb on - strand, within MPMX19_04245 at 591.768 kb on - strand, within MPMX19_04245 at 591.804 kb on - strand, within MPMX19_04245 at 591.804 kb on - strand, within MPMX19_04245 at 591.911 kb on + strand, within MPMX19_04245 at 592.159 kb on + strand at 592.159 kb on + strand at 592.159 kb on + strand at 592.159 kb on + strand at 592.159 kb on + strand at 592.159 kb on + strand at 592.159 kb on + strand at 592.160 kb on - strand at 592.160 kb on - strand at 592.160 kb on - strand at 592.160 kb on - strand at 592.160 kb on - strand at 592.160 kb on - strand at 592.563 kb on + strand, within MPMX19_04246 at 592.563 kb on + strand, within MPMX19_04246 at 592.563 kb on + strand, within MPMX19_04246 at 592.563 kb on + strand, within MPMX19_04246 at 592.563 kb on + strand, within MPMX19_04246 at 592.564 kb on - strand, within MPMX19_04246 at 592.564 kb on - strand, within MPMX19_04246 at 592.564 kb on - strand, within MPMX19_04246 at 592.564 kb on - strand, within MPMX19_04246 at 593.008 kb on + strand at 593.009 kb on - strand at 593.048 kb on + strand at 593.049 kb on - strand at 593.049 kb on - strand at 593.049 kb on - strand at 593.049 kb on - strand at 593.049 kb on - strand at 593.096 kb on + strand at 593.096 kb on + strand at 593.096 kb on + strand at 593.096 kb on + strand at 593.097 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF_with10percent_fullN remove 590,840 + MPMX19_04243 0.52 -0.3 590,840 + MPMX19_04243 0.52 +0.4 590,840 + MPMX19_04243 0.52 -1.3 590,840 + MPMX19_04243 0.52 -0.3 590,841 - MPMX19_04243 0.52 +0.5 590,841 - MPMX19_04243 0.52 -1.3 590,841 - MPMX19_04243 0.52 -1.1 590,841 - MPMX19_04243 0.52 +0.8 590,841 - MPMX19_04243 0.52 -1.6 590,841 - MPMX19_04243 0.52 -1.9 590,841 - MPMX19_04243 0.52 -0.1 590,841 - MPMX19_04243 0.52 +1.3 590,841 - MPMX19_04243 0.52 -0.6 590,841 - MPMX19_04243 0.52 -0.4 590,841 - MPMX19_04243 0.52 -0.5 590,841 - MPMX19_04243 0.52 +0.8 591,070 + MPMX19_04243 0.81 -1.1 591,071 - MPMX19_04243 0.81 +1.5 591,206 + -0.2 591,206 + -0.5 591,206 + -1.3 591,206 + -1.3 591,207 - -0.5 591,207 - -0.8 591,207 - -0.1 591,207 - +1.3 591,207 - -0.2 591,241 + -0.2 591,241 + +0.5 591,241 + -2.6 591,242 - +0.2 591,242 - +0.2 591,267 - +0.1 591,267 - -0.2 591,361 + MPMX19_04244 0.53 +1.5 591,361 + MPMX19_04244 0.53 -0.5 591,361 + MPMX19_04244 0.53 -0.7 591,362 - MPMX19_04244 0.53 -0.1 591,362 - MPMX19_04244 0.53 -0.5 591,362 - MPMX19_04244 0.53 -0.8 591,362 - MPMX19_04244 0.53 -0.5 591,397 + MPMX19_04244 0.69 -0.8 591,398 - MPMX19_04244 0.69 +1.5 591,398 - MPMX19_04244 0.69 -1.1 591,440 + MPMX19_04244 0.89 -1.5 591,440 + MPMX19_04244 0.89 -0.6 591,440 + MPMX19_04244 0.89 -0.5 591,441 - MPMX19_04244 0.89 -1.3 591,441 - MPMX19_04244 0.89 +0.4 591,441 - MPMX19_04244 0.89 +0.9 591,441 - MPMX19_04244 0.89 -0.0 591,471 + -1.8 591,471 + +0.8 591,471 + -0.4 591,471 + +0.9 591,471 + +0.9 591,471 + -0.5 591,471 + +0.5 591,471 + -0.8 591,471 + -0.8 591,472 - -0.5 591,472 - -1.5 591,472 - +0.2 591,472 - -0.2 591,472 - +1.5 591,472 - -1.3 591,472 - -1.3 591,472 - -0.5 591,491 + +0.6 591,511 + -0.2 591,511 + -0.8 591,511 + -1.9 591,511 + -0.9 591,511 + +0.5 591,511 + +0.8 591,511 + -1.5 591,511 + -2.5 591,512 - -0.6 591,512 - -0.5 591,512 - -0.8 591,512 - +1.1 591,512 - -1.5 591,512 - +0.0 591,656 + -0.1 591,656 + +0.2 591,656 + -0.1 591,656 + -0.1 591,656 + -1.3 591,656 + -0.3 591,657 - +0.5 591,657 - -0.1 591,657 - -1.6 591,658 + -0.5 591,658 + +0.1 591,658 + -0.1 591,658 + -0.5 591,658 + +0.1 591,658 + -1.3 591,658 + -0.2 591,658 + -0.5 591,658 + -1.3 591,658 + +0.2 591,658 + -0.5 591,658 + +1.1 591,659 - -0.1 591,659 - -1.1 591,659 - -0.8 591,659 - -1.3 591,659 - -0.1 591,659 - -2.7 591,659 - -1.6 591,765 + MPMX19_04245 0.16 -2.2 591,765 + MPMX19_04245 0.16 -1.8 591,765 + MPMX19_04245 0.16 -1.5 591,765 + MPMX19_04245 0.16 -0.3 591,766 - MPMX19_04245 0.16 -0.1 591,766 - MPMX19_04245 0.16 -1.4 591,766 - MPMX19_04245 0.16 -0.6 591,766 - MPMX19_04245 0.16 -0.3 591,766 - MPMX19_04245 0.16 -0.6 591,766 - MPMX19_04245 0.16 -2.1 591,766 - MPMX19_04245 0.16 -1.4 591,766 - MPMX19_04245 0.16 -0.3 591,766 - MPMX19_04245 0.16 -0.8 591,767 + MPMX19_04245 0.17 -0.1 591,767 + MPMX19_04245 0.17 -1.1 591,767 + MPMX19_04245 0.17 +0.9 591,767 + MPMX19_04245 0.17 -0.6 591,767 + MPMX19_04245 0.17 -0.8 591,767 + MPMX19_04245 0.17 -0.1 591,767 + MPMX19_04245 0.17 -1.5 591,767 + MPMX19_04245 0.17 -0.1 591,768 - MPMX19_04245 0.17 -0.5 591,768 - MPMX19_04245 0.17 -0.5 591,768 - MPMX19_04245 0.17 -1.5 591,804 - MPMX19_04245 0.25 +0.5 591,804 - MPMX19_04245 0.25 +0.2 591,911 + MPMX19_04245 0.49 +0.2 592,159 + -2.1 592,159 + -0.1 592,159 + +0.5 592,159 + +1.1 592,159 + +0.5 592,159 + +1.5 592,159 + -1.6 592,160 - -0.1 592,160 - +1.3 592,160 - +0.3 592,160 - -2.1 592,160 - -1.5 592,160 - -1.5 592,563 + MPMX19_04246 0.54 -0.5 592,563 + MPMX19_04246 0.54 +1.1 592,563 + MPMX19_04246 0.54 -0.8 592,563 + MPMX19_04246 0.54 +0.5 592,563 + MPMX19_04246 0.54 +0.1 592,564 - MPMX19_04246 0.55 +0.1 592,564 - MPMX19_04246 0.55 -0.7 592,564 - MPMX19_04246 0.55 -2.1 592,564 - MPMX19_04246 0.55 -0.5 593,008 + -1.1 593,009 - -1.1 593,048 + +0.9 593,049 - +0.2 593,049 - -0.3 593,049 - -1.3 593,049 - -0.4 593,049 - -0.2 593,096 + +0.5 593,096 + -1.3 593,096 + +0.9 593,096 + -1.3 593,097 - -0.8
Or see this region's nucleotide sequence